data_WM7 # _chem_comp.id WM7 _chem_comp.name "(3S)-N-benzylpyrrolidin-3-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-30 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WM7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RX2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WM7 C10 C1 C 0 1 Y N N -35.077 21.865 -3.754 -3.475 1.253 -0.560 C10 WM7 1 WM7 C13 C2 C 0 1 Y N N -34.456 22.859 -1.254 -2.442 -1.126 0.398 C13 WM7 2 WM7 C01 C3 C 0 1 N N N -36.498 21.676 -0.197 -0.288 -0.013 1.018 C01 WM7 3 WM7 C03 C4 C 0 1 N N S -38.795 21.514 0.667 2.046 -0.357 0.470 C03 WM7 4 WM7 C04 C5 C 0 1 N N N -38.730 22.402 1.904 2.933 -1.240 -0.431 C04 WM7 5 WM7 C05 C6 C 0 1 N N N -39.811 23.530 1.637 4.039 -0.298 -0.953 C05 WM7 6 WM7 C07 C7 C 0 1 N N N -40.130 21.563 0.299 2.690 1.045 0.417 C07 WM7 7 WM7 C08 C8 C 0 1 Y N N -35.562 22.046 -1.416 -1.681 0.027 0.445 C08 WM7 8 WM7 C09 C9 C 0 1 Y N N -35.860 21.551 -2.680 -2.197 1.217 -0.034 C09 WM7 9 WM7 C11 C10 C 0 1 Y N N -33.983 22.677 -3.598 -4.237 0.100 -0.607 C11 WM7 10 WM7 C12 C11 C 0 1 Y N N -33.675 23.173 -2.321 -3.720 -1.089 -0.128 C12 WM7 11 WM7 N02 N1 N 0 1 N N N -37.908 22.025 -0.425 0.674 -0.310 -0.052 N02 WM7 12 WM7 N06 N2 N 0 1 N N N -40.736 22.946 0.869 4.109 0.791 0.055 N06 WM7 13 WM7 H1 H1 H 0 1 N N N -35.320 21.472 -4.730 -3.881 2.183 -0.930 H1 WM7 14 WM7 H2 H2 H 0 1 N N N -34.212 23.246 -0.276 -2.038 -2.055 0.772 H2 WM7 15 WM7 H3 H3 H 0 1 N N N -36.430 20.593 -0.020 -0.050 0.954 1.462 H3 WM7 16 WM7 H4 H4 H 0 1 N N N -36.143 22.216 0.693 -0.231 -0.787 1.783 H4 WM7 17 WM7 H5 H5 H 0 1 N N N -38.494 20.492 0.939 2.048 -0.736 1.492 H5 WM7 18 WM7 H6 H6 H 0 1 N N N -38.981 21.828 2.808 3.370 -2.053 0.149 H6 WM7 19 WM7 H7 H7 H 0 1 N N N -37.728 22.842 2.015 2.350 -1.639 -1.261 H7 WM7 20 WM7 H8 H8 H 0 1 N N N -39.357 24.385 1.114 4.991 -0.825 -1.010 H8 WM7 21 WM7 H9 H9 H 0 1 N N N -40.254 23.873 2.584 3.767 0.102 -1.930 H9 WM7 22 WM7 H10 H10 H 0 1 N N N -40.219 21.537 -0.797 2.207 1.657 -0.344 H10 WM7 23 WM7 H11 H11 H 0 1 N N N -40.671 20.709 0.732 2.628 1.530 1.392 H11 WM7 24 WM7 H12 H12 H 0 1 N N N -36.720 20.911 -2.814 -1.602 2.117 0.002 H12 WM7 25 WM7 H13 H13 H 0 1 N N N -33.366 22.932 -4.447 -5.235 0.129 -1.017 H13 WM7 26 WM7 H14 H14 H 0 1 N N N -32.812 23.808 -2.186 -4.315 -1.990 -0.164 H14 WM7 27 WM7 H15 H15 H 0 1 N N N -37.991 23.021 -0.469 0.437 -1.171 -0.523 H15 WM7 28 WM7 H17 H17 H 0 1 N N N -40.972 23.550 0.108 4.535 1.618 -0.336 H17 WM7 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WM7 C10 C11 DOUB Y N 1 WM7 C10 C09 SING Y N 2 WM7 C11 C12 SING Y N 3 WM7 C09 C08 DOUB Y N 4 WM7 C12 C13 DOUB Y N 5 WM7 C08 C13 SING Y N 6 WM7 C08 C01 SING N N 7 WM7 N02 C01 SING N N 8 WM7 N02 C03 SING N N 9 WM7 C07 C03 SING N N 10 WM7 C07 N06 SING N N 11 WM7 C03 C04 SING N N 12 WM7 N06 C05 SING N N 13 WM7 C05 C04 SING N N 14 WM7 C10 H1 SING N N 15 WM7 C13 H2 SING N N 16 WM7 C01 H3 SING N N 17 WM7 C01 H4 SING N N 18 WM7 C03 H5 SING N N 19 WM7 C04 H6 SING N N 20 WM7 C04 H7 SING N N 21 WM7 C05 H8 SING N N 22 WM7 C05 H9 SING N N 23 WM7 C07 H10 SING N N 24 WM7 C07 H11 SING N N 25 WM7 C09 H12 SING N N 26 WM7 C11 H13 SING N N 27 WM7 C12 H14 SING N N 28 WM7 N02 H15 SING N N 29 WM7 N06 H17 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WM7 SMILES ACDLabs 12.01 "c2cccc(CNC1CCNC1)c2" WM7 InChI InChI 1.03 "InChI=1S/C11H16N2/c1-2-4-10(5-3-1)8-13-11-6-7-12-9-11/h1-5,11-13H,6-9H2/t11-/m0/s1" WM7 InChIKey InChI 1.03 NFLXIAUKMQBTMN-NSHDSACASA-N WM7 SMILES_CANONICAL CACTVS 3.385 "C1C[C@@H](CN1)NCc2ccccc2" WM7 SMILES CACTVS 3.385 "C1C[CH](CN1)NCc2ccccc2" WM7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN[C@H]2CCNC2" WM7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC2CCNC2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WM7 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-N-benzylpyrrolidin-3-amine" WM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-~{N}-(phenylmethyl)pyrrolidin-3-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WM7 "Create component" 2020-10-30 RCSB WM7 "Initial release" 2020-11-11 RCSB ##