data_WMB # _chem_comp.id WMB _chem_comp.name "5-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}-3,6-dihydro-2H-pyran-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H21 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-15 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WMB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G0Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WMB C02 C1 C 0 1 Y N N 16.887 -4.825 -21.810 -0.680 -1.003 -0.259 C02 WMB 1 WMB C05 C2 C 0 1 Y N N 14.649 -4.820 -25.456 -0.958 3.276 0.023 C05 WMB 2 WMB C10 C3 C 0 1 N N N 13.221 -5.069 -25.828 -0.066 4.490 0.015 C10 WMB 3 WMB C11 C4 C 0 1 N N N 12.519 -6.143 -25.044 -0.292 5.525 -1.089 C11 WMB 4 WMB C13 C5 C 0 1 Y N N 19.324 -4.334 -21.959 -2.888 -2.232 -0.134 C13 WMB 5 WMB C15 C6 C 0 1 N N N 19.498 -3.903 -24.516 -4.375 -0.212 0.106 C15 WMB 6 WMB C16 C7 C 0 1 N N N 20.822 -3.212 -24.135 -5.482 -1.196 -0.278 C16 WMB 7 WMB C17 C8 C 0 1 N N N 21.541 -3.980 -23.052 -5.272 -2.510 0.481 C17 WMB 8 WMB C18 C9 C 0 1 N N N 20.819 -3.973 -21.795 -4.039 -3.218 -0.093 C18 WMB 9 WMB C19 C10 C 0 1 N N N 15.156 -5.468 -20.172 1.630 -1.469 -0.486 C19 WMB 10 WMB C20 C11 C 0 1 N N N 13.726 -5.645 -20.109 3.029 -1.009 -0.578 C20 WMB 11 WMB C22 C12 C 0 1 N N N 13.056 -5.984 -18.920 3.651 -0.614 0.535 C22 WMB 12 WMB C23 C13 C 0 1 N N N 11.618 -6.215 -18.912 5.074 -0.125 0.524 C23 WMB 13 WMB C24 C14 C 0 1 N N N 10.991 -6.246 -20.318 5.751 -0.547 -0.782 C24 WMB 14 WMB C26 C15 C 0 1 N N N 12.894 -5.426 -21.359 3.704 -1.009 -1.921 C26 WMB 15 WMB C27 C16 C 0 1 N N N 13.701 -6.085 -17.555 2.921 -0.657 1.815 C27 WMB 16 WMB S01 S1 S 0 1 Y N N 18.237 -4.722 -20.782 -1.197 -2.679 -0.309 S01 WMB 17 WMB C03 C17 C 0 1 Y N N 17.290 -4.602 -23.178 -1.767 -0.188 -0.117 C03 WMB 18 WMB N04 N1 N 0 1 N N N 15.571 -5.078 -21.441 0.634 -0.571 -0.346 N04 WMB 19 WMB N06 N2 N 0 1 Y N N 15.588 -4.594 -26.318 -2.254 3.277 0.135 N06 WMB 20 WMB O07 O1 O 0 1 Y N N 16.753 -4.476 -25.537 -2.686 2.144 0.103 O07 WMB 21 WMB N08 N3 N 0 1 Y N N 15.078 -4.878 -24.195 -0.560 2.000 -0.088 N08 WMB 22 WMB C09 C18 C 0 1 Y N N 16.366 -4.640 -24.303 -1.669 1.277 -0.037 C09 WMB 23 WMB C12 C19 C 0 1 N N N 12.165 -4.727 -24.827 -0.706 5.839 0.350 C12 WMB 24 WMB C14 C20 C 0 1 Y N N 18.736 -4.279 -23.300 -3.027 -0.902 -0.052 C14 WMB 25 WMB O21 O2 O 0 1 N N N 15.939 -5.639 -19.247 1.376 -2.656 -0.536 O21 WMB 26 WMB O25 O3 O 0 1 N N N 11.581 -6.209 -21.251 4.887 -0.206 -1.873 O25 WMB 27 WMB O28 O4 O 0 1 N N N 13.447 -5.150 -16.696 1.813 -1.152 1.866 O28 WMB 28 WMB O29 O5 O 0 1 N N N 14.222 -7.194 -17.185 3.483 -0.148 2.929 O29 WMB 29 WMB H31 H1 H 0 1 N N N 12.955 -4.972 -26.891 0.959 4.323 0.345 H31 WMB 30 WMB H33 H2 H 0 1 N N N 11.809 -6.816 -25.548 0.584 6.039 -1.484 H33 WMB 31 WMB H32 H3 H 0 1 N N N 13.062 -6.699 -24.266 -1.086 5.328 -1.809 H32 WMB 32 WMB H37 H4 H 0 1 N N N 19.718 -4.809 -25.099 -4.418 0.659 -0.548 H37 WMB 33 WMB H36 H5 H 0 1 N N N 18.893 -3.214 -25.123 -4.507 0.099 1.142 H36 WMB 34 WMB H38 H6 H 0 1 N N N 21.467 -3.155 -25.024 -6.452 -0.774 -0.016 H38 WMB 35 WMB H39 H7 H 0 1 N N N 20.606 -2.196 -23.773 -5.444 -1.386 -1.351 H39 WMB 36 WMB H40 H8 H 0 1 N N N 21.666 -5.022 -23.382 -5.120 -2.299 1.540 H40 WMB 37 WMB H41 H9 H 0 1 N N N 22.530 -3.525 -22.894 -6.148 -3.147 0.357 H41 WMB 38 WMB H42 H10 H 0 1 N N N 20.891 -2.968 -21.354 -4.246 -3.581 -1.100 H42 WMB 39 WMB H43 H11 H 0 1 N N N 21.285 -4.705 -21.118 -3.779 -4.057 0.553 H43 WMB 40 WMB H45 H12 H 0 1 N N N 11.424 -7.181 -18.423 5.085 0.962 0.604 H45 WMB 41 WMB H44 H13 H 0 1 N N N 11.140 -5.410 -18.336 5.613 -0.556 1.368 H44 WMB 42 WMB H47 H14 H 0 1 N N N 10.410 -7.179 -20.367 6.700 -0.021 -0.889 H47 WMB 43 WMB H46 H15 H 0 1 N N N 10.307 -5.385 -20.361 5.924 -1.623 -0.774 H46 WMB 44 WMB H49 H16 H 0 1 N N N 12.672 -4.354 -21.467 3.967 -2.031 -2.194 H49 WMB 45 WMB H48 H17 H 0 1 N N N 13.456 -5.775 -22.238 3.024 -0.599 -2.668 H48 WMB 46 WMB H30 H18 H 0 1 N N N 14.867 -4.971 -22.143 0.837 0.376 -0.306 H30 WMB 47 WMB H34 H19 H 0 1 N N N 12.443 -4.231 -23.885 -1.772 5.848 0.577 H34 WMB 48 WMB H35 H20 H 0 1 N N N 11.190 -4.348 -25.167 -0.101 6.560 0.902 H35 WMB 49 WMB H1 H21 H 0 1 N N N 14.365 -7.180 -16.246 2.966 -0.200 3.745 H1 WMB 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WMB S01 C02 SING Y N 1 WMB C02 C03 DOUB Y N 2 WMB C02 N04 SING N N 3 WMB C05 N06 DOUB Y N 4 WMB N06 O07 SING Y N 5 WMB C05 N08 SING Y N 6 WMB C03 C09 SING N N 7 WMB O07 C09 SING Y N 8 WMB N08 C09 DOUB Y N 9 WMB C05 C10 SING N N 10 WMB C10 C11 SING N N 11 WMB C10 C12 SING N N 12 WMB C11 C12 SING N N 13 WMB S01 C13 SING Y N 14 WMB C03 C14 SING Y N 15 WMB C13 C14 DOUB Y N 16 WMB C14 C15 SING N N 17 WMB C15 C16 SING N N 18 WMB C16 C17 SING N N 19 WMB C13 C18 SING N N 20 WMB C17 C18 SING N N 21 WMB N04 C19 SING N N 22 WMB C19 C20 SING N N 23 WMB C19 O21 DOUB N N 24 WMB C20 C22 DOUB N N 25 WMB C22 C23 SING N N 26 WMB C23 C24 SING N N 27 WMB C24 O25 SING N N 28 WMB C20 C26 SING N N 29 WMB O25 C26 SING N N 30 WMB C22 C27 SING N N 31 WMB C27 O28 DOUB N N 32 WMB C27 O29 SING N N 33 WMB C10 H31 SING N N 34 WMB C11 H33 SING N N 35 WMB C11 H32 SING N N 36 WMB C15 H37 SING N N 37 WMB C15 H36 SING N N 38 WMB C16 H38 SING N N 39 WMB C16 H39 SING N N 40 WMB C17 H40 SING N N 41 WMB C17 H41 SING N N 42 WMB C18 H42 SING N N 43 WMB C18 H43 SING N N 44 WMB C23 H45 SING N N 45 WMB C23 H44 SING N N 46 WMB C24 H47 SING N N 47 WMB C24 H46 SING N N 48 WMB C26 H49 SING N N 49 WMB C26 H48 SING N N 50 WMB N04 H30 SING N N 51 WMB C12 H34 SING N N 52 WMB C12 H35 SING N N 53 WMB O29 H1 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WMB SMILES ACDLabs 12.01 "O=C(O)C=1CCOCC=1C(=O)Nc1sc2CCCCc2c1c1nc(no1)C1CC1" WMB InChI InChI 1.06 "InChI=1S/C20H21N3O5S/c24-17(13-9-27-8-7-11(13)20(25)26)22-19-15(12-3-1-2-4-14(12)29-19)18-21-16(23-28-18)10-5-6-10/h10H,1-9H2,(H,22,24)(H,25,26)" WMB InChIKey InChI 1.06 LYHCQWUDTPXZGL-UHFFFAOYSA-N WMB SMILES_CANONICAL CACTVS 3.385 "OC(=O)C1=C(COCC1)C(=O)Nc2sc3CCCCc3c2c4onc(n4)C5CC5" WMB SMILES CACTVS 3.385 "OC(=O)C1=C(COCC1)C(=O)Nc2sc3CCCCc3c2c4onc(n4)C5CC5" WMB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCc2c(c(c(s2)NC(=O)C3=C(CCOC3)C(=O)O)c4nc(no4)C5CC5)C1" WMB SMILES "OpenEye OEToolkits" 2.0.7 "C1CCc2c(c(c(s2)NC(=O)C3=C(CCOC3)C(=O)O)c4nc(no4)C5CC5)C1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WMB "SYSTEMATIC NAME" ACDLabs 12.01 "5-{[(3M)-3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl}-3,6-dihydro-2H-pyran-4-carboxylic acid" WMB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[3-(3-cyclopropyl-1,2,4-oxadiazol-5-yl)-4,5,6,7-tetrahydro-1-benzothiophen-2-yl]carbamoyl]-3,6-dihydro-2~{H}-pyran-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WMB "Create component" 2023-05-15 RCSB WMB "Initial release" 2023-06-14 RCSB #