data_WN2 # _chem_comp.id WN2 _chem_comp.name "(4~{S},9~{S},10~{S})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H26 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.406 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WN2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QR8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WN2 C1 C1 C 0 1 N N N N N N -14.330 11.790 39.189 -0.236 4.535 0.089 C1 WN2 1 WN2 C2 C2 C 0 1 N N S N N N -14.182 11.511 40.675 0.039 3.053 -0.186 C2 WN2 2 WN2 C3 C3 C 0 1 N N N N N N -12.819 11.941 41.244 1.200 2.583 0.692 C3 WN2 3 WN2 C4 C4 C 0 1 N N N N N N -12.512 11.514 42.692 2.499 2.619 -0.118 C4 WN2 4 WN2 C5 C5 C 0 1 N N N N N N -11.821 12.568 43.558 3.548 1.726 0.547 C5 WN2 5 WN2 C6 C6 C 0 1 N N N N N N -12.780 13.578 44.144 3.792 0.507 -0.303 C6 WN2 6 WN2 C7 C7 C 0 1 N N S N N N -12.309 14.989 44.489 4.107 -0.821 0.335 C7 WN2 7 WN2 C8 C8 C 0 1 N N S N N N -13.367 16.022 44.065 3.313 -1.928 -0.364 C8 WN2 8 WN2 C9 C9 C 0 1 N N N N N N -13.401 16.200 42.537 1.889 -1.965 0.193 C9 WN2 9 WN2 C10 C10 C 0 1 N N N N N N -14.620 16.929 42.022 1.036 -2.928 -0.635 C10 WN2 10 WN2 C11 C11 C 0 1 N N N N N N -15.940 16.302 42.451 -0.362 -2.341 -0.848 C11 WN2 11 WN2 O1 O1 O 0 1 N N N N N N -13.947 13.298 44.361 3.738 0.592 -1.508 O1 WN2 12 WN2 O2 O2 O 0 1 N N N N N N -11.033 15.243 43.950 3.766 -0.790 1.721 O2 WN2 13 WN2 O3 O3 O 0 1 N N N N N N -13.104 17.299 44.678 3.949 -3.186 -0.133 O3 WN2 14 WN2 C12 C12 C 0 1 N N N N N N -15.999 14.856 42.042 -0.946 -1.887 0.489 C12 WN2 15 WN2 C13 C13 C 0 1 Y N N N N N -17.329 14.154 42.289 -2.276 -1.214 0.273 C13 WN2 16 WN2 O4 O4 O 0 1 N N N N N N -20.708 14.962 43.556 -5.795 -2.112 0.269 O4 WN2 17 WN2 O5 O5 O 0 1 N N N N N N -18.994 10.901 41.927 -3.699 2.090 -0.419 O5 WN2 18 WN2 C14 C14 C 0 1 Y N N N N N -18.414 14.868 42.812 -3.421 -1.958 0.362 C14 WN2 19 WN2 C15 C15 C 0 1 Y N N N N N -19.649 14.259 43.027 -4.667 -1.364 0.182 C15 WN2 20 WN2 C16 C16 C 0 1 Y N N N N N -19.807 12.917 42.751 -4.757 -0.005 -0.081 C16 WN2 21 WN2 C17 C17 C 0 1 Y N N N N N -18.752 12.203 42.209 -3.606 0.760 -0.169 C17 WN2 22 WN2 C18 C18 C 0 1 Y N N N N N -17.496 12.784 41.969 -2.349 0.153 -0.006 C18 WN2 23 WN2 C19 C19 C 0 1 N N N N N N -16.468 11.860 41.404 -1.130 0.960 -0.165 C19 WN2 24 WN2 O6 O6 O 0 1 N N N N N N -16.769 10.773 40.982 -0.086 0.444 -0.507 O6 WN2 25 WN2 O7 O7 O 0 1 N N N N N N -15.192 12.273 41.422 -1.153 2.281 0.103 O7 WN2 26 WN2 H1 H1 H 0 1 N N N N N N -15.323 11.459 38.850 0.655 5.119 -0.141 H1 WN2 27 WN2 H3 H2 H 0 1 N N N N N N -14.221 12.869 39.006 -1.063 4.873 -0.535 H3 WN2 28 WN2 H2 H3 H 0 1 N N N N N N -13.553 11.244 38.634 -0.496 4.667 1.139 H2 WN2 29 WN2 H4 H4 H 0 1 N N N N N N -14.319 10.435 40.855 0.307 2.928 -1.237 H4 WN2 30 WN2 H6 H5 H 0 1 N N N N N N -12.038 11.515 40.597 1.295 3.249 1.551 H6 WN2 31 WN2 H5 H6 H 0 1 N N N N N N -12.771 13.039 41.202 1.018 1.569 1.042 H5 WN2 32 WN2 H7 H7 H 0 1 N N N N N N -13.464 11.249 43.176 2.306 2.272 -1.131 H7 WN2 33 WN2 H41 H8 H 0 1 N N N N N N -11.861 10.628 42.653 2.871 3.645 -0.154 H41 WN2 34 WN2 H8 H9 H 0 1 N N N N N N -11.303 12.058 44.383 4.481 2.284 0.646 H8 WN2 35 WN2 H51 H10 H 0 1 N N N N N N -11.086 13.102 42.938 3.199 1.431 1.535 H51 WN2 36 WN2 H9 H11 H 0 1 N N N N N N -12.237 15.042 45.585 5.174 -1.025 0.232 H9 WN2 37 WN2 H11 H12 H 0 1 N N N N N N -14.352 15.656 44.389 3.281 -1.730 -1.436 H11 WN2 38 WN2 H13 H13 H 0 1 N N N N N N -12.508 16.768 42.237 1.913 -2.304 1.229 