data_WIW # _chem_comp.id WIW _chem_comp.name "(5~{S},5~{a}~{R},8~{a}~{R},9~{R})-5-pyrimidin-2-ylsulfanyl-9-(3,4,5-trimethoxyphenyl)-5~{a},6,8~{a},9-tetrahydro-5~{H}-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 N2 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-05 _chem_comp.pdbx_modified_date 2024-10-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 508.543 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WIW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WMO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WIW C4 C1 C 0 1 Y N N N N N 18.024 63.033 43.638 0.790 -2.607 1.287 C4 WIW 1 WIW C5 C2 C 0 1 N N R N N N 19.508 66.354 42.567 -0.456 0.893 1.442 C5 WIW 2 WIW C6 C3 C 0 1 N N N N N N 20.019 67.111 41.370 -0.050 2.321 1.656 C6 WIW 3 WIW C7 C4 C 0 1 N N R N N N 18.689 65.184 42.213 0.645 -0.145 1.486 C7 WIW 4 WIW C8 C5 C 0 1 Y N N N N N 18.535 70.094 47.823 -4.680 1.955 -2.143 C8 WIW 5 WIW C10 C6 C 0 1 N N S N N N 18.675 66.873 44.799 -1.869 -0.280 -0.186 C10 WIW 6 WIW C13 C7 C 0 1 N N N N N N 17.429 61.008 46.705 0.109 -5.882 0.016 C13 WIW 7 WIW C15 C8 C 0 1 Y N N N N N 16.096 65.608 42.207 2.842 1.008 1.169 C15 WIW 8 WIW C17 C9 C 0 1 Y N N N N N 15.009 65.910 40.028 3.908 1.109 -0.983 C17 WIW 9 WIW C20 C10 C 0 1 Y N N N N N 19.955 68.719 46.644 -4.334 0.906 -0.124 C20 WIW 10 WIW C22 C11 C 0 1 Y N N N N N 19.579 70.938 48.078 -5.885 2.450 -1.667 C22 WIW 11 WIW C24 C12 C 0 1 N N N N N N 13.922 66.418 43.544 4.852 2.409 2.314 C24 WIW 12 WIW C26 C13 C 0 1 N N N N N N 17.399 65.655 37.412 1.745 -0.663 -3.355 C26 WIW 13 WIW C1 C14 C 0 1 Y N N N N N 18.024 64.640 46.143 -1.572 -2.735 -0.254 C1 WIW 14 WIW C12 C15 C 0 1 N N N N N N 19.510 68.669 43.321 -1.684 2.282 0.003 C12 WIW 15 WIW C14 C16 C 0 1 Y N N N N N 17.413 65.455 41.458 1.795 0.295 0.617 C14 WIW 16 WIW C16 C17 C 0 1 Y N N N N N 14.983 65.829 41.545 3.900 1.419 0.372 C16 WIW 17 WIW C19 C18 C 0 1 Y N N N N N 17.425 65.511 40.147 1.800 -0.016 -0.730 C19 WIW 18 WIW C2 C19 C 0 1 Y N N N N N 20.812 70.629 47.587 -6.269 2.127 -0.375 C2 WIW 19 WIW "C2'" C20 C 0 1 Y N N N N N 17.696 62.388 45.016 0.301 -3.822 0.837 "C2'" WIW 20 WIW C25 C21 C 0 1 N N N N N N 13.149 64.948 39.049 6.052 0.616 -1.890 C25 WIW 21 WIW "C3'" C22 C 0 1 Y N N N N N 17.695 63.118 46.166 -0.874 -3.886 0.073 "C3'" WIW 22 WIW "C5'" C23 C 0 1 Y N N N N N 16.135 65.763 39.377 2.856 0.387 -1.533 "C5'" WIW 23 WIW C9 C24 C 0 1 N N R N N N 18.753 67.330 43.419 -0.964 0.925 -0.034 C9 WIW 24 WIW CAA C25 C 0 1 Y N N N N N 18.342 65.292 44.846 -1.077 -1.515 0.209 CAA WIW 25 WIW CAB C26 C 0 1 Y N N N N N 18.336 64.485 43.607 0.076 -1.452 0.961 CAB WIW 26 WIW N2 N1 N 0 1 Y N N N N N 20.980 69.534 46.880 -5.480 1.363 