data_WMX # _chem_comp.id WMX _chem_comp.name "(4~{S},9~{S},10~{S})-17-(ethoxymethoxy)-4-methyl-9,10,19-tris(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.485 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WMX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QR9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WMX C1 C1 C 0 1 N N N N N N -24.521 14.105 43.191 7.518 0.310 2.496 C1 WMX 1 WMX C2 C2 C 0 1 N N N N N N -24.005 15.204 42.367 7.181 -0.621 1.330 C2 WMX 2 WMX C4 C3 C 0 1 Y N N N N N -19.339 14.639 42.760 3.824 -0.845 -0.458 C4 WMX 3 WMX C5 C4 C 0 1 Y N N N N N -19.592 13.316 42.429 3.739 0.519 -0.692 C5 WMX 4 WMX C6 C5 C 0 1 Y N N N N N -18.566 12.551 41.904 2.506 1.153 -0.640 C6 WMX 5 WMX O7 O1 O 0 1 N N N N N N -15.024 12.527 41.064 -0.154 2.326 -0.027 O7 WMX 6 WMX O8 O2 O 0 1 N N N N N N -16.639 11.046 40.654 -0.923 0.376 -0.742 O8 WMX 7 WMX C9 C6 C 0 1 N N N N N N -15.664 15.080 41.794 0.243 -1.767 0.280 C9 WMX 8 WMX C10 C7 C 0 1 N N N N N N -15.627 16.600 41.920 -0.469 -2.287 -0.966 C10 WMX 9 WMX C11 C8 C 0 1 N N N N N N -14.320 17.247 41.469 -1.829 -2.874 -0.585 C11 WMX 10 WMX C12 C9 C 0 1 N N N N N N -13.075 16.593 42.036 -2.603 -1.895 0.296 C12 WMX 11 WMX C13 C10 C 0 1 N N S N N N -12.984 16.485 43.577 -4.107 -2.070 0.079 C13 WMX 12 WMX C14 C11 C 0 1 N N S N N N -11.946 15.458 44.056 -4.882 -1.167 1.035 C14 WMX 13 WMX C15 C12 C 0 1 N N N N N N -12.505 14.086 43.704 -4.840 0.268 0.592 C15 WMX 14 WMX C16 C13 C 0 1 N N N N N N -11.630 13.109 42.949 -4.671 1.367 1.611 C16 WMX 15 WMX C17 C14 C 0 1 N N N N N N -12.273 11.992 42.146 -3.747 2.454 1.056 C17 WMX 16 WMX C18 C15 C 0 1 N N N N N N -12.697 12.313 40.712 -2.471 1.803 0.520 C18 WMX 17 WMX C19 C16 C 0 1 N N S N N N -14.048 11.775 40.261 -1.505 2.859 -0.012 C19 WMX 18 WMX C20 C17 C 0 1 N N N N N N -14.323 12.008 38.789 -1.910 3.267 -1.430 C20 WMX 19 WMX C21 C18 C 0 1 N N N N N N -16.294 12.107 41.109 0.027 1.046 -0.371 C21 WMX 20 WMX C22 C19 C 0 1 Y N N N N N -18.071 15.175 42.564 2.679 -1.575 -0.154 C22 WMX 21 WMX C3 C20 C 0 1 N N N N N N -21.728 14.871 42.984 6.161 -0.659 -0.839 C3 WMX 22 WMX C7 C21 C 0 1 Y N N N N N -17.268 13.063 41.705 1.352 0.408 -0.370 C7 WMX 23 WMX C8 C22 C 0 1 Y N N N N N -17.026 14.421 42.025 1.460 -0.962 -0.094 C8 WMX 24 WMX O1 O3 O 0 1 N N N N N N -22.825 15.757 42.937 6.522 0.122 0.302 O1 WMX 25 WMX O2 O4 O 0 1 N N N N N N -20.397 15.393 43.252 5.027 -1.468 -0.523 O2 WMX 26 WMX O3 O5 O 0 1 N N N N N N -18.872 11.272 41.606 2.427 2.489 -0.858 O3 WMX 27 WMX O4 O6 O 0 1 N N N N N N -12.722 17.783 44.136 -4.439 -1.766 -1.274 O4 WMX 28 WMX O5 O7 O 0 1 N N N N N N -10.674 15.638 43.481 -6.245 -1.604 1.097 O5 WMX 29 WMX O6 O8 O 0 1 N N N N N N -13.643 13.829 44.061 -4.956 0.559 -0.576 O6 WMX 30 WMX H2 H1 H 0 1 N N N N N N -25.432 13.696 42.729 8.174 1.108 2.146 H2 WMX 31 WMX H3 H2 H 0 1 N N N N N N -23.760 13.314 43.265 6.600 0.743 2.893 H3 WMX 32 WMX H1 H3 H 0 1 N N N N N N -24.758 14.481 44.197 8.021 -0.256 3.280 H1 WMX 33 WMX H5 H4 H 0 1 N N N N N N -23.774 14.822 41.362 8.099 -1.054 0.933 H5 WMX 34 WMX H4 H5 H 0 1 N N N N N N -24.772 15.990 42.294 6.525 -1.418 1.679 H4 WMX 35 WMX H8 H6 H 0 1 N N N N N N -20.573 12.890 42.579 4.629 1.087 -0.918 H8 WMX 36 WMX H10 H7 H 0 1 N N N N N N -14.960 14.664 42.529 -0.435 -1.147 0.865 H10 WMX 37 WMX H11 H8 H 0 1 N N N N N N -15.331 14.818 40.779 0.554 -2.617 0.895 H11 WMX 38 WMX H13 H9 H 0 1 N N N N N N -16.443 17.014 41.309 -0.606 -1.480 -1.684 H13 WMX 39 WMX H12 H10 H 0 1 N N N N N N -15.791 16.860 42.976 0.140 -3.070 -1.427 H12 WMX 40 WMX H15 H11 H 0 1 N N N N N N -14.269 17.193 40.372 -2.398 -3.081 -1.491 H15 WMX 41 WMX H14 H12 H 0 1 N N N N N N -14.330 18.301 41.784 -1.676 -3.807 -0.040 H14 WMX 42 WMX H17 H13 H 0 1 N N N N N N -13.019 15.573 41.627 -2.368 -2.092 1.346 H17 WMX 43 WMX H16 H14 H 0 1 N N N N N N -12.207 17.174 41.691 -2.321 -0.873 0.052 H16 WMX 44 WMX H18 H15 H 0 1 N N N N N N -13.967 16.145 43.935 -4.372 -3.114 0.281 H18 WMX 45 WMX H20 H16 H 0 1 N N N N N N -11.874 15.530 45.151 -4.445 -1.245 2.036 H20 WMX 46 WMX H161 H17 H 0 0 N N N N N N -11.024 13.700 42.246 -5.646 1.804 1.833 H161 WMX 47 WMX H22 H18 H 0 1 N N N N N N -10.971 12.632 43.690 -4.242 0.954 2.523 H22 WMX 48 WMX H171 H19 H 0 0 N N N N N N -11.553 11.162 42.100 -4.255 2.984 0.250 H171 WMX 49 WMX H23 H20 H 0 1 N N N N N N -13.172 11.668 42.692 -3.493 3.155 1.850 H23 WMX 50 WMX H24 H21 H 0 1 N N N N N N -12.723 13.408 40.610 -1.991 1.241 1.324 H24 WMX 51 WMX H25 H22 H 0 1 N N N N N N -11.932 11.900 40.038 -2.743 1.119 -0.286 H25 WMX 52 WMX H26 H23 H 0 1 N N N N N N -14.113 10.700 40.486 -1.537 3.739 0.636 H26 WMX 53 WMX H29 H24 H 0 1 N N N N N N -15.310 11.597 38.530 -2.919 3.678 -1.416 H29 WMX 54 WMX H28 H25 H 0 1 N N N N N N -14.309 13.088 38.580 -1.216 4.021 -1.804 H28 WMX 55 WMX H27 H26 H 0 1 N N N N N N -13.549 11.508 38.188 -1.882 2.394 -2.082 H27 WMX 56 WMX H30 H27 H 0 1 N N N N N N -17.889 16.204 42.836 2.754 -2.636 0.032 H30 WMX 57 WMX H6 H28 H 0 1 N N N N N N -21.946 14.133 43.770 5.915 0.004 -1.669 H6 WMX 58 WMX H7 H29 H 0 1 N N N N N N -21.683 14.365 42.008 6.997 -1.298 -1.121 H7 WMX 59 WMX H9 H30 H 0 1 N N N N N N -18.130 10.860 41.179 2.292 2.730 -1.785 H9 WMX 60 WMX H19 H31 H 0 1 N N N N N N -12.666 17.716 45.082 -5.380 -1.858 -1.478 H19 WMX 61 WMX H21 