data_WMK # _chem_comp.id WMK _chem_comp.name "(1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2,4,12-trihydroxy-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-en-8-ium (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 4,9-anhydro-tetrodotoxin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-29 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WMK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8GZ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WMK C10 C1 C 0 1 N N R 138.510 135.009 142.909 -0.870 0.269 -0.596 C10 WMK 1 WMK C17 C2 C 0 1 N N N 136.583 135.362 141.434 -3.203 0.608 0.089 C17 WMK 2 WMK C02 C3 C 0 1 N N S 137.625 133.209 141.741 -1.696 -0.780 1.326 C02 WMK 3 WMK C03 C4 C 0 1 N N R 137.766 133.682 143.190 -0.675 0.335 0.939 C03 WMK 4 WMK C04 C5 C 0 1 N N R 138.651 132.642 143.901 0.731 -0.146 1.297 C04 WMK 5 WMK C05 C6 C 0 1 N N S 139.327 133.227 145.088 1.771 0.682 0.534 C05 WMK 6 WMK C06 C7 C 0 1 N N N 139.429 132.576 146.436 3.178 0.236 0.938 C06 WMK 7 WMK C08 C8 C 0 1 N N S 140.115 134.470 144.781 1.571 0.461 -0.970 C08 WMK 8 WMK C09 C9 C 0 1 N N R 139.304 135.621 144.095 0.190 1.012 -1.355 C09 WMK 9 WMK C11 C10 C 0 1 N N S 139.528 134.480 141.887 -0.787 -1.265 -0.797 C11 WMK 10 WMK C12 C11 C 0 1 N N S 140.450 133.530 142.666 0.650 -1.714 -0.495 C12 WMK 11 WMK N16 N1 N 0 1 N N N 137.497 135.890 142.297 -2.240 0.680 -0.894 N16 WMK 12 WMK N18 N2 N 0 1 N N N 135.602 136.148 140.822 -4.380 1.301 -0.065 N18 WMK 13 WMK N19 N3 N 0 1 N N N 136.587 134.045 141.138 -3.013 -0.110 1.168 N19 WMK 14 WMK O01 O1 O 0 1 N N N 138.790 133.616 141.064 -1.619 -1.769 0.277 O01 WMK 15 WMK O07 O2 O 0 1 N N N 139.537 131.211 146.186 4.146 1.009 0.225 O07 WMK 16 WMK O13 O3 O 0 1 N N N 141.437 133.200 141.803 0.797 -3.098 -0.816 O13 WMK 17 WMK O14 O4 O 0 1 N N N 141.041 134.103 143.817 1.604 -0.942 -1.249 O14 WMK 18 WMK O15 O5 O 0 1 N N N 139.716 132.351 143.041 0.884 -1.517 0.906 O15 WMK 19 WMK O20 O6 O 0 1 N N N 138.425 136.217 144.958 0.124 2.402 -1.030 O20 WMK 20 WMK O21 O7 O 0 1 N N N 138.159 133.862 145.465 1.601 2.067 0.842 O21 WMK 21 WMK H1 H1 H 0 1 N N N 137.413 132.132 141.672 -1.535 -1.184 2.325 H1 WMK 22 WMK H2 H2 H 0 1 N N N 136.798 133.834 143.690 -0.921 1.309 1.362 H2 WMK 23 WMK H3 H3 H 0 1 N N N 138.064 131.752 144.170 0.893 -0.040 2.369 H3 WMK 24 WMK H4 H4 H 0 1 N N N 140.318 132.940 146.972 3.312 0.383 2.009 H4 WMK 25 WMK H5 H5 H 0 1 N N N 138.530 132.787 147.033 3.308 -0.820 0.697 H5 WMK 26 WMK H6 H6 H 0 1 N N N 140.596 134.853 145.693 2.351 0.975 -1.533 H6 WMK 27 WMK H7 H7 H 0 1 N N N 140.019 136.354 143.693 0.031 0.881 -2.425 H7 WMK 28 WMK H8 H8 H 0 1 N N N 140.073 135.281 141.365 -1.123 -1.577 -1.786 H8 WMK 29 WMK H9 H9 H 0 1 N N N 137.481 136.866 142.513 -2.471 