data_WKF # _chem_comp.id WKF _chem_comp.name "4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H39 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-06 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 637.794 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WKF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QQ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WKF N3 N1 N 0 1 N N N N N N 21.920 -37.352 20.815 2.865 -1.153 -0.057 N3 WKF 1 WKF C4 C1 C 0 1 Y N N N N N 22.922 -36.910 21.680 3.226 -2.452 -0.422 C4 WKF 2 WKF C5 C2 C 0 1 Y N N N N N 24.219 -37.371 21.684 2.444 -3.169 -1.299 C5 WKF 3 WKF C6 C3 C 0 1 Y N N N N N 25.174 -36.768 22.484 2.792 -4.465 -1.671 C6 WKF 4 WKF C7 C4 C 0 1 Y N N N N N 24.856 -35.712 23.285 3.914 -5.058 -1.178 C7 WKF 5 WKF C8 C5 C 0 1 Y N N N N N 23.534 -35.201 23.325 4.739 -4.359 -0.281 C8 WKF 6 WKF C13 C6 C 0 1 Y N N N N N 23.082 -34.203 24.216 5.905 -4.944 0.248 C13 WKF 7 WKF C15 C7 C 0 1 N N N N N N 20.157 -37.123 18.645 0.723 1.560 -1.489 C15 WKF 8 WKF C17 C8 C 0 1 N N N N N N 21.340 -37.262 16.467 -1.071 0.778 0.065 C17 WKF 9 WKF C20 C9 C 0 1 N N N N N N 22.282 -35.005 13.497 -4.719 -0.148 -0.092 C20 WKF 10 WKF C21 C10 C 0 1 N N N N N N 22.982 -33.850 14.202 -5.955 0.651 -0.512 C21 WKF 11 WKF C22 C11 C 0 1 N N N N N N 24.204 -33.333 13.467 -7.200 -0.229 -0.380 C22 WKF 12 WKF C26 C12 C 0 1 N N R N N N 26.570 -30.292 14.029 -10.939 0.423 -0.313 C26 WKF 13 WKF C28 C13 C 0 1 N N S N N N 26.291 -31.787 13.684 -9.691 -0.324 -0.798 C28 WKF 14 WKF C11 C14 C 0 1 Y N N N N N 20.884 -34.534 23.440 6.266 -2.914 1.454 C11 WKF 15 WKF C12 C15 C 0 1 Y N N N N N 21.762 -33.876 24.271 6.660 -4.206 1.115 C12 WKF 16 WKF C14 C16 C 0 1 N N N N N N 20.736 -38.492 19.082 1.787 1.023 -0.531 C14 WKF 17 WKF C16 C17 C 0 1 N N N N N N 21.043 -36.366 17.655 -0.545 0.712 -1.370 C16 WKF 18 WKF C19 C18 C 0 1 N N N N N N 21.342 -35.739 14.430 -3.474 0.731 -0.224 C19 WKF 19 WKF C2 C19 C 0 1 N N N N N N 22.009 -38.276 19.855 2.105 -0.408 -0.884 C2 WKF 20 WKF C23 C20 C 0 1 N N S N N N 24.879 -32.163 14.168 -8.435 0.570 -0.800 C23 WKF 21 WKF C25 C21 C 0 1 N N N N N N 25.329 -29.669 14.683 -10.639 1.889 0.057 C25 WKF 22 WKF C30 C22 C 0 1 N N N N N N 26.849 -30.627 11.731 -10.500 -1.317 1.110 C30 WKF 23 WKF C32 C23 C 0 1 N N N N N N 22.060 -38.524 16.898 -0.006 0.241 1.023 C32 WKF 24 WKF C33 C24 C 0 1 N N N N N N 21.147 -39.310 17.837 1.262 1.089 0.905 C33 WKF 25 WKF C34 C25 C 0 1 N N N N N N 19.732 -39.221 19.974 3.036 1.858 -0.648 C34 WKF 26 WKF C36 C26 C 0 1 Y N N N N N 18.464 -39.065 22.093 5.177 2.499 0.163 C36 WKF 27 WKF C37 C27 C 0 1 Y N N N N N 