data_WN8 # _chem_comp.id WN8 _chem_comp.name "(6~{S},7~{S},12~{S})-12-methyl-6,7,16,18-tetrakis(oxidanyl)-2,13-dioxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-8,14-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H24 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-04-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 368.378 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WN8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QR4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WN8 C4 C1 C 0 1 N N N N N N -10.778 12.696 41.687 3.711 1.677 0.057 C4 WN8 1 WN8 C5 C2 C 0 1 N N N N N N -10.865 14.208 41.794 3.371 0.238 0.362 C5 WN8 2 WN8 C6 C3 C 0 1 N N S N N N -10.902 14.899 43.133 3.893 -0.861 -0.524 C6 WN8 3 WN8 C7 C4 C 0 1 N N S N N N -12.261 14.752 43.809 3.225 -2.193 -0.183 C7 WN8 4 WN8 C8 C5 C 0 1 N N N N N N -13.406 14.894 42.816 1.772 -2.176 -0.655 C8 WN8 5 WN8 C9 C6 C 0 1 N N N N N N -14.087 16.254 42.868 0.821 -2.367 0.525 C9 WN8 6 WN8 C10 C7 C 0 1 N N N N N N -15.547 16.074 42.472 -0.569 -2.747 0.005 C10 WN8 7 WN8 C11 C8 C 0 1 Y N N N N N -17.008 14.117 42.544 -2.239 -1.116 -0.465 C11 WN8 8 WN8 C12 C9 C 0 1 Y N N N N N -17.913 14.803 43.343 -3.392 -1.871 -0.349 C12 WN8 9 WN8 C3 C10 C 0 1 N N N N N N -12.124 12.016 41.392 2.517 2.351 -0.620 C3 WN8 10 WN8 C2 C11 C 0 1 N N N N N N -12.773 12.426 40.078 1.366 2.486 0.380 C2 WN8 11 WN8 C1 C12 C 0 1 N N S N N N -14.214 11.927 39.979 0.163 3.125 -0.316 C1 WN8 12 WN8 C C13 C 0 1 N N N N N N -14.751 12.246 38.588 -0.011 4.562 0.185 C WN8 13 WN8 O O1 O 0 1 N N N N N N -10.885 14.884 40.778 2.680 -0.014 1.320 O WN8 14 WN8 C13 C14 C 0 1 Y N N N N N -19.169 14.275 43.596 -4.573 -1.282 0.084 C13 WN8 15 WN8 C14 C15 C 0 1 Y N N N N N -19.511 13.044 43.053 -4.607 0.071 0.393 C14 WN8 16 WN8 C15 C16 C 0 1 Y N N N N N -18.601 12.353 42.262 -3.474 0.850 0.244 C15 WN8 17 WN8 C16 C17 C 0 1 Y N N N N N -17.346 12.884 42.002 -2.282 0.267 -0.212 C16 WN8 18 WN8 C17 C18 C 0 1 N N N N N N -16.378 12.111 41.148 -1.081 1.082 -0.428 C17 WN8 19 WN8 O1 O2 O 0 1 N N N N N N -10.642 16.295 42.952 5.308 -0.983 -0.353 O1 WN8 20 WN8 O2 O3 O 0 1 N N N N N N -12.396 15.753 44.825 3.296 -2.433 1.221 O2 WN8 21 WN8 O3 O4 O 0 1 N N N N N N -15.778 14.674 42.322 -1.073 -1.704 -0.831 O3 WN8 22 WN8 O4 O5 O 0 1 N N N N N N -20.054 14.960 44.373 -5.697 -2.032 0.206 O4 WN8 23 WN8 O5 O6 O 0 1 N N N N N N -18.958 11.147 41.741 -3.530 2.173 0.538 O5 WN8 24 WN8 O6 O7 O 0 1 N N N N N N -16.744 11.075 40.616 -0.120 0.595 -0.996 O6 WN8 25 WN8 O7 O8 O 0 1 N N N N N N -15.000 12.573 40.987 -1.035 2.362 -0.020 O7 WN8 26 WN8 H41 H1 H 0 1 N N N N N N -10.078 12.446 40.876 3.942 2.196 0.987 H41 WN8 27 WN8 H9 H2 H 0 1 N N N N N N -10.392 12.303 42.639 4.576 1.715 -0.604 H9 WN8 28 WN8 H1 H3 H 0 1 N N N N N N -10.135 14.456 43.784 3.681 -0.613 -1.568 H1 WN8 29 WN8 H2 H4 H 0 1 N N N N N N -12.317 13.752 44.264 3.756 -2.998 -0.705 H2 WN8 30 WN8 H12 H5 H 0 1 N N N N N N -14.156 14.120 43.036 1.560 -1.222 -1.140 H12 WN8 31 WN8 H13 H6 H 0 1 N N N N N N -13.009 14.742 41.802 1.617 -2.980 -1.377 H13 WN8 32 WN8 H15 H7 H 0 1 N N N N N N -13.594 16.944 42.167 1.184 -3.167 1.170 H15 WN8 33 WN8 H14 H8 H 0 1 N N N N N N -14.026 16.662 43.888 0.752 -1.441 1.095 H14 WN8 34 WN8 H17 H9 H 0 1 N N N N N N -15.746 16.592 41.522 -0.496 -3.669 -0.571 H17 WN8 35 WN8 H16 H10 H 0 1 N N N N N N -16.202 16.481 43.256 -1.241 -2.898 0.849 H16 WN8 36 WN8 H18 H11 H 0 1 N N N N N N -17.636 15.755 43.771 -3.372 -2.923 -0.586 H18 WN8 37 WN8 H31 H12 H 0 1 N N N N N N -11.960 10.929 41.368 2.810 3.337 -0.978 H31 WN8 38 WN8 H8 H13 H 0 1 N N N N N N -12.818 12.264 42.208 2.192 1.740 -1.463 H8 WN8 39 WN8 H7 H14 H 0 1 N N N N N N -12.191 12.003 39.246 1.089 1.500 0.753 H7 WN8 40 WN8 H6 H15 H 0 1 N N N N N N -12.770 13.524 40.006 1.682 3.113 1.213 H6 WN8 41 WN8 H H16 H 0 1 N N N N N N -14.226 10.837 40.126 0.332 3.138 -1.393 H WN8 42 WN8 H4 H17 H 0 1 N N N N N N -14.133 11.740 37.831 0.887 5.137 -0.041 H4 WN8 43 WN8 H5 H18 H 0 1 N N N N N N -15.790 11.895 38.507 -0.868 5.018 -0.311 H5 WN8 44 WN8 H3 H19 H 0 1 N N N N N N -14.717 13.333 38.422 -0.176 4.554 1.262 H3 WN8 45 WN8 H20 H20 H 0 1 N N N N N N -20.486 12.622 43.246 -5.523 0.519 0.747 H20 WN8 46 WN8 H10 H21 H 0 1 N N N N N N -10.598 16.492 42.024 5.801 -0.181 -0.574 H10 WN8 47 WN8 H11 H22 H 0 1 N N N N N N -11.684 15.670 45.449 4.197 -2.477 1.567 H11 WN8 48 WN8 H19 H23 H 0 1 N N N N N N -19.660 15.776 44.659 -5.809 -2.435 1.077 H19 WN8 49 WN8 H21 H24 H 0 1 N N N N N N -18.251 10.813 41.202 -3.316 2.382 1.457 H21 WN8 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WN8 O6 C17 DOUB N N 1 WN8 C17 O7 SING N N 2 WN8 C17 C16 SING N N 3 WN8 O7 C1 SING N N 4 WN8 C1 C SING N N 5 WN8 C1 C2 SING N N 6 WN8 C16 C15 DOUB Y N 7 WN8 C16 C11 SING Y N 8 WN8 C15 O5 SING N N 9 WN8 C15 C14 SING Y N 10 WN8 C14 C13 DOUB Y N 11 WN8 C13 O4 SING N N 12 WN8 C13 C12 SING Y N 13 WN8 C12 C11 DOUB Y N 14 WN8 C11 O3 SING N N 15 WN8 O3 C10 SING N N 16 WN8 C10 C9 SING N N 17 WN8 C9 C8 SING N N 18 WN8 C8 C7 SING N N 19 WN8 C7 O2 SING N N 20 WN8 C7 C6 SING N N 21 WN8 C6 O1 SING N N 22 WN8 C6 C5 SING N N 23 WN8 C5 O DOUB N N 24 WN8 C5 C4 SING N N 25 WN8 C4 C3 SING N N 26 WN8 C3 C2 SING N N 27 WN8 C4 H41 SING N N 28 WN8 C4 H9 SING N N 29 WN8 C6 H1 SING N N 30 WN8 C7 H2 SING N N 31 WN8 C8 H12 SING N N 32 WN8 C8 H13 SING N N 33 WN8 C9 H15 SING N N 34 WN8 C9 H14 SING N N 35 WN8 C10 H17 SING N N 36 WN8 C10 H16 SING N N 37 WN8 C12 H18 SING N N 38 WN8 C3 H31 SING N N 39 WN8 C3 H8 SING N N 40 WN8 C2 H7 SING N N 41 WN8 C2 H6 SING N N 42 WN8 C1 H SING N N 43 WN8 C H4 SING N N 44 WN8 C H5 SING N N 45 WN8 C H3 SING N N 46 WN8 C14 H20 SING N N 47 WN8 O1 H10 SING N N 48 WN8 O2 H11 SING N N 49 WN8 O4 H19 SING N N 50 WN8 O5 H21 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WN8 InChI InChI 1.06 "InChI=1S/C18H24O8/c1-10-4-2-5-12(20)17(23)13(21)6-3-7-25-15-9-11(19)8-14(22)16(15)18(24)26-10/h8-10,13,17,19,21-23H,2-7H2,1H3/t10-,13?,17+/m0/s1" WN8 InChIKey InChI 1.06 OHMMQAZYIHWRGL-PFRTXPISSA-N WN8 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CCCC(=O)[C@@H](O)[C@@H](O)CCCOc2cc(O)cc(O)c2C(=O)O1" WN8 SMILES CACTVS 3.385 "C[CH]1CCCC(=O)[CH](O)[CH](O)CCCOc2cc(O)cc(O)c2C(=O)O1" WN8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](CCCOc2cc(cc(c2C(=O)O1)O)O)O)O" WN8 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CCCOc2cc(cc(c2C(=O)O1)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id WN8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S},7~{S},12~{S})-12-methyl-6,7,16,18-tetrakis(oxidanyl)-2,13-dioxabicyclo[13.4.0]nonadeca-1(19),15,17-triene-8,14-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WN8 "Create component" 2023-10-09 PDBE WN8 "Initial release" 2025-04-16 RCSB #