data_WLC # _chem_comp.id WLC _chem_comp.name "(1S)-1-[(2R,3S)-2-(4-hydroxy-3,5-dimethoxyphenyl)-3-(hydroxymethyl)-7-methoxy-2,3-dihydro-1-benzofuran-5-yl]propane-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-06 _chem_comp.pdbx_modified_date 2025-02-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 406.426 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WLC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WLC C1 C1 C 0 1 Y N N N N N 62.788 -2.865 10.513 -2.386 0.579 -0.398 C1 WLC 1 WLC C2 C2 C 0 1 Y N N N N N 63.547 -3.899 11.087 -3.677 1.014 -0.165 C2 WLC 2 WLC C3 C3 C 0 1 Y N N N N N 62.876 -4.972 11.675 -4.587 0.182 0.470 C3 WLC 3 WLC O3 O3 O 0 1 N N N N N N 63.488 -6.007 12.299 -5.858 0.610 0.698 O3 WLC 4 WLC C4 C4 C 0 1 Y N N N N N 61.479 -5.073 11.551 -4.199 -1.091 0.872 C4 WLC 5 WLC O4 O4 O 0 1 N N N N N N 60.770 -5.916 12.383 -5.089 -1.910 1.495 O4 WLC 6 WLC C5 C5 C 0 1 Y N N N N N 60.809 -4.203 10.678 -2.900 -1.524 0.636 C5 WLC 7 WLC O5 O5 O 0 1 N N N N N N 59.623 -4.615 10.177 -2.515 -2.768 1.028 O5 WLC 8 WLC C6 C6 C 0 1 Y N N N N N 61.470 -3.095 10.139 -1.998 -0.688 -0.004 C6 WLC 9 WLC C7 C7 C 0 1 N N R N N N 63.048 -1.554 11.211 -1.400 1.487 -1.087 C7 WLC 10 WLC C8 C8 C 0 1 N N S N N N 62.267 -0.233 10.986 -0.381 2.060 -0.074 C8 WLC 11 WLC C9 C9 C 0 1 N N N N N N 62.415 0.524 9.672 0.083 3.456 -0.495 C9 WLC 12 WLC O9 O9 O 0 1 N N N N N N 61.520 0.039 8.680 0.930 4.002 0.517 O9 WLC 13 WLC "C0'" "C0'" C 0 1 N N N N N N 61.324 0.019 15.591 2.239 -2.446 -3.053 "C0'" WLC 14 WLC C10 C10 C 0 1 N N N N N N 64.805 -6.338 11.909 -6.186 1.929 0.257 C10 WLC 15 WLC C11 C11 C 0 1 N N N N N N 59.685 -4.782 8.756 -1.165 -3.146 0.753 C11 WLC 16 WLC "C2'" "C2'" C 0 1 Y N N N N N 63.961 1.109 14.683 2.541 -0.939 -0.833 "C2'" WLC 17 WLC "C3'" "C3'" C 0 1 Y N N N N N 63.362 -0.116 14.470 1.456 -0.689 -1.654 "C3'" WLC 18 WLC "O3'" "O3'" O 0 1 N N N N N N 62.639 -0.563 15.531 1.273 -1.428 -2.781 "O3'" WLC 19 WLC "C6'" "C6'" C 0 1 Y N N N N N 63.280 1.798 12.430 1.839 0.809 0.642 "C6'" WLC 20 WLC "C8'" "C8'" C 0 1 N N N N N N 64.108 3.889 15.475 5.140 0.295 0.677 "C8'" WLC 21 WLC "C9'" "C9'" C 0 1 N N N N N N 62.647 3.650 15.867 6.309 0.118 1.648 "C9'" WLC 22 WLC "O9'" "O9'" O 0 1 N N N N N N 62.615 2.885 17.084 7.448 0.829 1.157 "O9'" WLC 23 WLC CP1 CP1 C 0 1 Y N N N N N 63.890 2.076 13.684 2.736 -0.192 0.313 CP1 WLC 24 WLC CP4 CP4 C 0 1 Y N N N N N 62.935 -0.454 13.170 0.549 0.322 -1.329 CP4 WLC 25 WLC OP4 OP4 O 0 1 N N N N N N 62.783 -1.728 12.656 -0.566 0.741 -1.990 OP4 WLC 26 WLC CP5 CP5 C 0 1 