data_WJF # _chem_comp.id WJF _chem_comp.name "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(1,2,4-oxadiazol-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 Cl N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-14 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.964 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EGV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WJF N1 N1 N 0 1 N N N -35.447 -30.264 -68.805 6.112 0.022 -0.100 N1 WJF 1 WJF N3 N2 N 0 1 Y N N -47.198 -25.389 -67.464 -9.146 1.794 0.633 N3 WJF 2 WJF C4 C1 C 0 1 N N R -33.020 -30.917 -68.984 8.507 0.497 -0.299 C4 WJF 3 WJF C5 C2 C 0 1 N N R -33.349 -32.322 -69.208 8.816 -0.674 0.639 C5 WJF 4 WJF C6 C3 C 0 1 N N N -33.640 -28.691 -68.054 6.808 2.227 -0.903 C6 WJF 5 WJF C7 C4 C 0 1 N N N -36.419 -29.623 -68.301 4.762 0.570 0.087 C7 WJF 6 WJF C8 C5 C 0 1 N N N -36.653 -30.120 -66.822 3.725 -0.506 -0.243 C8 WJF 7 WJF C10 C6 C 0 1 Y N N -39.164 -29.913 -66.801 1.693 0.676 -1.104 C10 WJF 8 WJF C13 C7 C 0 1 Y N N -39.113 -28.147 -64.622 0.445 0.468 1.355 C13 WJF 9 WJF C15 C8 C 0 1 N N N -41.676 -27.980 -64.681 -1.586 1.650 0.494 C15 WJF 10 WJF C17 C9 C 0 1 Y N N -44.207 -27.355 -64.185 -5.089 0.322 0.108 C17 WJF 11 WJF C20 C10 C 0 1 Y N N -44.792 -24.851 -65.219 -7.304 -1.278 -0.378 C20 WJF 12 WJF C21 C11 C 0 1 Y N N -44.040 -24.946 -64.037 -6.031 -1.787 -0.553 C21 WJF 13 WJF C22 C12 C 0 1 Y N N -43.764 -26.207 -63.535 -4.925 -0.992 -0.312 C22 WJF 14 WJF C24 C13 C 0 1 Y N N -46.529 -26.350 -69.314 -10.951 0.784 0.333 C24 WJF 15 WJF C1 C14 C 0 1 N N S -34.679 -32.330 -69.860 7.715 -1.729 0.504 C1 WJF 16 WJF C11 C15 C 0 1 Y N N -40.330 -29.390 -66.283 0.423 1.192 -0.927 C11 WJF 17 WJF C12 C16 C 0 1 Y N N -40.331 -28.502 -65.206 -0.201 1.088 0.302 C12 WJF 18 WJF C14 C17 C 0 1 Y N N -37.913 -28.683 -65.108 1.716 -0.048 1.178 C14 WJF 19 WJF C16 C18 C 0 1 N N N -42.449 -29.034 -63.854 -2.624 0.576 0.163 C16 WJF 20 WJF C18 C19 C 0 1 Y N N -44.927 -27.267 -65.366 -6.364 0.838 0.290 C18 WJF 21 WJF C19 C20 C 0 1 Y N N -45.234 -26.013 -65.882 -7.476 0.038 0.047 C19 WJF 22 WJF C2 C21 C 0 1 N N N -35.710 -31.709 -68.857 6.361 -1.092 0.825 C2 WJF 23 WJF C23 C22 C 0 1 Y N N -46.027 -25.981 -67.201 -8.842 0.584 0.241 C23 WJF 24 WJF C3 C23 C 0 1 N N R -34.105 -30.153 -68.157 7.130 1.070 0.045 C3 WJF 25 WJF C9 C24 C 0 1 Y N N -37.940 -29.559 -66.212 2.340 0.057 -0.051 C9 WJF 26 WJF N2 N3 N 0 1 N N N -43.848 -28.647 -63.627 -3.970 1.123 0.350 N2 WJF 27 WJF N4 N4 N 0 1 Y N N -45.607 -26.597 -68.373 -10.006 -0.076 0.044 N4 WJF 28 WJF O1 O1 O 0 1 N N N -35.068 -33.639 -70.197 7.966 -2.800 1.417 O1 WJF 29 WJF O2 O2 O 0 1 N N N -32.412 -32.897 -70.209 10.076 -1.248 