data_WK6 # _chem_comp.id WK6 _chem_comp.name "L-gamma-glutamyl-S-(benzylcarbamothioyl)-L-cysteinylglycine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-05 _chem_comp.pdbx_modified_date 2025-03-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 456.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WK6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UDH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WK6 S1 S1 S 0 1 N N N N N N -33.070 -5.770 -24.878 -1.294 -0.162 -0.351 S1 WK6 1 WK6 C1 C1 C 0 1 Y N N N N N -34.014 -9.642 -31.438 -7.996 -3.386 -0.546 C1 WK6 2 WK6 C2 C2 C 0 1 Y N N N N N -34.858 -10.400 -30.664 -7.334 -3.404 0.668 C2 WK6 3 WK6 C3 C3 C 0 1 Y N N N N N -35.109 -10.076 -29.319 -6.457 -2.385 0.992 C3 WK6 4 WK6 C4 C4 C 0 1 Y N N N N N -34.525 -9.025 -28.669 -6.241 -1.349 0.102 C4 WK6 5 WK6 C5 C5 C 0 1 Y N N N N N -33.651 -8.281 -29.447 -6.903 -1.332 -1.111 C5 WK6 6 WK6 C6 C6 C 0 1 Y N N N N N -33.386 -8.594 -30.795 -7.780 -2.350 -1.435 C6 WK6 7 WK6 C7 C7 C 0 1 N N N N N N -34.857 -8.764 -27.212 -5.285 -0.240 0.455 C7 WK6 8 WK6 N1 N1 N 0 1 N N N N N N -34.079 -7.687 -26.558 -3.939 -0.590 -0.005 N1 WK6 9 WK6 C8 C8 C 0 1 N N N N N N -34.249 -6.958 -25.385 -2.913 0.259 0.203 C8 WK6 10 WK6 S2 S2 S 0 1 N N N N N N -35.574 -7.231 -24.528 -3.184 1.747 1.005 S2 WK6 11 WK6 C9 C9 C 0 1 N N N N N N -30.957 -0.435 -25.722 4.490 -2.375 -0.226 C9 WK6 12 WK6 C10 C10 C 0 1 N N N N N N -31.044 -1.496 -24.635 3.293 -1.870 0.583 C10 WK6 13 WK6 C11 C11 C 0 1 N N N N N N -32.450 -2.066 -24.523 2.717 -0.647 -0.083 C11 WK6 14 WK6 O1 O1 O 0 1 N N N N N N -33.371 -1.770 -25.299 3.214 -0.222 -1.105 O1 WK6 15 WK6 N2 N2 N 0 1 N N N N N N -32.545 -2.950 -23.516 1.649 -0.026 0.456 N2 WK6 16 WK6 C12 C12 C 0 1 N N S N N N -33.745 -3.694 -23.122 1.089 1.163 -0.192 C12 WK6 17 WK6 C13 C13 C 0 1 N N N N N N -33.377 -5.190 -23.239 -0.385 1.306 0.191 C13 WK6 18 WK6 C14 C14 C 0 1 N N N N N N -34.048 -3.435 -21.667 1.847 2.385 0.259 C14 WK6 19 WK6 O2 O2 O 0 1 N N N N N N -34.765 -4.184 -21.062 2.764 2.274 1.045 O2 WK6 20 WK6 N3 N3 N 0 1 N N N N N N -33.498 -2.413 -21.020 1.504 3.601 -0.210 N3 WK6 21 WK6 C15 C15 C 0 1 N N N N N N -33.687 -2.152 -19.598 2.241 4.790 0.229 C15 WK6 22 WK6 C16 C16 C 0 1 N N N N N N -34.339 -0.835 -19.282 1.664 6.012 -0.438 C16 WK6 23 WK6 O3 O3 O 0 1 N N N N N N -34.906 -0.196 -20.197 0.734 5.902 -1.201 O3 WK6 24 WK6 O4 O4 O 0 1 N N N N N N -34.220 -0.485 -18.087 2.184 7.223 -0.184 O4 WK6 25 WK6 C17 C17 C 0 1 N N S N N N -29.599 0.296 -25.812 5.075 -3.617 0.451 C17 WK6 26 WK6 C18 C18 C 0 1 N N N N N N -28.619 -0.740 -26.353 6.173 -4.187 -0.408 C18 WK6 27 WK6 O5 O5 O 0 1 N N N N N N -28.162 -1.635 -25.592 7.329 -3.956 -0.143 O5 WK6 28 WK6 O6 O6 O 0 1 N N N N N N -28.372 -0.683 -27.577 5.868 -4.950 -1.469 O6 WK6 29 WK6 N4 N4 N 0 1 N N N N N N -29.748 1.492 -26.705 5.621 -3.247 1.764 N4 WK6 30 WK6 H1 H1 H 0 1 N N N N N N -33.852 -9.853 -32.485 -8.677 -4.184 -0.801 H1 WK6 31 WK6 H2 H2 H 0 1 N N N N N N -35.339 -11.264 -31.098 -7.502 -4.213 1.363 H2 WK6 32 WK6 H3 H3 H 0 1 N N N N N N -35.803 -10.693 -28.768 -5.941 -2.399 1.941 H3 WK6 33 WK6 H4 H4 H 0 1 N N N N N N -33.155 -7.430 -29.003 -6.735 -0.522 -1.806 H4 WK6 34 WK6 H5 H5 H 0 1 N N N N N N -32.671 -7.997 -31.341 -8.297 -2.336 -2.383 H5 WK6 35 WK6 H6 H6 H 0 1 N N N N N N -35.922 -8.496 -27.151 -5.605 0.683 -0.028 H6 WK6 36 WK6 H7 H7 H 0 1 N N N N N N -34.681 -9.695 -26.653 -5.274 -0.099 1.536 H7 WK6 37 WK6 H8 H8 H 0 1 N N N N N N -33.258 -7.429 -27.067 -3.786 -1.433 -0.460 H8 WK6 38 WK6 H9 H9 H 0 1 N N N N N N -31.148 -0.921 -26.690 4.164 -2.631 -1.234 H9 WK6 39 WK6 H10 H10 H 0 1 N N N N N N -31.737 0.316 -25.529 5.250 -1.596 -0.275 H10 WK6 40 WK6 H11 H11 H 0 1 N N N N N N -30.346 -2.311 -24.875 2.533 -2.649 0.633 H11 WK6 41 WK6 H12 H12 H 0 1 N N N N N N -30.764 -1.045 -23.672 3.619 -1.614 1.592 H12 WK6 42 WK6 H13 H13 H 0 1 N N N N N N -31.716 -3.117 -22.983 1.252 -0.365 1.273 H13 WK6 43 WK6 H14 H14 H 0 1 N N N N N N -34.608 -3.452 -23.760 1.175 1.061 -1.274 H14 WK6 44 WK6 H15 H15 H 0 1 N N N N N N -34.208 -5.777 -22.822 -0.802 2.190 -0.291 H15 WK6 45 WK6 H16 H16 H 0 1 N N N N N N -32.469 -5.364 -22.642 -0.471 1.407 1.273 H16 WK6 46 WK6 H17 H17 H 0 1 N N N N N N -32.919 -1.785 -21.540 0.771 3.690 -0.838 H17 WK6 47 WK6 H18 H18 H 0 1 N N N N N N -34.316 -2.954 -19.183 2.155 4.891 1.311 H18 WK6 48 WK6 H19 H19 H 0 1 N N N N N N -32.700 -2.171 -19.112 3.291 4.688 -0.045 H19 WK6 49 WK6 H24 H20 H 0 1 N N N N N N -34.633 0.362 -17.962 1.781 7.977 -0.635 H24 WK6 50 WK6 H20 H21 H 0 1 N N N N N N -29.286 0.613 -24.806 4.291 -4.363 0.581 H20 WK6 51 WK6 H25 H22 H 0 1 N N N N N N -27.803 -1.404 -27.820 6.607 -5.293 -1.991 H25 WK6 52 WK6 H23 H23 H 0 1 N N N N N N -28.873 1.972 -26.769 6.350 -2.556 1.670 H23 WK6 53 WK6 H21 H24 H 0 1 N N N N N N -30.032 1.194 -27.616 4.892 -2.922 2.381 H21 WK6 