H13 WN2 39 WN2 H14 H14 H 0 1 N N N N N N -13.375 15.203 42.074 1.461 -0.964 0.149 H14 WN2 40 WN2 H15 H15 H 0 1 N N N N N N -14.589 17.963 42.397 1.510 -3.096 -1.602 H15 WN2 41 WN2 H16 H16 H 0 1 N N N N N N -14.581 16.936 40.923 0.951 -3.878 -0.106 H16 WN2 42 WN2 H17 H17 H 0 1 N N N N N N -16.035 16.372 43.545 -0.302 -1.499 -1.534 H17 WN2 43 WN2 H18 H18 H 0 1 N N N N N N -16.770 16.846 41.976 -1.006 -3.109 -1.282 H18 WN2 44 WN2 H10 H19 H 0 1 N N N N N N -10.762 16.125 44.178 4.240 -0.116 2.227 H10 WN2 45 WN2 H12 H20 H 0 1 N N N N N N -13.766 17.924 44.406 4.857 -3.235 -0.461 H12 WN2 46 WN2 H20 H21 H 0 1 N N N N N N -15.782 14.800 40.965 -1.088 -2.759 1.132 H20 WN2 47 WN2 H19 H22 H 0 1 N N N N N N -15.222 14.314 42.601 -0.263 -1.195 0.979 H19 WN2 48 WN2 H22 H23 H 0 1 N N N N N N -21.463 14.390 43.631 -6.167 -2.161 1.160 H22 WN2 49 WN2 H24 H24 H 0 1 N N N N N N -18.232 10.521 41.505 -3.766 2.636 0.376 H24 WN2 50 WN2 H21 H25 H 0 1 N N N N N N -18.291 15.913 43.054 -3.358 -3.014 0.578 H21 WN2 51 WN2 H23 H26 H 0 1 N N N N N N -20.747 12.427 42.956 -5.724 0.456 -0.223 H23 WN2 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WN2 C1 C2 SING N N 1 WN2 C2 C3 SING N N 2 WN2 C2 O7 SING N N 3 WN2 C3 C4 SING N N 4 WN2 C4 C5 SING N N 5 WN2 C5 C6 SING N N 6 WN2 C6 O1 DOUB N N 7 WN2 C6 C7 SING N N 8 WN2 C7 O2 SING N N 9 WN2 C7 C8 SING N N 10 WN2 C8 O3 SING N N 11 WN2 C8 C9 SING N N 12 WN2 C9 C10 SING N N 13 WN2 C10 C11 SING N N 14 WN2 C11 C12 SING N N 15 WN2 C12 C13 SING N N 16 WN2 C13 C14 DOUB Y N 17 WN2 C13 C18 SING Y N 18 WN2 C14 C15 SING Y N 19 WN2 C15 O4 SING N N 20 WN2 C15 C16 DOUB Y N 21 WN2 C16 C17 SING Y N 22 WN2 C17 O5 SING N N 23 WN2 C17 C18 DOUB Y N 24 WN2 C18 C19 SING N N 25 WN2 C19 O6 DOUB N N 26 WN2 C19 O7 SING N N 27 WN2 C1 H1 SING N N 28 WN2 C1 H3 SING N N 29 WN2 C1 H2 SING N N 30 WN2 C2 H4 SING N N 31 WN2 C3 H6 SING N N 32 WN2 C3 H5 SING N N 33 WN2 C4 H7 SING N N 34 WN2 C4 H41 SING N N 35 WN2 C5 H8 SING N N 36 WN2 C5 H51 SING N N 37 WN2 C7 H9 SING N N 38 WN2 C8 H11 SING N N 39 WN2 C9 H13 SING N N 40 WN2 C9 H14 SING N N 41 WN2 C10 H15 SING N N 42 WN2 C10 H16 SING N N 43 WN2 C11 H17 SING N N 44 WN2 C11 H18 SING N N 45 WN2 O2 H10 SING N N 46 WN2 O3 H12 SING N N 47 WN2 C12 H20 SING N N 48 WN2 C12 H19 SING N N 49 WN2 O4 H22 SING N N 50 WN2 O5 H24 SING N N 51 WN2 C14 H21 SING N N 52 WN2 C16 H23 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WN2 InChI InChI 1.06 "InChI=1S/C19H26O7/c1-11-5-4-8-15(22)18(24)14(21)7-3-2-6-12-9-13(20)10-16(23)17(12)19(25)26-11/h9-11,14,18,20-21,23-24H,2-8H2,1H3/t11-,14?,18?/m0/s1" WN2 InChIKey InChI 1.06 VYVPBIRFUYSEOP-JCDGYTILSA-N WN2 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCCC(=O)[C@@H](O)[C@@H](O)CCCCc2cc(O)cc(O)c2C(=O)O1" WN2 SMILES CACTVS 3.385 "C[CH]1CCCC(=O)[CH](O)[CH](O)CCCCc2cc(O)cc(O)c2C(=O)O1" WN2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](CCCCc2cc(cc(c2C(=O)O1)O)O)O)O" WN2 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CCCCc2cc(cc(c2C(=O)O1)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id WN2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S},9~{S},10~{S})-4-methyl-9,10,17,19-tetrakis(oxidanyl)-3-oxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-2,8-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WN2 "Create component" 2023-10-09 PDBE WN2 "Modify PCM" 2024-09-27 PDBE WN2 "Initial release" 2025-04-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WN2 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #