data_WJP # _chem_comp.id WJP _chem_comp.name "methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H48 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms dolichol-pp _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-30 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 534.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WJP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6WLW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WJP C01 C1 C 0 1 N N N 238.457 264.989 251.641 -0.723 1.298 -0.197 C01 WJP 1 WJP C02 C2 C 0 1 N N R 237.083 265.611 251.956 -1.692 2.471 -0.358 C02 WJP 2 WJP C03 C3 C 0 1 N N N 235.965 264.826 251.190 -1.156 3.684 0.405 C03 WJP 3 WJP C04 C4 C 0 1 N N N 236.330 263.476 250.544 0.154 4.150 -0.233 C04 WJP 4 WJP C05 C5 C 0 1 N N N 236.498 263.386 249.056 0.681 5.345 0.520 C05 WJP 5 WJP C06 C6 C 0 1 N N N 237.248 262.344 248.596 1.850 5.284 1.108 C06 WJP 6 WJP C07 C7 C 0 1 N N N 237.600 261.988 247.196 2.434 6.515 1.751 C07 WJP 7 WJP C08 C8 C 0 1 N N N 237.842 261.409 249.648 2.610 3.983 1.142 C08 WJP 8 WJP C09 C9 C 0 1 N N N 237.201 259.993 249.829 3.560 3.916 -0.056 C09 WJP 9 WJP C10 C10 C 0 1 N N N 237.653 258.971 248.865 4.320 2.615 -0.022 C10 WJP 10 WJP C11 C11 C 0 1 N N N 238.301 257.775 249.189 5.629 2.620 -0.062 C11 WJP 11 WJP C12 C12 C 0 1 N N N 238.569 257.496 250.590 6.371 3.911 -0.296 C12 WJP 12 WJP C13 C13 C 0 1 N N N 238.681 256.869 248.057 6.394 1.335 0.124 C13 WJP 13 WJP C14 C14 C 0 1 N N N 239.781 257.444 247.095 6.718 0.731 -1.243 C14 WJP 14 WJP C15 C15 C 0 1 N N N 241.223 257.418 247.519 7.483 -0.554 -1.056 C15 WJP 15 WJP C16 C16 C 0 1 N N N 242.066 258.530 247.635 6.969 -1.687 -1.466 C16 WJP 16 WJP C17 C17 C 0 1 N N N 241.483 259.841 247.320 5.600 -1.710 -2.095 C17 WJP 17 WJP C18 C18 C 0 1 N N N 243.507 258.369 248.074 7.748 -2.968 -1.308 C18 WJP 18 WJP C19 C19 C 0 1 N N N 244.030 256.939 248.383 7.326 -3.665 -0.013 C19 WJP 19 WJP C20 C20 C 0 1 N N N 245.522 256.710 248.277 8.104 -4.945 0.145 C20 WJP 20 WJP C21 C21 C 0 1 N N N 246.126 255.853 247.408 8.920 -5.095 1.158 C21 WJP 21 WJP C22 C22 C 0 1 N N N 247.619 255.675 247.352 9.118 -3.968 2.139 C22 WJP 22 WJP C23 C23 C 0 1 N N N 245.295 255.056 246.470 9.662 -6.394 1.343 C23 WJP 23 WJP C24 C24 C 0 1 N N N 237.073 267.129 251.638 -3.062 2.081 0.200 C24 WJP 24 WJP C25 C25 C 0 1 N N N 237.849 268.074 252.627 -3.653 0.949 -0.643 C25 WJP 25 WJP O26 O1 O 0 1 N N N 237.568 269.407 252.375 -4.933 0.585 -0.121 O26 WJP 26 WJP O28 O2 O 0 1 N N N 240.013 269.903 252.085 -5.065 -1.833 -0.833 O28 WJP 27 WJP O29 O3 O 0 1 N N N 