data_WKL # _chem_comp.id WKL _chem_comp.name "N-(2-aminoethyl)-N-(cyanomethyl)thiophene-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-20 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 209.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WKL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FK9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WKL N1 N1 N 0 1 N N N 1.854 13.194 -36.173 4.579 0.412 0.536 N1 WKL 1 WKL C7 C1 C 0 1 N N N -2.133 12.350 -35.936 0.567 -1.111 -1.113 C7 WKL 2 WKL C8 C2 C 0 1 N N N -1.384 11.308 -36.151 0.460 -2.024 0.037 C8 WKL 3 WKL N2 N2 N 0 1 N N N -0.741 10.530 -36.295 0.378 -2.728 0.924 N2 WKL 4 WKL C1 C3 C 0 1 Y N N -0.170 15.465 -38.592 -2.237 1.612 0.339 C1 WKL 5 WKL C5 C4 C 0 1 N N N -0.440 14.525 -35.870 2.476 0.512 -0.716 C5 WKL 6 WKL C6 C5 C 0 1 N N N 0.827 13.941 -36.130 3.146 0.094 0.595 C6 WKL 7 WKL C4 C6 C 0 1 N N N -2.120 14.556 -37.414 0.174 1.106 -0.182 C4 WKL 8 WKL C3 C7 C 0 1 Y N N -0.785 17.207 -39.847 -3.477 -0.306 0.178 C3 WKL 9 WKL C2 C8 C 0 1 Y N N -1.416 15.510 -38.288 -1.236 0.748 -0.007 C2 WKL 10 WKL N N3 N 0 1 N N N -1.567 13.822 -36.326 1.047 0.196 -0.657 N WKL 11 WKL O O1 O 0 1 N N N -3.136 14.319 -37.601 0.557 2.227 0.100 O WKL 12 WKL S S1 S 0 1 Y N N -2.098 16.758 -39.136 -1.911 -0.864 -0.206 S WKL 13 WKL C C9 C 0 1 Y N N 0.236 16.441 -39.508 -3.467 1.006 0.440 C WKL 14 WKL H1 H1 H 0 1 N N N 2.545 13.610 -36.765 5.044 0.145 1.390 H1 WKL 15 WKL H2 H2 H 0 1 N N N 2.226 13.086 -35.251 5.013 -0.024 -0.264 H2 WKL 16 WKL H4 H4 H 0 1 N N N -2.360 12.367 -34.860 1.268 -1.522 -1.840 H4 WKL 17 WKL H5 H5 H 0 1 N N N -3.063 12.201 -36.505 -0.413 -0.996 -1.578 H5 WKL 18 WKL H6 H6 H 0 1 N N N 0.508 14.735 -38.176 -2.077 2.664 0.518 H6 WKL 19 WKL H7 H7 H 0 1 N N N -0.453 15.517 -36.344 2.605 1.585 -0.863 H7 WKL 20 WKL H8 H8 H 0 1 N N N -0.537 14.638 -34.780 2.934 -0.026 -1.546 H8 WKL 21 WKL H9 H9 H 0 1 N N N 1.390 14.830 -35.808 3.017 -0.978 0.743 H9 WKL 22 WKL H10 H10 H 0 1 N N N 0.700 13.963 -37.222 2.688 0.633 1.425 H10 WKL 23 WKL H11 H11 H 0 1 N N N -0.719 18.040 -40.531 -4.358 -0.930 0.212 H11 WKL 24 WKL H12 H12 H 0 1 N N N 1.242 16.552 -39.885 -4.361 1.551 0.705 H12 WKL 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WKL C3 C DOUB Y N 1 WKL C3 S SING Y N 2 WKL C C1 SING Y N 3 WKL S C2 SING Y N 4 WKL C1 C2 DOUB Y N 5 WKL C2 C4 SING N N 6 WKL O C4 DOUB N N 7 WKL C4 N SING N N 8 WKL N C7 SING N N 9 WKL N C5 SING N N 10 WKL N2 C8 TRIP N N 11 WKL N1 C6 SING N N 12 WKL C8 C7 SING N N 13 WKL C6 C5 SING N N 14 WKL N1 H1 SING N N 15 WKL N1 H2 SING N N 16 WKL C7 H4 SING N N 17 WKL C7 H5 SING N N 18 WKL C1 H6 SING N N 19 WKL C5 H7 SING N N 20 WKL C5 H8 SING N N 21 WKL C6 H9 SING N N 22 WKL C6 H10 SING N N 23 WKL C3 H11 SING N N 24 WKL C H12 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WKL SMILES ACDLabs 12.01 "O=C(N(CCN)CC#N)c1cccs1" WKL InChI InChI 1.06 "InChI=1S/C9H11N3OS/c10-3-5-12(6-4-11)9(13)8-2-1-7-14-8/h1-2,7H,3,5-6,10H2" WKL InChIKey InChI 1.06 XDHJNESZDIBWEM-UHFFFAOYSA-N WKL SMILES_CANONICAL CACTVS 3.385 "NCCN(CC#N)C(=O)c1sccc1" WKL SMILES CACTVS 3.385 "NCCN(CC#N)C(=O)c1sccc1" WKL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)C(=O)N(CCN)CC#N" WKL SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1)C(=O)N(CCN)CC#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WKL "SYSTEMATIC NAME" ACDLabs 12.01 "N-(2-aminoethyl)-N-(cyanomethyl)thiophene-2-carboxamide" WKL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(2-azanylethyl)-~{N}-(cyanomethyl)thiophene-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WKL "Create component" 2022-09-20 RCSB WKL "Initial release" 2022-11-02 RCSB #