data_WKT # _chem_comp.id WKT _chem_comp.name 3-O-acetyl-beta-D-xylopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H12 O6" _chem_comp.mon_nstd_parent_comp_id XYP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-06 _chem_comp.pdbx_modified_date 2025-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 192.167 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WKT C4 C1 C 0 1 N N R N N N -7.756 -26.679 41.273 0.020 1.356 0.446 C4 WKT 1 WKT C5 C2 C 0 1 N N N N N N -6.858 -26.303 42.423 1.314 1.911 -0.155 C5 WKT 2 WKT C1 C3 C 0 1 N N R N N N -8.470 -26.942 43.982 2.269 -0.283 -0.316 C1 WKT 3 WKT O5 O1 O 0 1 N N N N N N -7.673 -25.857 43.502 2.402 1.049 0.184 O5 WKT 4 WKT C2 C4 C 0 1 N N R N N N -9.554 -27.047 42.958 1.013 -0.926 0.278 C2 WKT 5 WKT O2 O2 O 0 1 N N N N N N -10.618 -27.908 43.407 0.846 -2.238 -0.264 O2 WKT 6 WKT C3 C5 C 0 1 N N S N N N -8.903 -27.569 41.697 -0.206 -0.068 -0.073 C3 WKT 7 WKT O3 O3 O 0 1 N N N N N N -9.829 -27.525 40.605 -1.391 -0.629 0.549 O3 WKT 8 WKT CA1 C6 C 0 1 N N N N N N -10.376 -28.609 40.050 -2.560 -0.434 -0.081 CA1 WKT 9 WKT OA1 O4 O 0 1 N N N N N N -10.999 -28.579 38.966 -2.592 0.185 -1.118 OA1 WKT 10 WKT CA2 C7 C 0 1 N N N N N N -10.208 -29.886 40.829 -3.834 -0.988 0.505 CA2 WKT 11 WKT O4 O5 O 0 1 N N N N N N -6.906 -27.348 40.345 -1.079 2.184 0.060 O4 WKT 12 WKT H4 H1 H 0 1 N N N N N N -8.163 -25.762 40.821 0.100 1.339 1.533 H4 WKT 13 WKT H52 H2 H 0 1 N N N N N N -6.271 -27.178 42.738 1.217 1.965 -1.239 H52 WKT 14 WKT H51 H3 H 0 1 N N N N N N -6.177 -25.497 42.114 1.502 2.908 0.244 H51 WKT 15 WKT H1 H4 H 0 1 N N N N N N -7.892 -27.877 44.030 2.185 -0.257 -1.402 H1 WKT 16 WKT H2 H6 H 0 1 N N N N N N -9.953 -26.042 42.758 1.115 -0.990 1.362 H2 WKT 17 WKT HO2 H7 H 0 1 N Y N N N N -11.003 -27.550 44.199 1.585 -2.835 -0.083 HO2 WKT 18 WKT H3 H8 H 0 1 N N N N N N -8.538 -28.593 41.862 -0.336 -0.045 -1.155 H3 WKT 19 WKT HA3 H9 H 0 1 N N N N N N -10.702 -30.710 40.294 -3.608 -1.512 1.434 HA3 WKT 20 WKT HA2 H10 H 0 1 N N N N N N -9.137 -30.110 40.938 -4.526 -0.171 0.708 HA2 WKT 21 WKT HA1 H11 H 0 1 N N N N N N -10.662 -29.771 41.824 -4.288 -1.682 -0.203 HA1 WKT 22 WKT HO4 H12 H 0 1 N Y N N N N -6.195 -26.771 40.094 -1.003 3.102 0.356 HO4 WKT 23 WKT O1 O6 O 0 1 N Y N N N N -9.031 -26.609 45.211 3.418 -1.048 0.055 O1 WKT 24 WKT HO1 H5 H 0 1 N Y N N N N -8.345 -26.541 45.865 4.251 -0.697 -0.287 HO1 WKT 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WKT OA1 CA1 DOUB N N 1 WKT CA1 O3 SING N N 2 WKT CA1 CA2 SING N N 3 WKT O4 C4 SING N N 4 WKT O3 C3 