0.287 O2 WJF 30 WJF O3 O3 O 0 1 N N N -31.694 -30.751 -68.425 9.500 1.512 -0.139 O3 WJF 31 WJF O4 O4 O 0 1 N N N -33.923 -28.052 -69.303 6.881 1.770 -2.255 O4 WJF 32 WJF O5 O5 O 0 1 Y N N -47.471 -25.628 -68.747 -10.351 1.923 0.691 O5 WJF 33 WJF CL1 CL1 CL 0 0 N N N -43.403 -23.546 -63.100 -5.819 -3.429 -1.077 CL1 WJF 34 WJF H2 H2 H 0 1 N N N -33.010 -30.435 -69.973 8.508 0.147 -1.331 H2 WJF 35 WJF H3 H3 H 0 1 N N N -33.350 -32.901 -68.273 8.853 -0.316 1.668 H3 WJF 36 WJF H4 H4 H 0 1 N N N -32.559 -28.656 -67.852 5.804 2.596 -0.698 H4 WJF 37 WJF H5 H5 H 0 1 N N N -34.181 -28.183 -67.243 7.529 3.031 -0.753 H5 WJF 38 WJF H6 H6 H 0 1 N N N -36.188 -28.548 -68.296 4.639 0.887 1.123 H6 WJF 39 WJF H7 H7 H 0 1 N N N -37.326 -29.801 -68.897 4.622 1.425 -0.573 H7 WJF 40 WJF H8 H8 H 0 1 N N N -36.713 -31.218 -66.824 3.848 -0.823 -1.279 H8 WJF 41 WJF H9 H9 H 0 1 N N N -35.801 -29.801 -66.204 3.865 -1.361 0.418 H9 WJF 42 WJF H10 H10 H 0 1 N N N -39.192 -30.584 -67.647 2.178 0.754 -2.065 H10 WJF 43 WJF H11 H11 H 0 1 N N N -39.096 -27.456 -63.792 -0.042 0.387 2.315 H11 WJF 44 WJF H12 H12 H 0 1 N N N -41.488 -27.103 -64.044 -1.709 1.967 1.530 H12 WJF 45 WJF H13 H13 H 0 1 N N N -42.297 -27.683 -65.539 -1.726 2.506 -0.166 H13 WJF 46 WJF H14 H14 H 0 1 N N N -45.034 -23.879 -65.623 -8.165 -1.902 -0.567 H14 WJF 47 WJF H15 H15 H 0 1 N N N -43.194 -26.301 -62.622 -3.932 -1.394 -0.449 H15 WJF 48 WJF H16 H16 H 0 1 N N N -46.503 -26.681 -70.342 -12.015 0.605 0.289 H16 WJF 49 WJF H17 H17 H 0 1 N N N -34.648 -31.696 -70.758 7.703 -2.115 -0.515 H17 WJF 50 WJF H18 H18 H 0 1 N N N -41.273 -29.677 -66.725 -0.083 1.677 -1.750 H18 WJF 51 WJF H19 H19 H 0 1 N N N -36.974 -28.427 -64.640 2.221 -0.532 2.001 H19 WJF 52 WJF H20 H20 H 0 1 N N N -42.430 -29.992 -64.395 -2.501 0.259 -0.872 H20 WJF 53 WJF H21 H21 H 0 1 N N N -41.952 -29.153 -62.880 -2.484 -0.280 0.824 H21 WJF 54 WJF H22 H22 H 0 1 N N N -45.246 -28.162 -65.879 -6.492 1.859 0.620 H22 WJF 55 WJF H23 H23 H 0 1 N N N -36.736 -31.893 -69.208 6.369 -0.719 1.849 H23 WJF 56 WJF H24 H24 H 0 1 N N N -35.579 -32.152 -67.859 5.573 -1.837 0.716 H24 WJF 57 WJF H25 H25 H 0 1 N N N -34.147 -30.587 -67.147 7.134 1.433 1.072 H25 WJF 58 WJF H26 H26 H 0 1 N N N -44.009 -28.618 -62.640 -4.084 2.040 0.643 H26 WJF 59 WJF H27 H27 H 0 1 N N N -35.922 -33.619 -70.613 7.306 -3.506 1.386 H27 WJF 60 WJF H28 H28 H 0 1 N N N -31.534 -32.919 -69.846 10.335 -1.997 0.841 H28 WJF 61 WJF H29 H29 H 0 1 N N N -31.518 -29.827 -68.294 10.399 1.218 -0.340 H29 WJF 62 WJF H30 H30 H 0 1 N N N -33.644 -27.145 -69.265 6.688 2.452 -2.912 H30 WJF 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WJF O2 C5 SING N N 1 WJF O1 C1 SING N N 2 WJF C1 C5 