0.361 N2 WIW 27 WIW N9 N2 N 0 1 Y N N N N N 18.738 68.999 47.110 -3.940 1.192 -1.357 N9 WIW 28 WIW O1 O1 O 0 1 N N N N N N 20.224 68.603 41.857 -0.800 3.102 0.844 O1 WIW 29 WIW "O2'" O2 O 0 1 N N N N N N 17.373 61.059 45.299 0.779 -5.076 1.007 "O2'" WIW 30 WIW "O3'" O3 O 0 1 N N N N N N 17.374 62.302 47.229 -1.127 -5.179 -0.230 "O3'" WIW 31 WIW "O4'" O4 O 0 1 N N N N N N 13.832 66.132 39.325 4.944 1.511 -1.768 "O4'" WIW 32 WIW "O5'" O5 O 0 1 N N N N N N 16.141 65.844 37.984 2.859 0.082 -2.858 "O5'" WIW 33 WIW O6 O6 O 0 1 N N N N N N 20.235 66.679 40.293 0.801 2.708 2.421 O6 WIW 34 WIW OP3 O7 O 0 1 N N N N N N 13.775 65.984 42.226 4.927 2.126 0.915 OP3 WIW 35 WIW S1 S1 S 0 1 N N N N N N 20.206 67.215 45.667 -3.313 -0.110 0.891 S1 WIW 36 WIW H1 H1 H 0 1 N N N N N N 18.025 62.444 42.733 1.693 -2.555 1.877 H1 WIW 37 WIW H2 H2 H 0 1 N N N N N N 20.378 66.005 43.142 -1.268 0.624 2.119 H2 WIW 38 WIW H3 H3 H 0 1 N N N N N N 19.300 64.478 41.632 0.987 -0.277 2.512 H3 WIW 39 WIW H4 H4 H 0 1 N N N N N N 17.549 70.320 48.202 -4.352 2.188 -3.146 H4 WIW 40 WIW H5 H5 H 0 1 N N N N N N 17.882 67.411 45.339 -2.191 -0.365 -1.224 H5 WIW 41 WIW H6 H6 H 0 1 N N N N N N 16.577 60.424 47.083 0.704 -5.939 -0.896 H6 WIW 42 WIW H7 H7 H 0 1 N N N N N N 18.369 60.528 47.016 -0.090 -6.881 0.404 H7 WIW 43 WIW H8 H8 H 0 1 N N N N N N 16.077 65.535 43.284 2.835 1.249 2.222 H8 WIW 44 WIW H9 H9 H 0 1 N N N N N N 19.429 71.836 48.659 -6.510 3.072 -2.289 H9 WIW 45 WIW H10 H10 H 0 1 N N N N N N 12.931 66.516 44.011 3.955 2.993 2.519 H10 WIW 46 WIW H11 H11 H 0 1 N N N N N N 14.522 65.687 44.106 4.812 1.474 2.872 H11 WIW 47 WIW H12 H12 H 0 1 N N N N N N 14.430 67.394 43.554 5.732 2.976 2.618 H12 WIW 48 WIW H13 H13 H 0 1 N N N N N N 17.320 65.733 36.318 1.873 -0.839 -4.423 H13 WIW 49 WIW H14 H14 H 0 1 N N N N N N 18.091 66.424 37.786 1.685 -1.618 -2.834 H14 WIW 50 WIW H15 H15 H 0 1 N N N N N N 17.778 64.658 37.682 0.828 -0.099 -3.187 H15 WIW 51 WIW H16 H16 H 0 1 N N N N N N 18.021 65.214 47.058 -2.476 -2.781 -0.843 H16 WIW 52 WIW H17 H17 H 0 1 N N N N N N 20.261 68.754 44.120 -1.764 2.704 -0.999 H17 WIW 53 WIW H18 H18 H 0 1 N N N N N N 18.814 69.518 43.380 -2.670 2.183 0.458 H18 WIW 54 WIW H19 H19 H 0 1 N N N N N N 18.353 65.378 39.612 0.979 -0.573 -1.158 H19 WIW 55 WIW H20 H20 H 0 1 N N N N N N 21.650 71.283 47.779 -7.201 2.497 0.026 H20 WIW 56 WIW H21 H21 H 0 1 N N N N N N 12.228 65.177 38.493 6.484 0.436 -0.905 H21 WIW 57 WIW H22 H22 H 0 1 N N N N N N 13.788 64.289 38.444 5.711 -0.328 -2.315 H22 WIW 58 WIW H23 H23 H 0 1 N N N N N N 12.892 64.444 39.993 6.806 1.057 -2.542 H23 WIW 59 WIW H24 H24 H 0 1 N N N N N N 17.741 67.464 43.010 -0.146 0.918 -0.754 H24 WIW 