238.681 270.990 254.012 -6.297 -0.144 -2.247 O29 WJP 28 WJP O30 O4 O 0 1 N N N 238.561 271.926 251.641 -7.149 -0.803 0.151 O30 WJP 29 WJP O32 O5 O 0 1 N N N 236.046 272.157 251.577 -9.054 -1.795 1.667 O32 WJP 30 WJP O33 O6 O 0 1 N N N 237.397 272.475 249.397 -7.469 -3.295 0.397 O33 WJP 31 WJP O34 O7 O 0 1 N N N 237.252 274.313 251.131 -9.195 -2.036 -0.947 O34 WJP 32 WJP P27 P1 P 0 1 N N N 238.779 270.656 252.552 -5.844 -0.576 -0.764 P27 WJP 33 WJP P31 P2 P 0 1 N N N 237.331 272.592 250.893 -8.201 -2.010 0.319 P31 WJP 34 WJP H1 H1 H 0 1 N N N 239.242 265.541 252.179 -0.627 1.048 0.860 H1 WJP 35 WJP H2 H2 H 0 1 N N N 238.465 263.936 251.960 -1.105 0.434 -0.741 H2 WJP 36 WJP H3 H3 H 0 1 N N N 238.646 265.046 250.559 0.253 1.576 -0.595 H3 WJP 37 WJP H4 H4 H 0 1 N N N 236.896 265.491 253.033 -1.788 2.720 -1.415 H4 WJP 38 WJP H5 H5 H 0 1 N N N 235.599 265.482 250.387 -1.888 4.491 0.365 H5 WJP 39 WJP H6 H6 H 0 1 N N N 235.153 264.635 251.907 -0.977 3.408 1.445 H6 WJP 40 WJP H7 H7 H 0 1 N N N 235.536 262.766 250.819 0.885 3.343 -0.192 H7 WJP 41 WJP H8 H8 H 0 1 N N N 237.282 263.155 250.993 -0.026 4.426 -1.272 H8 WJP 42 WJP H9 H9 H 0 1 N N N 236.050 264.106 248.387 0.096 6.251 0.573 H9 WJP 43 WJP H10 H10 H 0 1 N N N 238.222 261.081 247.193 2.116 6.567 2.793 H10 WJP 44 WJP H11 H11 H 0 1 N N N 236.680 261.803 246.622 3.523 6.467 1.706 H11 WJP 45 WJP H12 H12 H 0 1 N N N 238.158 262.817 246.736 2.087 7.402 1.221 H12 WJP 46 WJP H13 H13 H 0 1 N N N 238.900 261.257 249.388 3.186 3.923 2.066 H13 WJP 47 WJP H14 H14 H 0 1 N N N 237.773 261.924 250.618 1.908 3.151 1.096 H14 WJP 48 WJP H15 H15 H 0 1 N N N 236.111 260.098 249.728 2.984 3.977 -0.980 H15 WJP 49 WJP H16 H16 H 0 1 N N N 237.443 259.637 250.841 4.262 4.748 -0.010 H16 WJP 50 WJP H17 H17 H 0 1 N N N 237.467 259.164 247.819 3.785 1.679 0.035 H17 WJP 51 WJP H18 H18 H 0 1 N N N 238.187 258.322 251.208 6.491 4.438 0.651 H18 WJP 52 WJP H19 H19 H 0 1 N N N 238.069 256.560 250.879 7.352 3.696 -0.718 H19 WJP 53 WJP H20 H20 H 0 1 N N N 239.654 257.395 250.743 5.806 4.535 -0.989 H20 WJP 54 WJP H21 H21 H 0 1 N N N 237.778 256.667 247.462 7.321 1.539 0.661 H21 WJP 55 WJP H22 H22 H 0 1 N N N 239.057 255.928 248.484 5.789 0.633 0.698 H22 WJP 56 WJP H23 H23 H 0 1 N N N 239.522 258.496 246.906 5.791 0.528 -1.780 H23 WJP 57 WJP H24 H24 H 0 1 N N N 239.714 256.875 246.156 7.323 1.434 -1.816 H24 WJP 58 WJP H25 H25 H 0 1 N N N 241.648 256.454 247.756 8.455 -0.540 -0.585 H25 WJP 59 WJP H26 H26 H 0 1 N N N 242.246 260.623 247.450 5.683 -1.472 -3.155 H26 WJP 60 WJP H27 H27 H 0 1 N N N 241.129 259.844 246.279 5.163 -2.702 -1.979 H27 WJP 61 WJP H28 H28 H 0 1 N N N 240.637 260.038 247.995 4.963 -0.973 -1.605 H28 WJP 62 WJP H29 H29 H 0 1 N N N 244.139 258.780 247.273 7.545 -3.623 -2.156 H29 WJP 63 WJP H30 H30 H 0 1 N N N 243.637 258.967 248.988 8.813 -2.743 -1.269 H30 WJP 64 WJP H31 H31 H 0 1 N N N 243.730 256.692 249.412 7.528 -3.010 0.835 H31 WJP 65 WJP H32 H32 H 0 1 N N N 243.539 256.248 247.682 6.260 -3.890 -0.052 H32 WJP 66 WJP H33 H33 H 0 1 N N N 246.159 257.271 248.944 7.988 -5.740 -0.577 H33 WJP 67 WJP H34 H34 H 0 1 N N N 248.095 256.326 248.100 8.453 -4.107 2.991 H34 WJP 68 WJP H35 H35 H 0 1 N N N 247.871 254.626 247.566 10.153 -3.963 2.483 H35 WJP 69 WJP H36 H36 H 0 1 N N N 247.983 255.942 246.349 8.892 -3.019 1.653 H36 WJP 70 WJP H37 H37 H 0 1 N N N 244.233 255.293 246.629 10.616 -6.346 0.817 H37 WJP 71 WJP H38 H38 H 0 1 N N N 245.574 255.301 245.435 9.842 -6.562 2.405 H38 WJP 72 WJP H39 H39 H 0 1 N N N 245.463 253.984 246.652 9.066 -7.213 0.941 H39 WJP 73 WJP H40 H40 H 0 1 N N N 237.514 267.261 250.639 -2.953 1.747 1.232 H40 WJP 74 WJP H41 H41 H 0 1 N N N 236.023 267.457 251.622 -3.727 2.944 0.167 H41 WJP 75 WJP H42 H42 H 0 1 N N N 237.552 267.834 253.659 -3.763 1.284 -1.674 H42 WJP 76 WJP H43 H43 H 0 1 N N N 238.930 267.907 252.508 -2.988 0.086 -0.609 H43 WJP 77 WJP H44 H44 H 0 1 N N N 239.450 270.664 254.464 -6.813 0.674 -2.279 H44 WJP 78 WJP H46 H46 H 0 1 N N N 237.269 274.751 250.288 -9.708 -1.224 -1.061 H46 WJP 79 WJP C26 C26 C 0 1 N N N ? ? ? -9.999 -2.752 2.151 C26 WJP 80 WJP H45 H45 H 0 1 N N N ? ? ? -10.778 -2.903 1.404 H45 WJP 81 WJP H47 H47 H 0 1 N N N ? ? ? -9.492 -3.697 2.344 H47 WJP 82 WJP H48 H48 H 0 1 N N N ? ? ? -10.447 -2.384 3.074 H48 WJP 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WJP C23 C21 SING N N 1 WJP C14 C15 SING N N 2 WJP C14 C13 SING N N 3 WJP C07 C06 SING N N 4 WJP C17 C16 SING N N 5 WJP C22 C21 SING N N 6 WJP C21 C20 DOUB N N 7 WJP C15 C16 DOUB N E 8 WJP C16 C18 SING N N 9 WJP C13 C11 SING N N 10 WJP C18 C19 SING N N 11 WJP C20 C19 SING N N 12 WJP C06 C05 DOUB N Z 13 WJP C06 C08 SING N N 14 WJP C10 C11 DOUB N E 15 WJP C10 C09 SING N N 16 WJP C05 C04 SING N N 17 WJP C11 C12 SING N N 18 WJP O33 P31 DOUB N N 19 WJP C08 C09 SING N N 20 WJP C04 C03 SING N N 21 WJP P31 O34 SING N N 22 WJP P31 O32 SING N N 23 WJP P31 O30 SING N N 24 WJP C03 C02 SING N N 25 WJP C24 C02 SING N N 26 WJP C24 C25 SING N N 27 WJP O30 P27 SING N N 28 WJP C01 C02 SING N N 29 WJP O28 P27 DOUB N N 30 WJP O26 P27 SING N N 31 WJP O26 C25 SING N N 32 WJP P27 O29 SING N N 33 WJP C01 H1 SING N N 34 WJP C01 H2 SING N N 35 WJP