Y N N N N N 62.828 0.505 12.181 0.754 1.059 -0.171 CP5 WLC 27 WLC CP7 CP7 C 0 1 N N S N N N 64.423 3.448 14.038 3.921 -0.466 1.202 CP7 WLC 28 WLC OP7 OP7 O 0 1 N N N N N N 63.792 4.452 13.254 4.200 -1.868 1.206 OP7 WLC 29 WLC H2 H2 H 0 1 N N N N N N 64.626 -3.864 11.073 -3.978 2.003 -0.478 H2 WLC 30 WLC H6 H6 H 0 1 N N N N N N 60.968 -2.434 9.448 -0.988 -1.023 -0.187 H6 WLC 31 WLC H7 H7 H 0 1 N N N N N N 64.116 -1.321 11.090 -1.918 2.289 -1.613 H7 WLC 32 WLC H8 H8 H 0 1 N N N N N N 61.199 -0.429 11.160 -0.800 2.078 0.932 H8 WLC 33 WLC H101 H10 H 0 0 N N N N N N 65.465 -5.475 12.078 -7.227 2.145 0.499 H101 WLC 34 WLC H103 H10A H 0 0 N N N N N N 65.160 -7.193 12.503 -5.540 2.651 0.756 H103 WLC 35 WLC H102 H10B H 0 0 N N N N N N 64.815 -6.604 10.842 -6.043 1.998 -0.822 H102 WLC 36 WLC H111 H11 H 0 0 N N N N N N 60.449 -5.534 8.508 -0.990 -4.159 1.116 H111 WLC 37 WLC H113 H11A H 0 0 N N N N N N 58.706 -5.117 8.383 -0.989 -3.111 -0.322 H113 WLC 38 WLC H112 H11B H 0 0 N N N N N N 59.948 -3.823 8.285 -0.485 -2.458 1.255 H112 WLC 39 WLC "H2'" "H2'" H 0 1 N N N N N N 64.476 1.314 15.610 3.240 -1.723 -1.089 "H2'" WLC 40 WLC "H6'" "H6'" H 0 1 N N N N N N 63.170 2.573 11.686 1.988 1.395 1.537 "H6'" WLC 41 WLC "H7'" HOP7 H 0 1 N N N N N N 63.930 4.268 12.332 4.408 -2.229 0.333 "H7'" WLC 42 WLC "H8'" "H8'" H 0 1 N N N N N N 64.753 3.324 16.164 4.897 1.354 0.591 "H8'" WLC 43 WLC H91 H9 H 0 1 N N N N N N 62.207 1.589 9.849 0.634 3.388 -1.433 H91 WLC 44 WLC H92 H9A H 0 1 N N N N N N 63.447 0.408 9.308 -0.785 4.102 -0.630 H92 WLC 45 WLC HO9 HO9 H 0 1 N N N N N N 61.639 0.532 7.877 1.262 4.888 0.317 HO9 WLC 46 WLC HP1 "H9'" H 0 1 N N N N N N 62.135 3.095 15.067 6.031 0.508 2.627 HP1 WLC 47 WLC H1P1 "H0'" H 0 0 N N N N N N 60.787 -0.377 16.465 3.224 -1.992 -3.158 H1P1 WLC 48 WLC HP2 "H9'A" H 0 1 N N N N N N 62.143 4.615 16.023 6.552 -0.942 1.734 HP2 WLC 49 WLC H1P3 "H0'A" H 0 0 N N N N N N 60.770 -0.233 14.675 2.253 -3.162 -2.232 H1P3 WLC 50 WLC H1P2 "H0'B" H 0 0 N N N N N N 61.411 1.112 15.678 1.975 -2.959 -3.978 H1P2 WLC 51 WLC HP7 HP7 H 0 1 N N N N N N 65.513 3.466 13.887 3.697 -0.138 2.218 HP7 WLC 52 WLC HP9 "HO9'" H 0 1 N N N N N N 61.713 2.730 17.338 8.228 0.760 1.723 HP9 WLC 53 WLC HO4 HO4 H 0 1 N N N N N N 59.845 -5.867 12.170 -5.596 -2.471 0.892 HO4 WLC 54 WLC H8P "H8'A" H 0 1 N N N N N N 64.325 4.963 15.567 5.418 -0.095 -0.302 H8P WLC 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WLC C6 C1 DOUB Y N 1 WLC C1 C2 SING Y N 2 WLC C1 C7 SING N N 3 WLC C2 H2 SING N N 4 WLC C2 C3 DOUB Y N 5 WLC C4 C3 SING Y N 6 WLC