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WK6 S1 C8 SING N N 1 WK6 S1 C13 SING N N 2 WK6 C1 C2 DOUB Y N 3 WK6 C1 C6 SING Y N 4 WK6 C2 C3 SING Y N 5 WK6 C3 C4 DOUB Y N 6 WK6 C4 C5 SING Y N 7 WK6 C4 C7 SING N N 8 WK6 C5 C6 DOUB Y N 9 WK6 C7 N1 SING N N 10 WK6 N1 C8 SING N N 11 WK6 C8 S2 DOUB N N 12 WK6 C9 C10 SING N N 13 WK6 C9 C17 SING N N 14 WK6 C10 C11 SING N N 15 WK6 C11 O1 DOUB N N 16 WK6 C11 N2 SING N N 17 WK6 N2 C12 SING N N 18 WK6 C12 C13 SING N N 19 WK6 C12 C14 SING N N 20 WK6 C14 O2 DOUB N N 21 WK6 C14 N3 SING N N 22 WK6 N3 C15 SING N N 23 WK6 C15 C16 SING N N 24 WK6 C16 O3 DOUB N N 25 WK6 C16 O4 SING N N 26 WK6 C17 C18 SING N N 27 WK6 C17 N4 SING N N 28 WK6 C18 O5 DOUB N N 29 WK6 C18 O6 SING N N 30 WK6 C1 H1 SING N N 31 WK6 C2 H2 SING N N 32 WK6 C3 H3 SING N N 33 WK6 C5 H4 SING N N 34 WK6 C6 H5 SING N N 35 WK6 C7 H6 SING N N 36 WK6 C7 H7 SING N N 37 WK6 N1 H8 SING N N 38 WK6 C9 H9 SING N N 39 WK6 C9 H10 SING N N 40 WK6 C10 H11 SING N N 41 WK6 C10 H12 SING N N 42 WK6 N2 H13 SING N N 43 WK6 C12 H14 SING N N 44 WK6 C13 H15 SING N N 45 WK6 C13 H16 SING N N 46 WK6 N3 H17 SING N N 47 WK6 C15 H18 SING N N 48 WK6 C15 H19 SING N N 49 WK6 O4 H24 SING N N 50 WK6 C17 H20 SING N N 51 WK6 O6 H25 SING N N 52 WK6 N4 H23 SING N N 53 WK6 N4 H21 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WK6 SMILES ACDLabs 12.01 "O=C(O)C(N)CCC(=O)NC(CSC(=S)NCc1ccccc1)C(=O)NCC(=O)O" WK6 InChI InChI 1.06 "InChI=1S/C18H24N4O6S2/c19-12(17(27)28)6-7-14(23)22-13(16(26)20-9-15(24)25)10-30-18(29)21-8-11-4-2-1-3-5-11/h1-5,12-13H,6-10,19H2,(H,20,26)(H,21,29)(H,22,23)(H,24,25)(H,27,28)/t12-,13+/m0/s1" WK6 InChIKey InChI 1.06 MGUPJNNTVYXHBZ-QWHCGFSZSA-N WK6 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@H](CSC(=S)NCc1ccccc1)C(=O)NCC(O)=O)C(O)=O" WK6 SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CSC(=S)NCc1ccccc1)C(=O)NCC(O)=O)C(O)=O" WK6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=S)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N" WK6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=S)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WK6 "SYSTEMATIC NAME" ACDLabs 12.01 "L-gamma-glutamyl-S-(benzylcarbamothioyl)-L-cysteinylglycine" WK6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-[(phenylmethyl)carbamothioylsulfanyl]propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WK6 "Create component" 2023-10-05 RCSB WK6 "Initial release" 2025-03-19 RCSB #