data_WK9 # _chem_comp.id WK9 _chem_comp.name ;(1R,2S)-2-{[(2M)-4'-(methoxycarbonyl)-4,5-dihydro-2'H,3H-[2,3'-bi-1lambda~4~-thiophen]-5'-yl]carbamoyl}cyclohexane-1-carboxylic acid ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-15 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.525 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WK9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G0F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WK9 C1 C1 C 0 1 N N N 4.179 7.510 20.953 1.402 -0.029 -0.051 C1 WK9 1 WK9 C2 C2 C 0 1 N N N 4.152 7.579 19.520 0.108 0.295 0.093 C2 WK9 2 WK9 C3 C3 C 0 1 N N N 2.917 7.079 21.469 2.400 0.973 0.329 C3 WK9 3 WK9 N4 N1 N 0 1 N N N 5.224 7.994 18.768 -0.912 -0.530 -0.217 N4 WK9 4 WK9 C5 C4 C 0 1 N N N 5.171 8.011 17.366 -2.182 -0.086 -0.145 C5 WK9 5 WK9 S6 S1 S 0 1 N N N 2.663 7.155 18.857 -0.079 1.732 0.659 S6 WK9 6 WK9 C7 C5 C 0 1 N N N 2.021 6.928 20.400 1.675 2.211 0.824 C7 WK9 7 WK9 C8 C6 C 0 1 N N N 2.493 6.922 22.869 3.717 0.824 0.253 C8 WK9 8 WK9 C9 C7 C 0 1 N N N 5.351 7.911 21.677 1.803 -1.343 -0.566 C9 WK9 9 WK9 C10 C8 C 0 1 N N S 6.407 8.444 16.645 -3.323 -1.009 -0.491 C10 WK9 10 WK9 C11 C9 C 0 1 N N R 7.298 7.194 16.400 -4.649 -0.263 -0.327 C11 WK9 11 WK9 C12 C10 C 0 1 N N N 6.560 6.135 15.624 -4.672 0.930 -1.246 C12 WK9 12 WK9 S13 S2 S 0 1 N N N 0.989 7.543 23.358 4.444 -0.410 -0.372 S13 WK9 13 WK9 O14 O1 O 0 1 N N N 4.180 7.666 16.731 -2.408 1.054 0.199 O14 WK9 14 WK9 C15 C11 C 0 1 N N N 3.193 6.283 23.925 4.727 1.820 0.750 C15 WK9 15 WK9 C16 C12 C 0 1 N N N 1.191 6.984 24.920 6.092 0.349 -0.636 C16 WK9 16 WK9 O17 O2 O 0 1 N N N 6.389 8.282 21.140 1.709 -1.585 -1.754 O17 WK9 17 WK9 O18 O3 O 0 1 N N N 6.054 5.116 16.029 -3.724 1.161 -1.959 O18 WK9 18 WK9 C19 C13 C 0 1 N N N 2.405 6.312 25.126 6.166 1.310 0.581 C19 WK9 19 WK9 C20 C14 C 0 1 N N N 8.455 7.748 18.531 -4.772 -1.006 2.056 C20 WK9 20 WK9 C21 C15 C 0 1 N N N 8.108 9.035 18.375 -3.446 -1.751 1.892 C21 WK9 21 WK9 O22 O4 O 0 1 N N N 6.514 6.429 14.383 -5.744 1.737 -1.273 O22 WK9 22 WK9 O23 O5 O 0 1 N N N 5.294 7.813 23.012 2.275 -2.282 0.279 O23 WK9 23 WK9 C24 C16 C 0 1 N N N 7.140 9.551 17.386 -3.300 -2.221 0.443 C24 WK9 24 WK9 C25 C17 C 0 1 N N N 7.868 6.642 17.690 -4.795 0.206 1.122 C25 WK9 25 WK9 C26 C18 C 0 1 N N N 6.485 8.169 23.677 2.652 -3.559 -0.300 C26 WK9 26 WK9 H27 H1 H 0 1 N N N 6.060 8.290 19.230 -0.731 -1.442 -0.492 H27 WK9 27 WK9 H1 H2 H 0 1 N N N 1.611 5.908 20.447 1.925 2.415 1.865 H1 WK9 28 WK9 H28 H3 H 0 1 N N N 1.209 7.657 20.537 1.903 3.071 0.194 H28 WK9 29 WK9 H29 H4 H 0 1 N N N 6.111 8.836 15.661 -3.219 -1.343 -1.523 H29 WK9 30 WK9 H30 H5 H 0 1 N N N 8.146 7.523 15.782 -5.474 -0.930 -0.577 H30 WK9 31 WK9 H2 H6 H 0 1 N N N 3.396 5.238 23.648 4.612 2.750 0.193 H2 WK9 32 WK9 H31 H7 H 0 1 N N N 4.144 6.807 24.101 4.542 2.016 1.806 H31 WK9 33 WK9 H32 H8 H 0 1 N N N 1.150 7.844 25.605 6.882 -0.401 -0.596 H32 WK9 34 WK9 H3 H9 H 0 1 N N N 0.368 6.292 25.150 6.125 0.902 -1.575 H3 WK9 35 WK9 H4 H10 H 0 1 N N N 2.195 5.280 25.442 6.841 2.139 0.369 H4 WK9 36 WK9 H33 H11 H 0 1 N N N 2.972 6.829 25.915 6.487 0.773 1.474 H33 WK9 37 WK9 H5 H12 H 0 1 N N N 9.543 7.704 18.377 -5.597 -1.673 1.805 H5 WK9 38 WK9 H34 H13 H 0 1 N N N 8.222 7.494 19.576 -4.876 -0.672 3.088 H34 WK9 39 WK9 H35 H14 H 0 1 N N N 7.719 9.351 19.354 -2.621 -1.084 2.142 H35 