1.001 -1.780 H9 WMK 30 WMK H10 H10 H 0 1 N N N 134.944 135.729 140.196 -4.529 1.834 -0.861 H10 WMK 31 WMK H11 H11 H 0 1 N N N 135.558 137.129 141.010 -5.063 1.255 0.623 H11 WMK 32 WMK H12 H12 H 0 1 N N N 139.605 130.742 147.009 5.062 0.779 0.432 H12 WMK 33 WMK H13 H13 H 0 1 N N N 142.046 132.608 142.229 1.683 -3.449 -0.649 H13 WMK 34 WMK H14 H14 H 0 1 N N N 138.903 136.594 145.687 0.782 2.945 -1.485 H14 WMK 35 WMK H15 H15 H 0 1 N N N 138.309 134.354 146.263 2.228 2.649 0.392 H15 WMK 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WMK N18 C17 SING N N 1 WMK O01 C02 SING N N 2 WMK O01 C11 SING N N 3 WMK N19 C17 DOUB N N 4 WMK N19 C02 SING N N 5 WMK C17 N16 SING N N 6 WMK C02 C03 SING N N 7 WMK O13 C12 SING N N 8 WMK C11 C12 SING N N 9 WMK C11 C10 SING N N 10 WMK N16 C10 SING N N 11 WMK C12 O15 SING N N 12 WMK C12 O14 SING N N 13 WMK C10 C03 SING N N 14 WMK C10 C09 SING N N 15 WMK O15 C04 SING N N 16 WMK C03 C04 SING N N 17 WMK O14 C08 SING N N 18 WMK C04 C05 SING N N 19 WMK C09 C08 SING N N 20 WMK C09 O20 SING N N 21 WMK C08 C05 SING N N 22 WMK C05 O21 SING N N 23 WMK C05 C06 SING N N 24 WMK O07 C06 SING N N 25 WMK C02 H1 SING N N 26 WMK C03 H2 SING N N 27 WMK C04 H3 SING N N 28 WMK C06 H4 SING N N 29 WMK C06 H5 SING N N 30 WMK C08 H6 SING N N 31 WMK C09 H7 SING N N 32 WMK C11 H8 SING N N 33 WMK N16 H9 SING N N 34 WMK N18 H10 SING N N 35 WMK N18 H11 SING N N 36 WMK O07 H12 SING N N 37 WMK O13 H13 SING N N 38 WMK O20 H14 SING N N 39 WMK O21 H15 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WMK SMILES ACDLabs 12.01 "NC=1NC23C(O)C4OC5(O)OC(C2C(OC35)N=1)C4(O)CO" WMK InChI InChI 1.06 "InChI=1S/C11H15N3O7/c12-8-13-6-2-4-9(17,1-15)5-3(16)10(2,14-8)7(19-6)11(18,20-4)21-5/h2-7,15-18H,1H2,(H3,12,13,14)/t2-,3+,4-,5+,6+,7+,9+,10-,11+/m1/s1" WMK InChIKey InChI 1.06 STNXQECXKDMLJK-LQRXLWILSA-N WMK SMILES_CANONICAL CACTVS 3.385 "NC1=N[C@H]2O[C@@H]3[C@@]4(O)O[C@H]5[C@H](O)[C@]3(N1)[C@@H]2[C@@H](O4)[C@@]5(O)CO" WMK SMILES CACTVS 3.385 "NC1=N[CH]2O[CH]3[C]4(O)O[CH]5[CH](O)[C]3(N1)[CH]2[CH](O4)[C]5(O)CO" WMK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@]1([C@H]2[C@@H]3[C@H]4N=C(N[C@@]35[C@H]([C@@H]1O[C@]([C@H]5O4)(O2)O)O)N)O)O" WMK SMILES "OpenEye OEToolkits" 2.0.7 "C(C1(C2C3C4N=C(NC35C(C1OC(C5O4)(O2)O)O)N)O)O" # _pdbx_chem_comp_identifier.comp_id WMK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1R,2S,3S,4R,5R,9S,11S,12S,14R)-7-amino-2-(hydroxymethyl)-10,13,15-trioxa-6,8-diazapentacyclo[7.4.1.1~3,12~.0~5,11~.0~5,14~]pentadec-7-ene-2,4,12-triol (non-preferred name)" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WMK _pdbx_chem_comp_synonyms.name 4,9-anhydro-tetrodotoxin _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WMK "Create component" 2022-09-29 RCSB WMK "Initial release" 2023-03-08 RCSB #