data_WMC # _chem_comp.id WMC _chem_comp.name "(5~{S},6~{S})-5,6,15,17-tetrakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.325 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WMC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QR5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WMC C4 C1 C 0 1 Y N N N N N -16.173 16.437 42.768 -1.847 -0.888 -0.274 C4 WMC 1 WMC C5 C2 C 0 1 Y N N N N N -17.007 17.077 43.654 -2.998 -1.649 -0.343 C5 WMC 2 WMC C6 C3 C 0 1 Y N N N N N -18.302 16.625 43.839 -4.242 -1.046 -0.210 C6 WMC 3 WMC C7 C4 C 0 1 Y N N N N N -18.807 15.558 43.123 -4.339 0.327 -0.024 C7 WMC 4 WMC C3 C5 C 0 1 N N N N N N -14.497 18.169 43.020 -0.150 -2.263 0.659 C3 WMC 5 WMC C2 C6 C 0 1 N N N N N N -13.036 18.282 42.667 1.167 -2.931 0.267 C2 WMC 6 WMC C1 C7 C 0 1 N N S N N N -12.195 17.389 43.583 2.358 -2.034 0.595 C1 WMC 7 WMC C10 C8 C 0 1 N N N N N N -15.856 14.525 41.068 -0.705 1.287 0.108 C10 WMC 8 WMC C11 C9 C 0 1 N N N N N N -13.709 14.106 40.121 0.504 3.334 0.347 C11 WMC 9 WMC C12 C10 C 0 1 N N N N N N -12.279 14.606 40.271 1.581 2.889 -0.643 C12 WMC 10 WMC C13 C11 C 0 1 N N N N N N -11.648 14.327 41.646 2.753 2.270 0.120 C13 WMC 11 WMC C14 C12 C 0 1 N N N N N N -10.388 15.068 41.924 3.526 1.327 -0.803 C14 WMC 12 WMC C15 C13 C 0 1 N N N N N N -10.523 16.563 41.848 3.617 -0.039 -0.172 C15 WMC 13 WMC C16 C14 C 0 1 N N S N N N -10.731 17.355 43.136 2.678 -1.135 -0.601 C16 WMC 14 WMC C8 C15 C 0 1 Y N N N N N -17.972 14.911 42.238 -3.196 1.104 0.046 C8 WMC 15 WMC C9 C16 C 0 1 Y N N N N N -16.643 15.337 42.032 -1.933 0.498 -0.052 C9 WMC 16 WMC O1 O1 O 0 1 N N N N N N -12.299 17.972 44.894 2.084 -1.234 1.743 O1 WMC 17 WMC O2 O2 O 0 1 N N N N N N -14.899 16.865 42.581 -0.634 -1.476 -0.432 O2 WMC 18 WMC O3 O3 O 0 1 N N N N N N -19.104 17.266 44.741 -5.368 -1.801 -0.267 O3 WMC 19 WMC O4 O4 O 0 1 N N N N N N -18.463 13.850 41.562 -3.308 2.446 0.213 O4 WMC 20 WMC O5 O5 O 0 1 N N N N N N -16.332 13.601 40.455 0.357 0.713 0.262 O5 WMC 21 WMC O6 O6 O 0 1 N N N N N N -14.556 14.836 41.060 -0.737 2.631 0.078 O6 WMC 22 WMC O7 O7 O 0 1 N N N N N N -10.478 17.139 40.783 4.452 -0.255 0.674 O7 WMC 23 WMC O8 O8 O 0 1 N N N N N N -10.299 18.697 43.020 3.298 -1.915 -1.627 O8 WMC 24 WMC H7 H1 H 0 1 N N N N N N -16.651 17.934 44.207 -2.930 -2.716 -0.500 H7 WMC 25 WMC H9 H2 H 0 1 N N N N N N -19.830 15.239 43.253 -5.309 0.790 0.072 H9 WMC 26 WMC H5 H3 H 0 1 N N N N N N -14.639 18.269 44.106 -0.889 -3.038 0.888 H5 WMC 27 WMC H6 H4 H 0 1 N N N N N N -15.079 18.945 42.501 -0.024 -1.635 1.536 H6 WMC 28 WMC H3 H5 H 0 1 N N N N N N -12.714 19.327 42.785 1.265 -3.878 0.803 H3 WMC 29 WMC H4 H6 H 0 1 N N N N N N -12.890 17.969 41.623 1.156 -3.139 -0.807 H4 WMC 30 WMC H2 H7 H 0 1 N N N N N N -12.604 16.368 43.576 3.229 -2.664 0.805 H2 WMC 31 WMC H11 H8 H 0 1 N N N N N N -13.751 13.029 40.343 0.832 3.116 1.364 H11 WMC 32 WMC H12 H9 H 0 1 N N N N N N -14.058 14.282 39.093 0.342 4.409 0.247 H12 WMC 33 WMC H14 H10 H 0 1 N N N N N N -11.661 14.117 39.504 1.165 