H32 H 0 1 N N N N N N -10.079 14.977 43.814 -6.801 -1.076 1.687 H21 WMX 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WMX C1 C2 SING N N 1 WMX C2 O1 SING N N 2 WMX O1 C3 SING N N 3 WMX C3 O2 SING N N 4 WMX O2 C4 SING N N 5 WMX C4 C5 DOUB Y N 6 WMX C4 C22 SING Y N 7 WMX C5 C6 SING Y N 8 WMX C6 O3 SING N N 9 WMX C6 C7 DOUB Y N 10 WMX C7 C8 SING Y N 11 WMX C7 C21 SING N N 12 WMX C8 C9 SING N N 13 WMX C8 C22 DOUB Y N 14 WMX C9 C10 SING N N 15 WMX C10 C11 SING N N 16 WMX C11 C12 SING N N 17 WMX C12 C13 SING N N 18 WMX C13 O4 SING N N 19 WMX C13 C14 SING N N 20 WMX C14 O5 SING N N 21 WMX C14 C15 SING N N 22 WMX C15 O6 DOUB N N 23 WMX C15 C16 SING N N 24 WMX C16 C17 SING N N 25 WMX C17 C18 SING N N 26 WMX C18 C19 SING N N 27 WMX C19 C20 SING N N 28 WMX C19 O7 SING N N 29 WMX O7 C21 SING N N 30 WMX C21 O8 DOUB N N 31 WMX C1 H2 SING N N 32 WMX C1 H3 SING N N 33 WMX C1 H1 SING N N 34 WMX C2 H5 SING N N 35 WMX C2 H4 SING N N 36 WMX C5 H8 SING N N 37 WMX C9 H10 SING N N 38 WMX C9 H11 SING N N 39 WMX C10 H13 SING N N 40 WMX C10 H12 SING N N 41 WMX C11 H15 SING N N 42 WMX C11 H14 SING N N 43 WMX C12 H17 SING N N 44 WMX C12 H16 SING N N 45 WMX C13 H18 SING N N 46 WMX C14 H20 SING N N 47 WMX C16 H161 SING N N 48 WMX C16 H22 SING N N 49 WMX C17 H171 SING N N 50 WMX C17 H23 SING N N 51 WMX C18 H24 SING N N 52 WMX C18 H25 SING N N 53 WMX C19 H26 SING N N 54 WMX C20 H29 SING N N 55 WMX C20 H28 SING N N 56 WMX C20 H27 SING N N 57 WMX C22 H30 SING N N 58 WMX C3 H6 SING N N 59 WMX C3 H7 SING N N 60 WMX O3 H9 SING N N 61 WMX O4 H19 SING N N 62 WMX O5 H21 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WMX InChI InChI 1.06 "InChI=1S/C22H32O8/c1-3-28-13-29-16-11-15-8-4-5-9-17(23)21(26)18(24)10-6-7-14(2)30-22(27)20(15)19(25)12-16/h11-12,14,17,21,23,25-26H,3-10,13H2,1-2H3/t14-,17?,21?/m0/s1" WMX InChIKey InChI 1.06 KDOYDBOXSWPABK-UAXOWTEWSA-N WMX SMILES_CANONICAL CACTVS 3.385 "CCOCOc1cc(O)c2C(=O)O[C@@H](C)CCCC(=O)[C@@H](O)[C@@H](O)CCCCc2c1" WMX SMILES CACTVS 3.385 "CCOCOc1cc(O)c2C(=O)O[CH](C)CCCC(=O)[CH](O)[CH](O)CCCCc2c1" WMX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOCOc1cc2c(c(c1)O)C(=O)O[C@H](CCCC(=O)[C@H]([C@H](CCCC2)O)O)C" WMX SMILES "OpenEye OEToolkits" 2.0.7 "CCOCOc1cc2c(c(c1)O)C(=O)OC(CCCC(=O)C(C(CCCC2)O)O)C" # _pdbx_chem_comp_identifier.comp_id WMX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S},9~{S},10~{S})-17-(ethoxymethoxy)-4-methyl-9,10,19-tris(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WMX "Create component" 2023-10-09 PDBE WMX "Modify PCM" 2024-09-27 PDBE WMX "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WMX _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #