data_WKO # _chem_comp.id WKO _chem_comp.name 2-O-acetyl-beta-D-xylopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H12 O6" _chem_comp.mon_nstd_parent_comp_id XYP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-06 _chem_comp.pdbx_modified_date 2025-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 192.167 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WKO C4 C1 C 0 1 N N R N N N -6.904 -27.126 51.272 2.281 -0.305 -0.333 C4 WKO 1 WKO C5 C2 C 0 1 N N N N N N -5.837 -27.832 52.051 2.417 1.132 0.179 C5 WKO 2 WKO C3 C3 C 0 1 N N S N N N -8.234 -27.479 51.871 1.026 -0.938 0.276 C3 WKO 3 WKO C1 C4 C 0 1 N N R N N N -7.043 -27.331 54.042 0.041 1.351 0.422 C1 WKO 4 WKO O5 O1 O 0 1 N N N N N N -5.802 -27.243 53.340 1.240 1.869 -0.157 O5 WKO 5 WKO C2 C5 C 0 1 N N R N N N -8.276 -26.922 53.263 -0.191 -0.077 -0.079 C2 WKO 6 WKO O2 O2 O 0 1 N N N N N N -9.447 -27.493 53.892 -1.376 -0.627 0.553 O2 WKO 7 WKO CA1 C6 C 0 1 N N N N N N -10.241 -26.692 54.554 -2.546 -0.441 -0.078 CA1 WKO 8 WKO OA1 O3 O 0 1 N N N N N N -10.116 -25.451 54.664 -2.578 0.162 -1.124 OA1 WKO 9 WKO CA2 C7 C 0 1 N N N N N N -11.369 -27.503 55.126 -3.819 -0.983 0.519 CA2 WKO 10 WKO O3 O4 O 0 1 N N N N N N -9.344 -27.022 51.099 0.850 -2.254 -0.253 O3 WKO 11 WKO O4 O5 O 0 1 N N N N N N -6.717 -27.592 49.954 3.431 -1.060 0.053 O4 WKO 12 WKO H4 H1 H 0 1 N N N N N N -6.748 -26.039 51.331 2.195 -0.298 -1.419 H4 WKO 13 WKO H52 H2 H 0 1 N N N N N N -6.075 -28.903 52.132 2.543 1.122 1.261 H52 WKO 14 WKO H51 H3 H 0 1 N N N N N N -4.863 -27.709 51.554 3.285 1.602 -0.284 H51 WKO 15 WKO H3 H4 H 0 1 N N N N N N -8.286 -28.575 51.947 1.132 -0.990 1.359 H3 WKO 16 WKO H1 H5 H 0 1 N N N N N N -7.187 -28.352 54.425 0.136 1.344 1.508 H1 WKO 17 WKO H2 H7 H 0 1 N N N N N N -8.348 -25.825 53.228 -0.326 -0.067 -1.161 H2 WKO 18 WKO HA3 H8 H 0 1 N N N N N N -12.067 -26.838 55.656 -3.593 -1.493 1.456 HA3 WKO 19 WKO HA2 H9 H 0 1 N N N N N N -11.900 -28.018 54.312 -4.510 -0.162 0.710 HA2 WKO 20 WKO HA1 H10 H 0 1 N N N N N N -10.966 -28.247 55.829 -4.275 -1.688 -0.177 HA1 WKO 21 WKO HO3 H11 H 0 1 N Y N N N N -10.154 -27.274 51.527 1.588 -2.852 -0.071 HO3 WKO 22 WKO HO4 H12 H 0 1 N Y N N N N -5.857 -27.331 49.644 4.264 -0.715 -0.298 HO4 WKO 23 WKO O1 O6 O 0 1 N Y N N N N -6.969 -26.420 55.094 -1.065 2.174 0.046 O1 WKO 24 WKO HO1 H12 H 0 1 N Y N N N N -6.211 -26.617 55.631 -0.985 3.094 0.331 HO1 WKO 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WKO O4 C4 SING N N 1 WKO O3 C3 SING N N 2 WKO C4 C3 SING N N 3 WKO C4 C5 SING N N 4 WKO C3 C2 SING N N 5 WKO C5 O5 SING N N 6 WKO C2 O2 SING N N 7 WKO C2 C1 SING N N 8 WKO O5 C1 SING N N 9 WKO O2 CA1 SING N N 10 WKO CA1 OA1 DOUB N N 11 WKO CA1 CA2 SING N N 12 WKO C4 H4 SING N N 13 WKO C5 H52 SING N N 14 WKO C5 H51 SING N N 15 WKO C3 H3 SING N N 16 WKO C1 H1 SING N N 17 WKO C2 H2 SING N N 18 WKO CA2 HA3 SING N N 19 WKO CA2 HA2 SING N N 20 WKO CA2 HA1 SING N N 21 WKO O3 HO3 SING N N 22 WKO O4 HO4 SING N N 23 WKO C1 O1 SING N N 24 WKO O1 HO1 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WKO SMILES ACDLabs 12.01 "OC1OCC(O)C(O)C1OC(C)=O" WKO InChI InChI 1.06 "InChI=1S/C7H12O6/c1-3(8)13-6-5(10)4(9)2-12-7(6)11/h4-7,9-11H,2H2,1H3/t4-,5+,6-,7-/m1/s1" WKO InChIKey InChI 1.06 CEACMPMINNIFFY-XZBKPIIZSA-N WKO SMILES_CANONICAL CACTVS 3.385 "CC(=O)O[C@H]1[C@H](O)OC[C@@H](O)[C@@H]1O" WKO SMILES CACTVS 3.385 "CC(=O)O[CH]1[CH](O)OC[CH](O)[CH]1O" WKO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)O[C@@H]1[C@H]([C@@H](CO[C@H]1O)O)O" WKO SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)OC1C(C(COC1O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WKO "SYSTEMATIC NAME" ACDLabs 12.01 2-O-acetyl-beta-D-xylopyranose WKO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{S},5~{R})-2,4,5-tris(oxidanyl)oxan-3-yl] ethanoate" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support WKO "CARBOHYDRATE ISOMER" D PDB ? WKO "CARBOHYDRATE RING" pyranose PDB ? WKO "CARBOHYDRATE ANOMER" beta PDB ? WKO "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 WKO 2-O-acetyl-beta-D-xylose PDB ? 2 WKO 2-O-acetyl-D-xylose PDB ? 3 WKO 2-O-acetyl-xylose PDB ? # _pdbx_chem_comp_related.comp_id WKO _pdbx_chem_comp_related.related_comp_id XYP _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 WKO C4 XYP C4 "Carbohydrate core" 2 WKO C5 XYP C5 "Carbohydrate core" 3 WKO C3 XYP C3 "Carbohydrate core" 4 WKO C1 XYP C1 "Carbohydrate core" 5 WKO O5 XYP O5 "Carbohydrate core" 6 WKO C2 XYP C2 "Carbohydrate core" 7 WKO O2 XYP O2 "Carbohydrate core" 8 WKO O3 XYP O3 "Carbohydrate core" 9 WKO O4 XYP O4 "Carbohydrate core" 10 WKO H4 XYP H4 "Carbohydrate core" 11 WKO H52 XYP H52 "Carbohydrate core" 12 WKO H51 XYP H51 "Carbohydrate core" 13 WKO H3 XYP H3 "Carbohydrate core" 14 WKO H1 XYP H1 "Carbohydrate core" 15 WKO H2 XYP H2 "Carbohydrate core" 16 WKO HO3 XYP HO3 "Carbohydrate core" 17 WKO HO4 XYP HO4 "Carbohydrate core" 18 WKO O1 XYP O1 "Carbohydrate core" 19 WKO HO1 XYP HO1 "Carbohydrate core" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WKO "Create component" 2023-10-06 RCSB WKO "Initial release" 2025-02-24 RCSB #