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WIW C26 "O5'" SING N N 1 WIW "O5'" "C5'" SING N N 2 WIW C25 "O4'" SING N N 3 WIW "O4'" C17 SING N N 4 WIW "C5'" C17 DOUB Y N 5 WIW "C5'" C19 SING Y N 6 WIW C17 C16 SING Y N 7 WIW C19 C14 DOUB Y N 8 WIW O6 C6 DOUB N N 9 WIW C6 O1 SING N N 10 WIW C6 C5 SING N N 11 WIW C14 C15 SING Y N 12 WIW C14 C7 SING N N 13 WIW C16 C15 DOUB Y N 14 WIW C16 OP3 SING N N 15 WIW O1 C12 SING N N 16 WIW C7 C5 SING N N 17 WIW C7 CAB SING N N 18 WIW OP3 C24 SING N N 19 WIW C5 C9 SING N N 20 WIW C12 C9 SING N N 21 WIW C9 C10 SING N N 22 WIW CAB C4 DOUB Y N 23 WIW CAB CAA SING Y N 24 WIW C4 "C2'" SING Y N 25 WIW C10 CAA SING N N 26 WIW C10 S1 SING N N 27 WIW CAA C1 DOUB Y N 28 WIW "C2'" "O2'" SING N N 29 WIW "C2'" "C3'" DOUB Y N 30 WIW "O2'" C13 SING N N 31 WIW S1 C20 SING N N 32 WIW C1 "C3'" SING Y N 33 WIW "C3'" "O3'" SING N N 34 WIW C20 N2 DOUB Y N 35 WIW C20 N9 SING Y N 36 WIW C13 "O3'" SING N N 37 WIW N2 C2 SING Y N 38 WIW N9 C8 DOUB Y N 39 WIW C2 C22 DOUB Y N 40 WIW C8 C22 SING Y N 41 WIW C4 H1 SING N N 42 WIW C5 H2 SING N N 43 WIW C7 H3 SING N N 44 WIW C8 H4 SING N N 45 WIW C10 H5 SING N N 46 WIW C13 H6 SING N N 47 WIW C13 H7 SING N N 48 WIW C15 H8 SING N N 49 WIW C22 H9 SING N N 50 WIW C24 H10 SING N N 51 WIW C24 H11 SING N N 52 WIW C24 H12 SING N N 53 WIW C26 H13 SING N N 54 WIW C26 H14 SING N N 55 WIW C26 H15 SING N N 56 WIW C1 H16 SING N N 57 WIW C12 H17 SING N N 58 WIW C12 H18 SING N N 59 WIW C19 H19 SING N N 60 WIW C2 H20 SING N N 61 WIW C25 H21 SING N N 62 WIW C25 H22 SING N N 63 WIW C25 H23 SING N N 64 WIW C9 H24 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WIW InChI InChI 1.06 "InChI=1S/C26H24N2O7S/c1-30-19-7-13(8-20(31-2)23(19)32-3)21-14-9-17-18(35-12-34-17)10-15(14)24(16-11-33-25(29)22(16)21)36-26-27-5-4-6-28-26/h4-10,16,21-22,24H,11-12H2,1-3H3/t16-,21+,22-,24+/m0/s1" WIW InChIKey InChI 1.06 VJWQXPQIWVFAAY-JNTAVDMJSA-N WIW SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1OC)[C@H]2[C@@H]3[C@H](COC3=O)[C@H](Sc4ncccn4)c5cc6OCOc6cc25" WIW SMILES CACTVS 3.385 "COc1cc(cc(OC)c1OC)[CH]2[CH]3[CH](COC3=O)[CH](Sc4ncccn4)c5cc6OCOc6cc25" WIW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)[C@@H]2c3cc4c(cc3[C@H]([C@@H]5[C@@H]2C(=O)OC5)Sc6ncccn6)OCO4" WIW SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1OC)OC)C2c3cc4c(cc3C(C5C2C(=O)OC5)Sc6ncccn6)OCO4" # _pdbx_chem_comp_identifier.comp_id WIW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S},5~{a}~{R},8~{a}~{R},9~{R})-5-pyrimidin-2-ylsulfanyl-9-(3,4,5-trimethoxyphenyl)-5~{a},6,8~{a},9-tetrahydro-5~{H}-[2]benzofuro[5,6-f][1,3]benzodioxol-8-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WIW "Create component" 2023-10-05 PDBC WIW "Initial release" 2024-10-09 RCSB #