C3 O3 SING N N 7 WLC C10 O3 SING N N 8 WLC C5 C4 DOUB Y N 9 WLC C4 O4 SING N N 10 WLC O4 HO4 SING N N 11 WLC C6 C5 SING Y N 12 WLC O5 C5 SING N N 13 WLC C11 O5 SING N N 14 WLC H6 C6 SING N N 15 WLC C8 C7 SING N N 16 WLC H7 C7 SING N N 17 WLC C7 OP4 SING N N 18 WLC C9 C8 SING N N 19 WLC C8 H8 SING N N 20 WLC C8 CP5 SING N N 21 WLC O9 C9 SING N N 22 WLC H91 C9 SING N N 23 WLC C9 H92 SING N N 24 WLC HO9 O9 SING N N 25 WLC H1P1 "C0'" SING N N 26 WLC H1P2 "C0'" SING N N 27 WLC "O3'" "C0'" SING N N 28 WLC "C0'" H1P3 SING N N 29 WLC H103 C10 SING N N 30 WLC C10 H102 SING N N 31 WLC C10 H101 SING N N 32 WLC H113 C11 SING N N 33 WLC H112 C11 SING N N 34 WLC H111 C11 SING N N 35 WLC CP1 "C2'" DOUB Y N 36 WLC "C3'" "C2'" SING Y N 37 WLC "C2'" "H2'" SING N N 38 WLC CP4 "C3'" DOUB Y N 39 WLC "C3'" "O3'" SING N N 40 WLC "H6'" "C6'" SING N N 41 WLC CP5 "C6'" DOUB Y N 42 WLC "C6'" CP1 SING Y N 43 WLC CP7 "C8'" SING N N 44 WLC "C8'" "C9'" SING N N 45 WLC "C8'" "H8'" SING N N 46 WLC "C8'" H8P SING N N 47 WLC HP2 "C9'" SING N N 48 WLC "C9'" HP1 SING N N 49 WLC "C9'" "O9'" SING N N 50 WLC "O9'" HP9 SING N N 51 WLC CP1 CP7 SING N N 52 WLC CP5 CP4 SING Y N 53 WLC OP4 CP4 SING N N 54 WLC OP7 CP7 SING N N 55 WLC HP7 CP7 SING N N 56 WLC OP7 "H7'" SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WLC SMILES ACDLabs 12.01 "OCCC(O)c1cc2c(OC(C2CO)c2cc(OC)c(O)c(OC)c2)c(c1)OC" WLC InChI InChI 1.06 "InChI=1S/C21H26O8/c1-26-16-8-12(9-17(27-2)19(16)25)20-14(10-23)13-6-11(15(24)4-5-22)7-18(28-3)21(13)29-20/h6-9,14-15,20,22-25H,4-5,10H2,1-3H3/t14-,15+,20+/m1/s1" WLC InChIKey InChI 1.06 RUDPHTXEXRMBNX-SIFCLUCFSA-N WLC SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1O)[C@@H]2Oc3c(OC)cc(cc3[C@H]2CO)[C@@H](O)CCO" WLC SMILES CACTVS 3.385 "COc1cc(cc(OC)c1O)[CH]2Oc3c(OC)cc(cc3[CH]2CO)[CH](O)CCO" WLC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1O)OC)[C@H]2[C@@H](c3cc(cc(c3O2)OC)[C@H](CCO)O)CO" WLC SMILES "OpenEye OEToolkits" 2.0.7 "COc1cc(cc(c1O)OC)C2C(c3cc(cc(c3O2)OC)C(CCO)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WLC "SYSTEMATIC NAME" ACDLabs 12.01 "(1S)-1-[(2R,3S)-2-(4-hydroxy-3,5-dimethoxyphenyl)-3-(hydroxymethyl)-7-methoxy-2,3-dihydro-1-benzofuran-5-yl]propane-1,3-diol" WLC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S})-1-[(2~{R},3~{S})-2-(3,5-dimethoxy-4-oxidanyl-phenyl)-3-(hydroxymethyl)-7-methoxy-2,3-dihydro-1-benzofuran-5-yl]propane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WLC "Create component" 2023-10-06 RCSB WLC "Other modification" 2023-12-06 RCSB WLC "Initial release" 2025-02-24 RCSB #