SING N N 3 WJF C1 C2 SING N N 4 WJF C24 O5 SING Y N 5 WJF C24 N4 DOUB Y N 6 WJF O4 C6 SING N N 7 WJF C5 C4 SING N N 8 WJF C4 O3 SING N N 9 WJF C4 C3 SING N N 10 WJF C2 N1 SING N N 11 WJF N1 C7 SING N N 12 WJF N1 C3 SING N N 13 WJF O5 N3 SING Y N 14 WJF N4 C23 SING Y N 15 WJF C7 C8 SING N N 16 WJF C3 C6 SING N N 17 WJF N3 C23 DOUB Y N 18 WJF C23 C19 SING N N 19 WJF C8 C9 SING N N 20 WJF C10 C11 DOUB Y N 21 WJF C10 C9 SING Y N 22 WJF C11 C12 SING Y N 23 WJF C9 C14 DOUB Y N 24 WJF C19 C18 DOUB Y N 25 WJF C19 C20 SING Y N 26 WJF C18 C17 SING Y N 27 WJF C20 C21 DOUB Y N 28 WJF C12 C15 SING N N 29 WJF C12 C13 DOUB Y N 30 WJF C14 C13 SING Y N 31 WJF C15 C16 SING N N 32 WJF C17 N2 SING N N 33 WJF C17 C22 DOUB Y N 34 WJF C21 C22 SING Y N 35 WJF C21 CL1 SING N N 36 WJF C16 N2 SING N N 37 WJF C4 H2 SING N N 38 WJF C5 H3 SING N N 39 WJF C6 H4 SING N N 40 WJF C6 H5 SING N N 41 WJF C7 H6 SING N N 42 WJF C7 H7 SING N N 43 WJF C8 H8 SING N N 44 WJF C8 H9 SING N N 45 WJF C10 H10 SING N N 46 WJF C13 H11 SING N N 47 WJF C15 H12 SING N N 48 WJF C15 H13 SING N N 49 WJF C20 H14 SING N N 50 WJF C22 H15 SING N N 51 WJF C24 H16 SING N N 52 WJF C1 H17 SING N N 53 WJF C11 H18 SING N N 54 WJF C14 H19 SING N N 55 WJF C16 H20 SING N N 56 WJF C16 H21 SING N N 57 WJF C18 H22 SING N N 58 WJF C2 H23 SING N N 59 WJF C2 H24 SING N N 60 WJF C3 H25 SING N N 61 WJF N2 H26 SING N N 62 WJF O1 H27 SING N N 63 WJF O2 H28 SING N N 64 WJF O3 H29 SING N N 65 WJF O4 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WJF SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1CCc1ccc(cc1)CCNc1cc(Cl)cc(c1)c1ncon1" WJF InChI InChI 1.06 "InChI=1S/C24H29ClN4O5/c25-18-9-17(24-27-14-34-28-24)10-19(11-18)26-7-5-15-1-3-16(4-2-15)6-8-29-12-21(31)23(33)22(32)20(29)13-30/h1-4,9-11,14,20-23,26,30-33H,5-8,12-13H2/t20-,21+,22-,23-/m1/s1" WJF InChIKey InChI 1.06 IECIOXOWPHIYDY-KAOXLYBCSA-N WJF SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4nocn4)cc2" WJF SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4nocn4)cc2" WJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCNc2cc(cc(c2)Cl)c3ncon3)CCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O" WJF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCNc2cc(cc(c2)Cl)c3ncon3)CCN4CC(C(C(C4CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WJF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(1,2,4-oxadiazol-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" WJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[2-[4-[2-[[3-chloranyl-5-(1,2,4-oxadiazol-3-yl)phenyl]amino]ethyl]phenyl]ethyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WJF "Create component" 2022-09-14 RCSB WJF "Initial release" 2023-02-22 RCSB #