2.155 -1.333 H14 WMC 34 WMC H13 H11 H 0 1 N N N N N N -12.276 15.693 40.106 1.934 3.753 -1.208 H13 WMC 35 WMC H15 H12 H 0 1 N N N N N N -12.381 14.600 42.419 3.417 3.062 0.467 H15 WMC 36 WMC H131 H13 H 0 0 N N N N N N -11.431 13.250 41.709 2.378 1.714 0.978 H131 WMC 37 WMC H16 H14 H 0 1 N N N N N N -10.048 14.803 42.936 3.014 1.252 -1.762 H16 WMC 38 WMC H141 H15 H 0 0 N N N N N N -9.633 14.752 41.189 4.533 1.720 -0.960 H141 WMC 39 WMC H17 H16 H 0 1 N N N N N N -10.153 16.859 43.929 1.758 -0.698 -0.986 H17 WMC 40 WMC H1 H17 H 0 1 N N N N N N -11.793 17.457 45.511 1.896 -1.744 2.543 H1 WMC 41 WMC H8 H18 H 0 1 N N N N N N -19.957 16.848 44.760 -5.659 -2.139 0.591 H8 WMC 42 WMC H10 H19 H 0 1 N N N N N N -17.791 13.501 40.988 -3.321 2.728 1.138 H10 WMC 43 WMC H18 H20 H 0 1 N N N N N N -10.114 18.893 42.109 3.530 -1.411 -2.419 H18 WMC 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WMC O1 C1 SING N N 1 WMC C1 C2 SING N N 2 WMC C1 C16 SING N N 3 WMC C2 C3 SING N N 4 WMC C3 O2 SING N N 5 WMC O2 C4 SING N N 6 WMC C4 C5 SING Y N 7 WMC C4 C9 DOUB Y N 8 WMC C5 C6 DOUB Y N 9 WMC C6 O3 SING N N 10 WMC C6 C7 SING Y N 11 WMC C7 C8 DOUB Y N 12 WMC C8 O4 SING N N 13 WMC C8 C9 SING Y N 14 WMC C9 C10 SING N N 15 WMC C10 O5 DOUB N N 16 WMC C10 O6 SING N N 17 WMC O6 C11 SING N N 18 WMC C11 C12 SING N N 19 WMC C12 C13 SING N N 20 WMC C13 C14 SING N N 21 WMC C14 C15 SING N N 22 WMC C15 O7 DOUB N N 23 WMC C15 C16 SING N N 24 WMC C16 O8 SING N N 25 WMC C5 H7 SING N N 26 WMC C7 H9 SING N N 27 WMC C3 H5 SING N N 28 WMC C3 H6 SING N N 29 WMC C2 H3 SING N N 30 WMC C2 H4 SING N N 31 WMC C1 H2 SING N N 32 WMC C11 H11 SING N N 33 WMC C11 H12 SING N N 34 WMC C12 H14 SING N N 35 WMC C12 H13 SING N N 36 WMC C13 H15 SING N N 37 WMC C13 H131 SING N N 38 WMC C14 H16 SING N N 39 WMC C14 H141 SING N N 40 WMC C16 H17 SING N N 41 WMC O1 H1 SING N N 42 WMC O3 H8 SING N N 43 WMC O4 H10 SING N N 44 WMC O8 H18 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WMC InChI InChI 1.06 "InChI=1S/C16H20O8/c17-9-7-12(20)14-13(8-9)23-6-4-11(19)15(21)10(18)3-1-2-5-24-16(14)22/h7-8,11,15,17,19-21H,1-6H2" WMC InChIKey InChI 1.06 ZJNGIMKXODSFLG-UHFFFAOYSA-N WMC SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CCOc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[C@H]1O" WMC SMILES CACTVS 3.385 "O[CH]1CCOc2cc(O)cc(O)c2C(=O)OCCCCC(=O)[CH]1O" WMC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)[C@H]([C@H](CCO2)O)O)O" WMC SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1O)C(=O)OCCCCC(=O)C(C(CCO2)O)O)O" # _pdbx_chem_comp_identifier.comp_id WMC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S},6~{S})-5,6,15,17-tetrakis(oxidanyl)-2,12-dioxabicyclo[12.4.0]octadeca-1(14),15,17-triene-7,13-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WMC "Create component" 2023-10-09 PDBE WMC "Modify PCM" 2024-09-27 PDBE WMC "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WMC _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C13 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #