data_WM6 # _chem_comp.id WM6 _chem_comp.name "(4~{R},5~{S},6~{S})-4,5,6,15,17-pentakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.325 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WM6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QRA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WM6 C15 C1 C 0 1 N N S N N N -10.922 14.244 42.742 -2.685 0.898 -0.500 C15 WM6 1 WM6 C1 C2 C 0 1 N N R N N N -13.267 15.202 42.281 -1.225 2.697 0.459 C1 WM6 2 WM6 C2 C3 C 0 1 N N N N N N -14.712 15.022 42.683 0.039 1.931 0.846 C2 WM6 3 WM6 C3 C4 C 0 1 Y N N N N N -16.383 13.349 42.405 1.881 0.842 -0.190 C3 WM6 4 WM6 C8 C5 C 0 1 Y N N N N N -16.875 12.260 41.678 2.028 -0.546 -0.019 C8 WM6 5 WM6 C4 C6 C 0 1 Y N N N N N -17.197 14.034 43.289 3.001 1.654 -0.234 C4 WM6 6 WM6 C5 C7 C 0 1 Y N N N N N -18.513 13.638 43.471 4.270 1.099 -0.130 C5 WM6 7 WM6 C6 C8 C 0 1 Y N N N N N -19.036 12.565 42.768 4.426 -0.273 0.011 C6 WM6 8 WM6 C7 C9 C 0 1 Y N N N N N -18.222 11.891 41.875 3.317 -1.099 0.060 C7 WM6 9 WM6 C9 C10 C 0 1 N N N N N N -16.073 11.457 40.707 0.839 -1.399 0.093 C9 WM6 10 WM6 C10 C11 C 0 1 N N N N N N -13.993 11.027 39.700 -0.258 -3.528 0.170 C10 WM6 11 WM6 C11 C12 C 0 1 N N N N N N -12.550 11.474 39.801 -1.369 -3.047 -0.765 C11 WM6 12 WM6 C12 C13 C 0 1 N N N N N N -11.891 11.267 41.160 -2.549 -2.536 0.067 C12 WM6 13 WM6 C13 C14 C 0 1 N N N N N N -10.586 12.002 41.413 -3.405 -1.595 -0.781 C13 WM6 14 WM6 C14 C15 C 0 1 N N N N N N -10.744 13.497 41.424 -3.546 -0.267 -0.080 C14 WM6 15 WM6 C16 C16 C 0 1 N N S N N N -12.373 14.358 43.201 -2.472 1.843 0.681 C16 WM6 16 WM6 O1 O1 O 0 1 N N N N N N -12.917 16.586 42.368 -1.142 3.085 -0.914 O1 WM6 17 WM6 O2 O2 O 0 1 N N N N N N -15.096 13.729 42.209 0.646 1.385 -0.326 O2 WM6 18 WM6 O3 O3 O 0 1 N N N N N N -19.296 14.327 44.353 5.362 1.903 -0.168 O3 WM6 19 WM6 O4 O4 O 0 1 N N N N N N -18.727 10.832 41.206 3.487 -2.439 0.190 O4 WM6 20 WM6 O5 O5 O 0 1 N N N N N N -16.531 10.552 40.061 -0.250 -0.889 0.275 O5 WM6 21 WM6 O6 O6 O 0 1 N N N N N N -14.780 11.775 40.664 0.939 -2.736 -0.027 O6 WM6 22 WM6 O7 O7 O 0 1 N N N N N N -10.725 14.134 40.391 -4.355 -0.139 0.805 O7 WM6 23 WM6 O8 O8 O 0 1 N N N N N N -10.426 15.560 42.622 -3.344 1.600 -1.559 O8 WM6 24 WM6 O9 O9 O 0 1 N N N N N N -12.413 14.933 44.512 -2.347 1.096 1.891 O9 WM6 25 WM6 H15 H1 H 0 1 N N N N N N -10.359 13.706 43.519 -1.725 0.529 -0.856 H15 WM6 26 WM6 H2 H2 H 0 1 N N N N N N -13.139 14.847 41.248 -1.296 3.600 1.074 H2 WM6 27 WM6 H3 H3 H 0 1 N N N N N N -14.813 15.073 43.777 0.743 2.619 1.323 H3 WM6 28 WM6 H4 H4 H 0 1 N N N N N N -15.337 15.800 42.220 -0.194 1.128 1.541 H4 WM6 29 WM6 H5 H5 H 0 1 N N N N N N -16.807 14.878 43.838 2.887 2.721 -0.347 H5 WM6 30 WM6 H7 H6 H 0 1 N N N N N N -20.062 12.260 42.914 5.416 -0.698 0.084 H7 WM6 31 WM6 H9 H7 H 0 1 N N N N N N -14.064 9.951 39.919 -0.589 -3.440 1.204 H9 WM6 32 WM6 H10 H8 H 0 1 N N N N N N -14.370 11.220 38.685 -0.038 -4.576 -0.045 H10 WM6 33 WM6 H12 H9 H 0 1 N N N N N N -11.969 10.914 39.054 -0.996 -2.247 -1.402 H12 WM6 34 WM6 H11 H10 H 0 1 N N N N N N -12.511 12.548 39.566 -1.704 -3.878 -1.389 H11 WM6 35 WM6 H13 H11 H 0 1 N N N N N N -12.608 11.590 41.929 -3.154 -3.383 0.394 H13 WM6 36 WM6 H121 H12 H 0 0 N N N N N N -11.693 10.191 41.272 -2.175 -2.003 0.941 H121 WM6 37 WM6 H14 H13 H 0 1 N N N N N N -10.189 11.685 42.389 -2.932 -1.445 -1.751 H14 WM6 38 WM6 H131 H14 H 0 0 N N N N N N -9.872 11.731 40.621 -4.394 -2.034 -0.922 H131 WM6 39 WM6 H17 H15 H 0 1 N N N N N N -12.795 13.343 43.240 -3.342 2.504 0.767 H17 WM6 40 WM6 H1 H16 H 0 1 N N N N N N -12.008 16.700 42.115 -0.388 3.656 -1.116 H1 WM6 41 WM6 H6 H17 H 0 1 N N N N N N -20.165 13.944 44.372 5.645 2.223 0.699 H6 WM6 42 WM6 H8 H18 H 0 1 N N N N N N -18.061 10.473 40.631 3.513 -2.745 1.107 H8 WM6 43 WM6 H16 H19 H 0 1 N N N N N N -10.262 15.755 41.707 -3.512 1.061 -2.344 H16 WM6 44 WM6 H18 H20 H 0 1 N N N N N N -11.865 14.424 45.098 -3.121 0.555 2.102 H18 WM6 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WM6 O1 C1 SING N N 1 WM6 C1 C2 SING N N 2 WM6 C1 C16 SING N N 3 WM6 C2 O2 SING N N 4 WM6 O2 C3 SING N N 5 WM6 C3 C4 SING Y N 6 WM6 C3 C8 DOUB Y N 7 WM6 C4 C5 DOUB Y N 8 WM6 C5 O3 SING N N 9 WM6 C5 C6 SING Y N 10 WM6 C6 C7 DOUB Y N 11 WM6 C7 O4 SING N N 12 WM6 C7 C8 SING Y N 13 WM6 C8 C9 SING N N 14 WM6 C9 O5 DOUB N N 15 WM6 C9 O6 SING N N 16 WM6 O6 C10 SING N N 17 WM6 C10 C11 SING N N 18 WM6 C11 C12 SING N N 19 WM6 C12 C13 SING N N 20 WM6 C13 C14 SING N N 21 WM6 C14 O7 DOUB N N 22 WM6 C14 C15 SING N N 23 WM6 C15 O8 SING N N 24 WM6 C15 C16 SING N N 25 WM6 C16 O9 SING N N 26 WM6 C15 H15 SING N N 27 WM6 C1 H2 SING N N 28 WM6 C2 H3 SING N N 29 WM6 C2 H4 SING N N 30 WM6 C4 H5 SING N N 31 WM6 C6 H7 SING N N 32 WM6 C10 H9 SING N N 33 WM6 C10 H10 SING N N 34 WM6 C11 H12 SING N N 35 WM6 C11 H11 SING N N 36 WM6 C12 H13 SING N N 37 WM6 C12 H121 SING N N 38 WM6 C13 H14 SING N N 39 WM6 C13 H131 SING N N 40 WM6 C16 H17 SING N N 41 WM6 O1 H1 SING N N 42 WM6 O3 H6 SING N N 43 WM6 O4 H8 SING N N 44 WM6 O8 H16 SING N N 45 WM6 O9 H18 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WM6 InChI InChI 1.06 "InChI=1S/C16H20O9/c17-8-5-10(19)13-12(6-8)25-7-11(20)15(22)14(21)9(18)3-1-2-4-24-16(13)23/h5-6,11,14-15,17,19-22H,1-4,7H2/t11-,14+,15+/m1/s1" WM6 InChIKey InChI 1.06 JTDNYLVWHABXBF-UGFHNGPFSA-N WM6 SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1COc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[C@@H](O)[C@H]1O" WM6 SMILES CACTVS 3.385 "O[CH]1COc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[CH](O)[CH]1O" WM6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)[C@H]([C@H]([C@@H](CO2)O)O)O)O" WM6 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)C(C(C(CO2)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id WM6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R},5~{S},6~{S})-4,5,6,15,17-pentakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WM6 "Create component" 2023-10-09 PDBE WM6 "Modify PCM" 2024-09-27 PDBE WM6 "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WM6 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C12 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #