data_WKS # _chem_comp.id WKS _chem_comp.name "2,4-dimethyl-6-(piperazin-1-yl)pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-30 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 192.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WKS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RY9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WKS C10 C1 C 0 1 N N N -41.392 8.866 2.400 -1.774 -1.131 0.319 C10 WKS 1 WKS N12 N1 N 0 1 N N N -42.516 9.826 4.383 -3.859 -0.060 -0.386 N12 WKS 2 WKS C13 C2 C 0 1 N N N -41.363 9.639 5.179 -3.220 1.261 -0.305 C13 WKS 3 WKS C01 C3 C 0 1 N N N -35.486 9.761 4.262 3.316 2.274 0.127 C01 WKS 4 WKS C02 C4 C 0 1 Y N N -36.592 9.443 3.277 2.404 1.075 0.093 C02 WKS 5 WKS C03 C5 C 0 1 Y N N -37.857 9.209 3.737 1.042 1.228 0.269 C03 WKS 6 WKS C04 C6 C 0 1 Y N N -38.862 8.920 2.807 0.236 0.089 0.228 C04 WKS 7 WKS C06 C7 C 0 1 Y N N -37.342 9.084 1.136 2.110 -1.195 -0.141 C06 WKS 8 WKS C07 C8 C 0 1 N N N -37.020 8.998 -0.379 2.718 -2.555 -0.371 C07 WKS 9 WKS C11 C9 C 0 1 N N N -42.251 9.994 3.003 -3.273 -0.987 0.592 C11 WKS 10 WKS C14 C10 C 0 1 N N N -40.554 8.451 4.667 -1.721 1.117 -0.578 C14 WKS 11 WKS N05 N2 N 0 1 Y N N -38.577 8.859 1.519 0.806 -1.095 0.023 N05 WKS 12 WKS N08 N3 N 0 1 Y N N -36.352 9.360 1.979 2.897 -0.138 -0.113 N08 WKS 13 WKS N09 N4 N 0 1 N N N -40.188 8.660 3.236 -1.135 0.190 0.400 N09 WKS 14 WKS H1 H1 H 0 1 N N N -41.979 7.936 2.367 -1.332 -1.796 1.061 H1 WKS 15 WKS H2 H2 H 0 1 N N N -41.087 9.143 1.380 -1.624 -1.547 -0.678 H2 WKS 16 WKS H3 H3 H 0 1 N N N -42.994 10.641 4.711 -3.798 -0.434 -1.321 H3 WKS 17 WKS H5 H5 H 0 1 N N N -40.742 10.546 5.137 -3.662 1.926 -1.047 H5 WKS 18 WKS H6 H6 H 0 1 N N N -41.667 9.450 6.219 -3.370 1.677 0.691 H6 WKS 19 WKS H7 H7 H 0 1 N N N -34.538 9.894 3.720 3.655 2.444 1.149 H7 WKS 20 WKS H8 H8 H 0 1 N N N -35.732 10.687 4.803 4.178 2.092 -0.515 H8 WKS 21 WKS H9 H9 H 0 1 N N N -35.385 8.933 4.979 2.777 3.152 -0.228 H9 WKS 22 WKS H10 H10 H 0 1 N N N -38.076 9.246 4.794 0.612 2.205 0.434 H10 WKS 23 WKS H11 H11 H 0 1 N N N -37.935 8.745 -0.935 2.746 -2.763 -1.440 H11 WKS 24 WKS H12 H12 H 0 1 N N N -36.635 9.968 -0.728 3.731 -2.572 0.030 H12 WKS 25 WKS H13 H13 H 0 1 N N N -36.261 8.220 -0.549 2.115 -3.312 0.131 H13 WKS 26 WKS H14 H14 H 0 1 N N N -41.721 10.948 2.864 -3.754 -1.961 0.503 H14 WKS 27 WKS H15 H15 H 0 1 N N N -43.210 10.026 2.466 -3.423 -0.596 1.598 H15 WKS 28 WKS H16 H16 H 0 1 N N N -41.155 7.534 4.759 -1.571 0.726 -1.585 H16 WKS 29 WKS H17 H17 H 0 1 N N N -39.637 8.350 5.266 -1.240 2.091 -0.490 H17 WKS 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WKS C07 C06 SING N N 1 WKS C06 N05 DOUB Y N 2 WKS C06 N08 SING Y N 3 WKS N05 C04 SING Y N 4 WKS N08 C02 DOUB Y N 5 WKS C10 C11 SING N N 6 WKS C10 N09 SING N N 7 WKS C04 N09 SING N N 8 WKS C04 C03 DOUB Y N 9 WKS C11 N12 SING N N 10 WKS N09 C14 SING N N 11 WKS C02 C03 SING Y N 12 WKS C02 C01 SING N N 13 WKS N12 C13 SING N N 14 WKS C14 C13 SING N N 15 WKS C10 H1 SING N N 16 WKS C10 H2 SING N N 17 WKS N12 H3 SING N N 18 WKS C13 H5 SING N N 19 WKS C13 H6 SING N N 20 WKS C01 H7 SING N N 21 WKS C01 H8 SING N N 22 WKS C01 H9 SING N N 23 WKS C03 H10 SING N N 24 WKS C07 H11 SING N N 25 WKS C07 H12 SING N N 26 WKS C07 H13 SING N N 27 WKS C11 H14 SING N N 28 WKS C11 H15 SING N N 29 WKS C14 H16 SING N N 30 WKS C14 H17 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WKS SMILES ACDLabs 12.01 "C1CNCCN1c2cc(C)nc(n2)C" WKS InChI InChI 1.03 "InChI=1S/C10H16N4/c1-8-7-10(13-9(2)12-8)14-5-3-11-4-6-14/h7,11H,3-6H2,1-2H3" WKS InChIKey InChI 1.03 NARMKNJWXHFJFF-UHFFFAOYSA-N WKS SMILES_CANONICAL CACTVS 3.385 "Cc1cc(nc(C)n1)N2CCNCC2" WKS SMILES CACTVS 3.385 "Cc1cc(nc(C)n1)N2CCNCC2" WKS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)C)N2CCNCC2" WKS SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)C)N2CCNCC2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WKS "SYSTEMATIC NAME" ACDLabs 12.01 "2,4-dimethyl-6-(piperazin-1-yl)pyrimidine" WKS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,4-dimethyl-6-piperazin-1-yl-pyrimidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WKS "Create component" 2020-10-30 RCSB WKS "Initial release" 2020-11-11 RCSB ##