18.417 -38.348 23.331 6.455 2.008 0.510 C37 WKF 28 WKF C39 C28 C 0 1 Y N N N N N 19.275 -36.698 24.681 7.812 0.276 1.203 C39 WKF 29 WKF C40 C29 C 0 1 Y N N N N N 18.396 -36.993 25.707 8.946 1.085 1.175 C40 WKF 30 WKF C41 C30 C 0 1 Y N N N N N 17.500 -38.004 25.529 8.839 2.396 0.806 C41 WKF 31 WKF C42 C31 C 0 1 Y N N N N N 17.478 -38.728 24.318 7.565 2.886 0.460 C42 WKF 32 WKF C43 C32 C 0 1 Y N N N N N 16.608 -39.809 24.045 7.380 4.222 0.068 C43 WKF 33 WKF C44 C33 C 0 1 Y N N N N N 16.676 -40.474 22.853 6.136 4.667 -0.261 C44 WKF 34 WKF C45 C34 C 0 1 Y N N N N N 17.593 -40.112 21.878 5.035 3.815 -0.215 C45 WKF 35 WKF C9 C35 C 0 1 Y N N N N N 22.556 -35.812 22.515 4.399 -3.038 0.102 C9 WKF 36 WKF N10 N2 N 0 1 Y N N N N N 21.233 -35.474 22.577 5.183 -2.369 0.952 N10 WKF 37 WKF N18 N3 N 0 1 N N N N N N 22.133 -36.536 15.413 -2.288 -0.036 0.179 N18 WKF 38 WKF N27 N4 N 0 1 N N N N N N 26.957 -29.733 12.743 -11.353 -0.306 0.896 N27 WKF 39 WKF N29 N5 N 0 1 N N N N N N 26.483 -31.821 12.243 -9.516 -1.402 0.188 N29 WKF 40 WKF N35 N6 N 0 1 N N N N N N 19.415 -38.611 21.147 4.065 1.653 0.198 N35 WKF 41 WKF N38 N7 N 0 1 Y N N N N N 19.311 -37.333 23.519 6.628 0.737 0.880 N38 WKF 42 WKF O1 O1 O 0 1 N N N N N N 23.020 -38.916 19.602 1.676 -0.888 -1.911 O1 WKF 43 WKF O31 O2 O 0 1 N N N N N N 27.032 -30.393 10.540 -10.600 -2.087 2.046 O31 WKF 44 WKF O46 O3 O 0 1 N N N N N N 19.265 -40.297 19.628 3.115 2.715 -1.503 O46 WKF 45 WKF S24 S1 S 0 1 N N N N N N 23.955 -30.598 13.968 -8.845 1.847 0.460 S24 WKF 46 WKF H1 H1 H 0 1 N N N N N N 21.024 -36.923 20.928 3.159 -0.788 0.792 H1 WKF 47 WKF H2 H2 H 0 1 N N N N N N 24.493 -38.208 21.059 1.549 -2.721 -1.704 H2 WKF 48 WKF H3 H3 H 0 1 N N N N N N 26.188 -37.140 22.473 2.162 -5.008 -2.360 H3 WKF 49 WKF H4 H4 H 0 1 N N N N N N 25.621 -35.258 23.897 4.170 -6.064 -1.476 H4 WKF 50 WKF H5 H5 H 0 1 N N N N N N 23.788 -33.696 24.857 6.195 -5.947 -0.026 H5 WKF 51 WKF H6 H6 H 0 1 N N N N N N 20.027 -36.499 19.542 0.493 2.595 -1.234 H6 WKF 52 WKF H7 H7 H 0 1 N N N N N N 19.178 -37.295 18.173 1.097 1.513 -2.512 H7 WKF 53 WKF H8 H8 H 0 1 N N N N N N 20.379 -37.559 16.022 -1.301 1.813 0.320 H8 WKF 54 WKF H9 H9 H 0 1 N N N N N N 21.705 -34.609 12.648 -4.829 -0.470 0.943 H9 WKF 55 WKF H10 H10 H 0 1 N N N N N N 23.041 -35.710 13.127 -4.616 -1.023 -0.735 H10 WKF 56 WKF H11 H11 H 0 1 N N N N N N 23.296 -34.192 15.199 -6.058 1.525 0.131 H11 WKF 57 WKF H12 H12 H 0 1 N N N N N N 22.265 -33.022 14.307 -5.845 0.972 -1.548 H12 WKF 58 WKF H13 H13 H 0 1 N N N N N N 23.895 -33.007 12.463 -7.097 -1.103 -1.023 H13 WKF 59 WKF H14 H14 H 0 1 N N N N N N 24.931 -34.154 13.379 -7.310 -0.550 0.656 H14 WKF 60 WKF H15 H15 H 0 1 N N N N N N 27.413 -30.242 14.734 -11.724 0.378 -1.068 H15 WKF 61 WKF H16 H16 H 0 1 N N N N N N 27.034 -32.421 14.190 -9.861 -0.738 -1.791 H16 WKF 62 WKF H17 H17 H 0 1 N N N N N N 19.840 -34.265 23.496 6.872 -2.342 2.141 H17 WKF 63 WKF H18 H18 H 0 1 N N N N N N 21.411 -33.116 24.953 7.561 -4.625 1.539 H18 WKF 64 WKF H19 H19 H 0 1 N N N N N N 21.985 -36.082 18.147 -1.304 1.095 -2.053 H19 WKF 65 WKF H20 H20 H 0 1 N N N N N N 20.521 -35.460 17.312 -0.315 -0.323 -1.626 H20 WKF 66 WKF H21 H21 H 0 1 N N N N N N 20.717 -35.011 14.968 -3.365 1.053 -1.260 H21 WKF 67 WKF H22 H22 H 0 1 N N N N N N 20.699 -36.413 13.845 -3.577 1.605 0.419 H22 WKF 68 WKF H23 H23 H 0 1 N N N N N N 24.911 -32.358 15.250 -8.286 1.024 -1.780 H23 WKF 69 WKF H24 H24 H 0 1 N N N N N N 25.250 -28.600 14.436 -10.824 2.547 -0.792 H24 WKF 70 WKF H25 H25 H 0 1 N N N N N N 25.358 -29.791 15.776 -11.230 2.199 0.919 H25 WKF 71 WKF H26 H26 H 0 1 N N N N N N 22.297 -39.135 16.015 -0.380 0.288 2.046 H26 WKF 72 WKF H27 H27 H 0 1 N N N N N N 22.990 -38.259 17.422 0.224 -0.794 0.768 H27 WKF 73 WKF H28 H28 H 0 1 N N N N N N 20.238 -39.597 17.287 2.020 0.706 1.587 H28 WKF 74 WKF H29 H29 H 0 1 N N N N N N 21.677 -40.215 18.168 1.032 2.124 1.160 H29 WKF 75 WKF H30 H30 H 0 1 N N N N N N 19.980 -35.895 24.838 7.912 -0.758 1.497 H30 WKF 76 WKF H31 H31 H 0 1 N N N N N N 18.419 -36.433 26.630 9.908 0.677 1.446 H31 WKF 77 WKF H32 H32 H 0 1 N N N N N N 16.805 -38.252 26.317 9.707 3.038 0.779 H32 WKF 78 WKF H33 H33 H 0 1 N N N N N N 15.883 -40.112 24.786 8.223 4.896 0.029 H33 WKF 79 WKF H34 H34 H 0 1 N N N N N N 16.002 -41.297 22.667 6.000 5.696 -0.561 H34 WKF 80 WKF H35 H35 H 0 1 N N N N N N 17.625 -40.654 20.944 4.059 4.192 -0.481 H35 WKF 81 WKF H36 H36 H 0 1 N N N N N N 22.658 -37.217 14.902 -2.393 -0.400 1.114 H36 WKF 82 WKF H38 H38 H 0 1 N N N N N N 27.269 -28.791 12.619 -12.119 -0.089 1.451 H38 WKF 83 WKF H39 H39 H 0 1 N N N N N N 26.357 -32.644 11.689 -8.810 -2.067 0.178 H39 WKF 84 WKF H40 H40 H 0 1 N N N N N N 19.899 -37.762 21.362 4.035 0.919 0.831 H40 WKF 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WKF O31 C30 DOUB N N 1 WKF C30 N29 SING N N 2 WKF C30 N27 SING N N 3 WKF N29 C28 SING N N 4 WKF N27 C26 SING N N 5 WKF C22 C23 SING N N 6 WKF C22 C21 SING N N 7 WKF C20 C21 SING N N 8 WKF C20 C19 SING N N 9 WKF C28 C26 SING N N 10 WKF C28 C23 SING N N 11 WKF S24 C23 SING N N 12 WKF S24 C25 SING N N 13 WKF C26 C25 SING N N 14 WKF C19 N18 SING N N 15 WKF N18 C17 SING N N 16 WKF C17 C32 SING N N 17 WKF C17 C16 SING N N 18 WKF C32 C33 SING N N 19 WKF C16 C15 SING N N 20 WKF C33 