data_WM0 # _chem_comp.id WM0 _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[4-({2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}methyl)phenyl]methyl}piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H34 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-28 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.571 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WM0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ELE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WM0 N1 N1 N 0 1 N N N -36.426 -30.351 -69.085 5.636 0.356 0.065 N1 WM0 1 WM0 N3 N2 N 1 1 N N N -43.714 -31.521 -63.987 -3.474 2.361 1.077 N3 WM0 2 WM0 C4 C1 C 0 1 N N N -37.377 -29.670 -68.658 4.670 1.387 0.465 C4 WM0 3 WM0 C5 C2 C 0 1 Y N N -37.959 -30.118 -67.267 3.273 0.827 0.381 C5 WM0 4 WM0 C6 C3 C 0 1 Y N N -39.037 -30.993 -67.159 2.712 0.203 1.480 C6 WM0 5 WM0 C7 C4 C 0 1 Y N N -39.509 -31.439 -65.917 1.431 -0.311 1.403 C7 WM0 6 WM0 C8 C5 C 0 1 Y N N -38.918 -30.963 -64.756 0.711 -0.201 0.228 C8 WM0 7 WM0 C10 C6 C 0 1 Y N N -41.746 -30.264 -63.040 -3.019 -0.024 0.547 C10 WM0 8 WM0 C13 C7 C 0 1 Y N N -43.518 -28.142 -62.506 -5.729 -0.593 0.541 C13 WM0 9 WM0 C15 C8 C 0 1 N N N -45.467 -26.517 -63.655 -6.737 -1.566 -1.761 C15 WM0 10 WM0 C17 C9 C 0 1 N N R -44.238 -25.835 -61.717 -7.891 0.278 0.039 C17 WM0 11 WM0 C20 C10 C 0 1 Y N N -42.160 -28.034 -62.172 -4.808 -1.601 0.291 C20 WM0 12 WM0 C21 C11 C 0 1 Y N N -41.275 -29.094 -62.439 -3.457 -1.316 0.289 C21 WM0 13 WM0 C22 C12 C 0 1 Y N N -37.836 -30.113 -64.855 1.272 0.423 -0.870 C22 WM0 14 WM0 C24 C13 C 0 1 N N N -36.700 -31.763 -69.255 5.783 -0.662 1.113 C24 WM0 15 WM0 C26 C14 C 0 1 N N R -34.362 -32.292 -69.534 8.051 -1.219 0.230 C26 WM0 16 WM0 C1 C15 C 0 1 N N R -34.046 -30.894 -69.404 7.865 -0.128 -0.828 C1 WM0 17 WM0 O1 O1 O 0 1 N N N -32.744 -30.791 -68.795 9.133 0.451 -1.144 O1 WM0 18 WM0 C2 C16 C 0 1 N N R -35.090 -30.146 -68.547 6.932 0.954 -0.279 C2 WM0 19 WM0 N2 N3 N 0 1 N N N -40.871 -31.441 -63.328 -1.649 0.265 0.544 N2 WM0 20 WM0 O2 O2 O 0 1 N N N -34.889 -28.144 -69.826 6.205 1.445 -2.531 O2 WM0 21 WM0 C3 C17 C 0 1 N N N -34.737 -28.658 -68.533 6.728 2.037 -1.341 C3 WM0 22 WM0 O3 O3 O -1 1 N N N -44.239 -31.396 -65.319 -4.051 3.046 1.903 O3 WM0 23 WM0 N4 N4 N 0 1 N N N -44.506 -27.064 -62.284 -7.099 -0.882 0.544 N4 WM0 24 WM0 O4 O4 O 0 1 N N N -43.769 -32.727 -63.244 -2.513 2.809 0.477 O4 WM0 25 WM0 O5 O5 O 0 1 N N N -44.387 -25.071 -63.574 -7.281 -0.325 -2.219 O5 WM0 26 WM0 O6 O6 O 0 1 N N N -36.053 -33.789 -70.393 6.841 -2.773 1.633 O6 WM0 27 WM0 O7 O7 O 0 1 N N N -33.322 -32.982 -70.345 8.876 -2.260 -0.298 O7 WM0 28 WM0 C9 C18 C 0 1 N N N -39.412 -31.384 -63.351 -0.684 -0.763 0.145 C9 WM0 29 WM0 C11 C19 C 0 1 Y N N -43.110 -30.361 -63.350 -3.941 0.983 0.802 C11 WM0 30 WM0 C12 C20 C 0 1 Y N N -43.968 -29.302 -63.094 -5.292 0.700 0.799 C12 WM0 31 WM0 C14 C21 C 0 1 N N S -45.568 -26.886 -62.901 -7.421 -1.954 -0.439 C14 WM0 32 WM0 C16 C22 C 0 1 N N N -43.825 -25.010 -62.578 -7.220 0.740 -1.266 C16 WM0 33 WM0 C18 C23 C 0 1 N N N -45.325 -25.553 -61.280 -9.260 -0.343 -0.329 C18 WM0 34 WM0 C19 C24 C 0 1 N N N -46.245 -26.253 -62.144 -8.949 -1.821 -0.648 C19 WM0 35 WM0 C23 C25 C 0 1 Y N N -37.365 -29.692 -66.095 2.552 0.941 -0.792 C23 WM0 36 WM0 C25 C26 C 0 1 N N S -35.673 -32.414 -70.180 6.682 -1.793 0.606 C25 WM0 37 WM0 H2 H2 H 0 1 N N N -37.033 -28.630 -68.562 4.875 1.700 1.488 H2 WM0 38 WM0 H3 H3 H 0 1 N N N -38.190 -29.721 -69.398 4.757 2.245 -0.202 H3 WM0 39 WM0 H4 H4 H 0 1 N N N -39.524 -31.338 -68.059 3.274 0.117 2.398 H4 WM0 40 WM0 H5 H5 H 0 1 N N N -40.324 -32.146 -65.865 0.993 -0.799 2.262 H5 WM0 41 WM0 H7 H7 H 0 1 N N N -45.028 -27.248 -64.350 -6.916 -2.340 -2.506 H7 WM0 42 WM0 H8 H8 H 0 1 N N N -46.452 -26.202 -64.029 -5.665 -1.456 -1.598 H8 WM0 43 WM0 H9 H9 H 0 1 N N N -43.497 -25.966 -60.915 -7.970 1.081 0.772 H9 WM0 44 WM0 H10 H10 H 0 1 N N N -41.792 -27.131 -61.707 -5.148 -2.608 0.098 H10 WM0 45 WM0 H11 H11 H 0 1 N N N -40.231 -29.003 -62.179 -2.740 -2.098 0.086 H11 WM0 46 WM0 H12 H12 H 0 1 N N N -37.347 -29.769 -63.956 0.710 0.508 -1.788 H12 WM0 47 WM0 H13 H13 H 0 1 N N N -36.663 -32.257 -68.273 6.232 -0.211 1.998 H13 WM0 48 WM0 H14 H14 H 0 1 N N N -37.703 -31.885 -69.689 4.803 -1.065 1.368 H14 WM0 49 WM0 H15 H15 H 0 1 N N N -34.404 -32.756 -68.537 8.524 -0.793 1.114 H15 WM0 50 WM0 H16 H16 H 0 1 N N N -34.023 -30.428 -70.400 7.430 -0.563 -1.728 H16 WM0 51 WM0 H17 H17 H 0 1 N N N -32.511 -29.875 -68.698 9.777 -0.179 -1.495 H17 WM0 52 WM0 H18 H18 H 0 1 N N N -35.040 -30.531 -67.518 7.376 1.398 0.612 H18 WM0 53 WM0 H19 H19 H 0 1 N N N -41.105 -32.128 -62.640 -1.339 1.145 0.807 H19 WM0 54 WM0 H20 H20 H 0 1 N N N -34.672 -27.219 -69.827 6.051 2.075 -3.249 H20 WM0 55 WM0 H21 H21 H 0 1 N N N -35.408 -28.126 -67.843 6.026 2.783 -0.968 H21 WM0 56 WM0 H22 H22 H 0 1 N N N -33.695 -28.529 -68.204 7.683 2.514 -1.561 H22 WM0 57 WM0 H24 H24 H 0 1 N N N -35.422 -34.207 -70.967 6.011 -3.177 1.923 H24 WM0 58 WM0 H25 H25 H 0 1 N N N -33.541 -33.903 -70.424 9.035 -2.987 0.320 H25 WM0 59 WM0 H26 H26 H 0 1 N N N -39.005 -32.376 -63.104 -0.890 -1.075 -0.879 H26 WM0 60 WM0 H27 H27 H 0 1 N N N -39.065 -30.650 -62.608 -0.771 -1.621 0.811 H27 WM0 61 WM0 H28 H28 H 0 1 N N N -45.011 -29.389 -63.362 -6.009 1.484 0.994 H28 WM0 62 WM0 H29 H29 H 0 1 N N N -46.037 -27.879 -62.969 -7.122 -2.942 -0.091 H29 WM0 63 WM0 H30 H30 H 0 1 N N N -43.944 -23.994 -62.173 -7.744 1.611 -1.658 H30 WM0 64 WM0 H31 H31 H 0 1 N N N -42.759 -25.207 -62.767 -6.178 0.996 -1.070 H31 WM0 65 WM0 H32 H32 H 0 1 N N N -45.429 -25.896 -60.240 -9.948 -0.271 0.513 H32 WM0 66 WM0 H33 H33 H 0 1 N N N -45.495 -24.467 -61.327 -9.678 0.152 -1.206 H33 WM0 67 WM0 H34 H34 H 0 1 N N N -46.870 -25.537 -62.697 -9.212 -2.050 -1.680 H34 WM0 68 WM0 H35 H35 H 0 1 N N N -46.889 -26.923 -61.555 -9.484 -2.478 0.037 H35 WM0 69 WM0 H36 H36 H 0 1 N N N -36.520 -29.021 -66.142 2.988 1.432 -1.649 H36 WM0 70 WM0 H37 H37 H 0 1 N N N -35.665 -31.873 -71.138 6.227 -2.254 -0.271 H37 WM0 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WM0 N1 C4 SING N N 1 WM0 N1 C24 SING N N 2 WM0 N1 C2 SING N N 3 WM0 N3 O3 SING N N 4 WM0 N3 O4 DOUB N N 5 WM0 N3 C11 SING N N 6 WM0 C4 C5 SING N N 7 WM0 C5 C6 DOUB Y N 8 WM0 C5 C23 SING Y N 9 WM0 C6 C7 SING Y N 10 WM0 C7 C8 DOUB Y N 11 WM0 C8 C22 SING Y N 12 WM0 C8 C9 SING N N 13 WM0 C10 C21 DOUB Y N 14 WM0 C10 N2 SING N N 15 WM0 C10 C11 SING Y N 16 WM0 C13 C20 DOUB Y N 17 WM0 C13 N4 SING N N 18 WM0 C13 C12 SING Y N 19 WM0 C17 N4 SING N N 20 WM0 C17 C16 SING N N 21 WM0 C17 C18 SING N N 22 WM0 C20 C21 SING Y N 23 WM0 C22 C23 DOUB Y N 24 WM0 C24 C25 SING N N 25 WM0 C26 C1 SING N N 26 WM0 C26 O7 SING N N 27 WM0 C26 C25 SING N N 28 WM0 C1 O1 SING N N 29 WM0 C1 C2 SING N N 30 WM0 C2 C3 SING N N 31 WM0 N2 C9 SING N N 32 WM0 O2 C3 SING N N 33 WM0 N4 C14 SING N N 34 WM0 O5 C16 SING N N 35 WM0 O6 C25 SING N N 36 WM0 C11 C12 DOUB Y N 37 WM0 C14 C19 SING N N 38 WM0 C18 C19 SING N N 39 WM0 C14 C15 SING N N 40 WM0 C4 H2 SING N N 41 WM0 C4 H3 SING N N 42 WM0 C6 H4 SING N N 43 WM0 C7 H5 SING N N 44 WM0 C15 H7 SING N N 45 WM0 C15 H8 SING N N 46 WM0 C17 H9 SING N N 47 WM0 C20 H10 SING N N 48 WM0 C21 H11 SING N N 49 WM0 C22 H12 SING N N 50 WM0 C24 H13 SING N N 51 WM0 C24 H14 SING N N 52 WM0 C26 H15 SING N N 53 WM0 C1 H16 SING N N 54 WM0 O1 H17 SING N N 55 WM0 C2 H18 SING N N 56 WM0 N2 H19 SING N N 57 WM0 O2 H20 SING N N 58 WM0 C3 H21 SING N N 59 WM0 C3 H22 SING N N 60 WM0 O6 H24 SING N N 61 WM0 O7 H25 SING N N 62 WM0 C9 H26 SING N N 63 WM0 C9 H27 SING N N 64 WM0 C12 H28 SING N N 65 WM0 C14 H29 SING N N 66 WM0 C16 H30 SING N N 67 WM0 C16 H31 SING N N 68 WM0 C18 H32 SING N N 69 WM0 C18 H33 SING N N 70 WM0 C19 H34 SING N N 71 WM0 C19 H35 SING N N 72 WM0 C23 H36 SING N N 73 WM0 C25 H37 SING N N 74 WM0 C15 O5 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WM0 SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1Cc1ccc(cc1)CNc1ccc(cc1[N+]([O-])=O)N1C2CCC1COC2" WM0 InChI InChI 1.06 "InChI=1S/C26H34N4O7/c31-13-23-25(33)26(34)24(32)12-28(23)11-17-3-1-16(2-4-17)10-27-21-8-7-18(9-22(21)30(35)36)29-19-5-6-20(29)15-37-14-19/h1-4,7-9,19-20,23-27,31-34H,5-6,10-15H2/t19-,20+,23-,24+,25-,26-/m1/s1" WM0 InChIKey InChI 1.06 KLMRKLAEGBJCCT-BRHPATDUSA-N WM0 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1Cc2ccc(CNc3ccc(cc3[N+]([O-])=O)N4[C@@H]5CC[C@H]4COC5)cc2" WM0 SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1Cc2ccc(CNc3ccc(cc3[N+]([O-])=O)N4[CH]5CC[CH]4COC5)cc2" WM0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNc2ccc(cc2[N+](=O)[O-])N3[C@@H]4CC[C@H]3COC4)CN5C[C@@H]([C@H]([C@@H]([C@H]5CO)O)O)O" WM0 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CNc2ccc(cc2[N+](=O)[O-])N3C4CCC3COC4)CN5CC(C(C(C5CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WM0 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[4-({2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}methyl)phenyl]methyl}piperidine-3,4,5-triol" WM0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[4-[[[2-nitro-4-[(1~{R},5~{S})-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]phenyl]amino]methyl]phenyl]methyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WM0 "Create component" 2022-09-28 RCSB WM0 "Initial release" 2023-02-22 RCSB #