C01 H3 SING N N 36 WJP C02 H4 SING N N 37 WJP C03 H5 SING N N 38 WJP C03 H6 SING N N 39 WJP C04 H7 SING N N 40 WJP C04 H8 SING N N 41 WJP C05 H9 SING N N 42 WJP C07 H10 SING N N 43 WJP C07 H11 SING N N 44 WJP C07 H12 SING N N 45 WJP C08 H13 SING N N 46 WJP C08 H14 SING N N 47 WJP C09 H15 SING N N 48 WJP C09 H16 SING N N 49 WJP C10 H17 SING N N 50 WJP C12 H18 SING N N 51 WJP C12 H19 SING N N 52 WJP C12 H20 SING N N 53 WJP C13 H21 SING N N 54 WJP C13 H22 SING N N 55 WJP C14 H23 SING N N 56 WJP C14 H24 SING N N 57 WJP C15 H25 SING N N 58 WJP C17 H26 SING N N 59 WJP C17 H27 SING N N 60 WJP C17 H28 SING N N 61 WJP C18 H29 SING N N 62 WJP C18 H30 SING N N 63 WJP C19 H31 SING N N 64 WJP C19 H32 SING N N 65 WJP C20 H33 SING N N 66 WJP C22 H34 SING N N 67 WJP C22 H35 SING N N 68 WJP C22 H36 SING N N 69 WJP C23 H37 SING N N 70 WJP C23 H38 SING N N 71 WJP C23 H39 SING N N 72 WJP C24 H40 SING N N 73 WJP C24 H41 SING N N 74 WJP C25 H42 SING N N 75 WJP C25 H43 SING N N 76 WJP O29 H44 SING N N 77 WJP O34 H46 SING N N 78 WJP O32 C26 SING N N 79 WJP C26 H45 SING N N 80 WJP C26 H47 SING N N 81 WJP C26 H48 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WJP SMILES ACDLabs 12.01 "CC(CC[C@H]=C(CC\C=C(/C)CC\C=C(\CC[C@H]=C(C)C)C)C)CCOP(=O)(O)OP(OC)(=O)O" WJP InChI InChI 1.03 "InChI=1S/C26H48O7P2/c1-22(2)12-8-13-23(3)14-9-15-24(4)16-10-17-25(5)18-11-19-26(6)20-21-32-35(29,30)33-34(27,28)31-7/h12,14,16,18,26H,8-11,13,15,17,19-21H2,1-7H3,(H,27,28)(H,29,30)/b23-14+,24-16+,25-18-/t26-/m1/s1" WJP InChIKey InChI 1.03 GDOCHZBDTMOKKR-FEJNUDJDSA-N WJP SMILES_CANONICAL CACTVS 3.385 "CO[P](O)(=O)O[P](O)(=O)OCC[C@H](C)CC/C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C" WJP SMILES CACTVS 3.385 "CO[P](O)(=O)O[P](O)(=O)OCC[CH](C)CCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C" WJP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CC/C=C(/C)\CC/C=C(\C)/CC/C=C(\C)/CCC=C(C)C)CCOP(=O)(O)OP(=O)(O)OC" WJP SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C)CCOP(=O)(O)OP(=O)(O)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WJP "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate" WJP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[methoxy(oxidanyl)phosphoryl] [(3~{R},6~{Z},10~{E},14~{E})-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraenyl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WJP "Create component" 2020-10-30 RCSB WJP "Initial release" 2020-11-11 RCSB WJP "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WJP _pdbx_chem_comp_synonyms.name dolichol-pp _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##