SING N N 5 WKT C4 C3 SING N N 6 WKT C4 C5 SING N N 7 WKT C3 C2 SING N N 8 WKT C5 O5 SING N N 9 WKT C2 O2 SING N N 10 WKT C2 C1 SING N N 11 WKT O5 C1 SING N N 12 WKT C4 H4 SING N N 13 WKT C5 H52 SING N N 14 WKT C5 H51 SING N N 15 WKT C1 H1 SING N N 16 WKT C2 H2 SING N N 17 WKT O2 HO2 SING N N 18 WKT C3 H3 SING N N 19 WKT CA2 HA3 SING N N 20 WKT CA2 HA2 SING N N 21 WKT CA2 HA1 SING N N 22 WKT O4 HO4 SING N N 23 WKT C1 O1 SING N N 24 WKT O1 HO1 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WKT SMILES ACDLabs 12.01 "OC1C(OC(C)=O)C(O)COC1O" WKT InChI InChI 1.06 "InChI=1S/C7H12O6/c1-3(8)13-6-4(9)2-12-7(11)5(6)10/h4-7,9-11H,2H2,1H3/t4-,5-,6+,7-/m1/s1" WKT InChIKey InChI 1.06 NGQWFWSOTSWVQI-MVIOUDGNSA-N WKT SMILES_CANONICAL CACTVS 3.385 "CC(=O)O[C@H]1[C@H](O)CO[C@@H](O)[C@@H]1O" WKT SMILES CACTVS 3.385 "CC(=O)O[CH]1[CH](O)CO[CH](O)[CH]1O" WKT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)O[C@H]1[C@@H](CO[C@H]([C@@H]1O)O)O" WKT SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)OC1C(COC(C1O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WKT "SYSTEMATIC NAME" ACDLabs 12.01 3-O-acetyl-beta-D-xylopyranose WKT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{S},5~{R})-2,3,5-tris(oxidanyl)oxan-4-yl] ethanoate" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support WKT "CARBOHYDRATE ISOMER" D PDB ? WKT "CARBOHYDRATE RING" pyranose PDB ? WKT "CARBOHYDRATE ANOMER" beta PDB ? WKT "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 WKT 3-O-acetyl-beta-D-xylose PDB ? 2 WKT 3-O-acetyl-D-xylose PDB ? 3 WKT 3-O-acetyl-xylose PDB ? # _pdbx_chem_comp_related.comp_id WKT _pdbx_chem_comp_related.related_comp_id XYP _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 WKT C4 XYP C4 "Carbohydrate core" 2 WKT C5 XYP C5 "Carbohydrate core" 3 WKT C1 XYP C1 "Carbohydrate core" 4 WKT O5 XYP O5 "Carbohydrate core" 5 WKT C2 XYP C2 "Carbohydrate core" 6 WKT O2 XYP O2 "Carbohydrate core" 7 WKT C3 XYP C3 "Carbohydrate core" 8 WKT O3 XYP O3 "Carbohydrate core" 9 WKT O4 XYP O4 "Carbohydrate core" 10 WKT H4 XYP H4 "Carbohydrate core" 11 WKT H52 XYP H52 "Carbohydrate core" 12 WKT H51 XYP H51 "Carbohydrate core" 13 WKT H1 XYP H1 "Carbohydrate core" 14 WKT H2 XYP H2 "Carbohydrate core" 15 WKT HO2 XYP HO2 "Carbohydrate core" 16 WKT H3 XYP H3 "Carbohydrate core" 17 WKT HO4 XYP HO4 "Carbohydrate core" 18 WKT O1 XYP O1 "Carbohydrate core" 19 WKT HO1 XYP HO1 "Carbohydrate core" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WKT "Create component" 2023-10-06 RCSB WKT "Initial release" 2025-02-24 RCSB #