WK9 40 WK9 H6 H15 H 0 1 N N N 9.048 9.566 18.165 -3.430 -2.615 2.557 H6 WK9 41 WK9 H36 H16 H 0 1 N N N 6.049 5.747 13.913 -5.712 2.490 -1.879 H36 WK9 42 WK9 H38 H17 H 0 1 N N N 7.682 10.166 16.652 -4.125 -2.888 0.192 H38 WK9 43 WK9 H37 H18 H 0 1 N N N 6.400 10.173 17.910 -2.356 -2.751 0.326 H37 WK9 44 WK9 H39 H19 H 0 1 N N N 7.066 6.145 18.256 -3.970 0.873 1.372 H39 WK9 45 WK9 H40 H20 H 0 1 N N N 8.656 5.912 17.453 -5.740 0.737 1.239 H40 WK9 46 WK9 H43 H21 H 0 1 N N N 6.346 8.059 24.763 1.785 -4.009 -0.784 H43 WK9 47 WK9 H42 H22 H 0 1 N N N 7.302 7.512 23.343 3.440 -3.405 -1.037 H42 WK9 48 WK9 H41 H23 H 0 1 N N N 6.737 9.214 23.444 3.014 -4.222 0.486 H41 WK9 49 WK9 H7 H24 H 0 1 N N N 2.094 8.110 18.184 -0.484 2.431 -0.417 H7 WK9 50 WK9 H8 H25 H 0 1 N N N 0.909 8.838 23.275 4.647 -1.212 0.689 H8 WK9 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WK9 C1 C2 SING N N 1 WK9 C1 C3 DOUB N N 2 WK9 C2 N4 SING N N 3 WK9 N4 C5 SING N N 4 WK9 C2 S6 DOUB N N 5 WK9 C3 C7 SING N N 6 WK9 S6 C7 SING N N 7 WK9 C3 C8 SING N N 8 WK9 C1 C9 SING N N 9 WK9 C5 C10 SING N N 10 WK9 C10 C11 SING N N 11 WK9 C11 C12 SING N N 12 WK9 C8 S13 DOUB N N 13 WK9 C5 O14 DOUB N N 14 WK9 C8 C15 SING N N 15 WK9 S13 C16 SING N N 16 WK9 C9 O17 DOUB N N 17 WK9 C12 O18 DOUB N N 18 WK9 C15 C19 SING N N 19 WK9 C16 C19 SING N N 20 WK9 C20 C21 SING N N 21 WK9 C12 O22 SING N N 22 WK9 C9 O23 SING N N 23 WK9 C10 C24 SING N N 24 WK9 C21 C24 SING N N 25 WK9 C11 C25 SING N N 26 WK9 C20 C25 SING N N 27 WK9 O23 C26 SING N N 28 WK9 N4 H27 SING N N 29 WK9 C7 H1 SING N N 30 WK9 C7 H28 SING N N 31 WK9 C10 H29 SING N N 32 WK9 C11 H30 SING N N 33 WK9 C15 H2 SING N N 34 WK9 C15 H31 SING N N 35 WK9 C16 H32 SING N N 36 WK9 C16 H3 SING N N 37 WK9 C19 H4 SING N N 38 WK9 C19 H33 SING N N 39 WK9 C20 H5 SING N N 40 WK9 C20 H34 SING N N 41 WK9 C21 H35 SING N N 42 WK9 C21 H6 SING N N 43 WK9 O22 H36 SING N N 44 WK9 C24 H38 SING N N 45 WK9 C24 H37 SING N N 46 WK9 C25 H39 SING N N 47 WK9 C25 H40 SING N N 48 WK9 C26 H43 SING N N 49 WK9 C26 H42 SING N N 50 WK9 C26 H41 SING N N 51 WK9 S6 H7 SING N N 52 WK9 S13 H8 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WK9 SMILES ACDLabs 12.01 "O=C(O)C1CCCCC1C(=O)NC1=SCC(C2=SCCC2)=C1C(=O)OC" WK9 InChI InChI 1.06 "InChI=1S/C18H25NO5S2/c1-24-18(23)14-12(13-7-4-8-25-13)9-26-16(14)19-15(20)10-5-2-3-6-11(10)17(21)22/h10-11,25-26H,2-9H2,1H3,(H,19,20)(H,21,22)/t10-,11+/m0/s1" WK9 InChIKey InChI 1.06 HVVXCXSHYYKYKR-WDEREUQCSA-N WK9 SMILES_CANONICAL CACTVS 3.385 "COC(=O)C1=C(C[SH]=C1NC(=O)[C@H]2CCCC[C@H]2C(O)=O)C3=[SH]CCC3" WK9 SMILES CACTVS 3.385 "COC(=O)C1=C(C[SH]=C1NC(=O)[CH]2CCCC[CH]2C(O)=O)C3=[SH]CCC3" WK9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)C1=C(CS=C1NC(=O)[C@H]2CCCC[C@H]2C(=O)O)C3=SCCC3" WK9 SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)C1=C(CS=C1NC(=O)C2CCCCC2C(=O)O)C3=SCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WK9 "SYSTEMATIC NAME" ACDLabs 12.01 ;(1R,2S)-2-{[(2M)-4'-(methoxycarbonyl)-4,5-dihydro-2'H,3H-[2,3'-bi-1lambda~4~-thiophen]-5'-yl]carbamoyl}cyclohexane-1-carboxylic acid ; WK9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[3-(3,4-dihydro-2~{H}-thiophen-5-yl)-4-methoxycarbonyl-2~{H}-thiophen-5-yl]carbamoyl]cyclohexane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WK9 "Create component" 2023-05-15 RCSB WK9 "Initial release" 2023-06-14 RCSB #