C14 SING N N 21 WKF C15 C14 SING N N 22 WKF C14 C2 SING N N 23 WKF C14 C34 SING N N 24 WKF O1 C2 DOUB N N 25 WKF O46 C34 DOUB N N 26 WKF C2 N3 SING N N 27 WKF C34 N35 SING N N 28 WKF N3 C4 SING N N 29 WKF N35 C36 SING N N 30 WKF C4 C5 DOUB Y N 31 WKF C4 C9 SING Y N 32 WKF C5 C6 SING Y N 33 WKF C45 C36 DOUB Y N 34 WKF C45 C44 SING Y N 35 WKF C36 C37 SING Y N 36 WKF C6 C7 DOUB Y N 37 WKF C9 N10 DOUB Y N 38 WKF C9 C8 SING Y N 39 WKF N10 C11 SING Y N 40 WKF C44 C43 DOUB Y N 41 WKF C7 C8 SING Y N 42 WKF C8 C13 DOUB Y N 43 WKF C37 N38 DOUB Y N 44 WKF C37 C42 SING Y N 45 WKF C11 C12 DOUB Y N 46 WKF N38 C39 SING Y N 47 WKF C43 C42 SING Y N 48 WKF C13 C12 SING Y N 49 WKF C42 C41 DOUB Y N 50 WKF C39 C40 DOUB Y N 51 WKF C41 C40 SING Y N 52 WKF N3 H1 SING N N 53 WKF C5 H2 SING N N 54 WKF C6 H3 SING N N 55 WKF C7 H4 SING N N 56 WKF C13 H5 SING N N 57 WKF C15 H6 SING N N 58 WKF C15 H7 SING N N 59 WKF C17 H8 SING N N 60 WKF C20 H9 SING N N 61 WKF C20 H10 SING N N 62 WKF C21 H11 SING N N 63 WKF C21 H12 SING N N 64 WKF C22 H13 SING N N 65 WKF C22 H14 SING N N 66 WKF C26 H15 SING N N 67 WKF C28 H16 SING N N 68 WKF C11 H17 SING N N 69 WKF C12 H18 SING N N 70 WKF C16 H19 SING N N 71 WKF C16 H20 SING N N 72 WKF C19 H21 SING N N 73 WKF C19 H22 SING N N 74 WKF C23 H23 SING N N 75 WKF C25 H24 SING N N 76 WKF C25 H25 SING N N 77 WKF C32 H26 SING N N 78 WKF C32 H27 SING N N 79 WKF C33 H28 SING N N 80 WKF C33 H29 SING N N 81 WKF C39 H30 SING N N 82 WKF C40 H31 SING N N 83 WKF C41 H32 SING N N 84 WKF C43 H33 SING N N 85 WKF C44 H34 SING N N 86 WKF C45 H35 SING N N 87 WKF N18 H36 SING N N 88 WKF N27 H38 SING N N 89 WKF N29 H39 SING N N 90 WKF N35 H40 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WKF InChI InChI 1.06 "InChI=1S/C35H39N7O3S/c43-32(39-25-11-3-7-22-9-5-19-37-29(22)25)35(33(44)40-26-12-4-8-23-10-6-20-38-30(23)26)16-14-24(15-17-35)36-18-2-1-13-28-31-27(21-46-28)41-34(45)42-31/h3-12,19-20,24,27-28,31,36H,1-2,13-18,21H2,(H,39,43)(H,40,44)(H2,41,42,45)/t27-,28-,31-/m0/s1" WKF InChIKey InChI 1.06 RCUCAUCKUVJHRT-QYDYLWNGSA-N WKF SMILES_CANONICAL CACTVS 3.385 "O=C1N[C@H]2CS[C@@H](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[C@H]2N1" WKF SMILES CACTVS 3.385 "O=C1N[CH]2CS[CH](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[CH]2N1" WKF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7" WKF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCCC4C5C(CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7" # _pdbx_chem_comp_identifier.comp_id WKF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WKF "Create component" 2023-10-06 PDBE WKF "Initial release" 2024-02-07 RCSB #