data_WN9 # _chem_comp.id WN9 _chem_comp.name "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S)-2-azanyl-3-methyl-butanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Valyl adenylate " _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-11 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WN9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WO2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WN9 N1 N N 0 1 N N N N N N -11.626 -6.464 4.722 7.470 -1.132 -0.264 N1 WN9 1 WN9 C1 CA C 0 1 N N S N N N -12.622 -7.307 5.355 6.067 -1.279 -0.674 C1 WN9 2 WN9 C2 C C 0 1 N N N N N N -12.511 -8.728 4.812 5.219 -0.275 0.064 C2 WN9 3 WN9 O1 O O 0 1 N N N N N N -13.002 -9.568 5.356 5.628 0.227 1.084 O1 WN9 4 WN9 C3 CB C 0 1 N N N N N N -13.983 -6.751 5.120 5.585 -2.693 -0.344 C3 WN9 5 WN9 C4 CG1 C 0 1 N N N N N N -14.008 -5.197 5.396 4.124 -2.847 -0.772 C4 WN9 6 WN9 C5 CG2 C 0 1 N N N N N N -14.513 -7.055 3.604 6.446 -3.713 -1.093 C5 WN9 7 WN9 C6 C1* C 0 1 N N R N N N -15.697 -12.705 0.983 -2.568 0.889 -0.560 C6 WN9 8 WN9 C7 C2 C 0 1 Y N N N N N -17.273 -16.629 -0.217 -6.708 -0.780 -1.026 C7 WN9 9 WN9 C8 C2* C 0 1 N N R N N N -15.957 -11.941 2.339 -2.858 2.124 0.331 C8 WN9 10 WN9 C9 C3* C 0 1 N N S N N N -15.971 -10.459 1.837 -1.639 3.031 0.035 C9 WN9 11 WN9 C10 C4 C 0 1 Y N N N N N -15.785 -15.161 0.787 -4.539 -0.673 -0.275 C10 WN9 12 WN9 C11 C4* C 0 1 N N R N N N -15.057 -10.410 0.926 -0.573 2.064 -0.514 C11 WN9 13 WN9 C12 C5 C 0 1 Y N N N N N -15.013 -16.220 1.198 -4.739 -1.867 0.438 C12 WN9 14 WN9 C13 C5* C 0 1 N N N N N N -13.717 -9.836 1.502 0.682 2.123 0.359 C13 WN9 15 WN9 C14 C6 C 0 1 Y N N N N N -15.449 -17.530 0.852 -6.001 -2.480 0.365 C14 WN9 16 WN9 C15 C8 C 0 1 Y N N N N N -14.102 -14.392 1.865 -2.695 -1.236 0.795 C15 WN9 17 WN9 N2 N1 N 0 1 Y N N N N N -16.563 -17.681 0.158 -6.944 -1.903 -0.373 N2 WN9 18 WN9 N3 N3 N 0 1 Y N N N N N -16.897 -15.386 0.088 -5.543 -0.170 -0.987 N3 WN9 19 WN9 N4 N6 N 0 1 N N N N N N -14.676 -18.719 1.256 -6.257 -3.658 1.046 N4 WN9 20 WN9 N5 N7 N 0 1 Y N N N N N -13.980 -15.719 1.862 -3.575 -2.155 1.069 N5 WN9 21 WN9 N6 N9 N 0 1 Y N N N N N -15.188 -14.059 1.219 -3.242 -0.299 -0.030 N6 WN9 22 WN9 O2 O2* O 0 1 N N N N N N -17.124 -12.273 2.859 -4.076 2.761 -0.061 O2 WN9 23 WN9 O3 O3* O 0 1 N N N N N N -17.298 -10.145 1.222 -1.976 4.017 -0.943 O3 WN9 24 WN9 O4 O4* O 0 1 N N N N N N -14.824 -11.980 0.365 -1.134 0.741 -0.474 O4 WN9 25 WN9 O5 O5* O 0 1 N N N N N N -13.041 -10.885 2.228 1.706 1.313 -0.222 O5 WN9 26 WN9 O6 OAU O 0 1 N N N N N N -10.542 -10.566 2.016 3.029 0.674 1.831 O6 WN9 27 WN9 O7 OAV O 0 1 N N N N N N -11.433 -11.537 4.099 3.933 2.557 0.413 O7 WN9 28 WN9 O8 OAW O 0 1 N N N N N N -11.758 -8.968 3.618 4.010 0.062 -0.412 O8 WN9 29 WN9 P1 PAT P 0 1 N N N N N N -11.670 -10.519 2.988 3.166 1.141 0.433 P1 WN9 30 WN9 H1 H1 H 0 1 N N N N N N -11.701 -5.533 5.079 7.831 -0.227 -0.529 H1 WN9 31 WN9 H2 H2 H 0 1 N N N N N N -10.713 -6.823 4.916 7.574 -1.286 0.728 H2 WN9 32 WN9 H4 H4 H 0 1 N N N N N N -12.435 -7.337 6.439 5.982 -1.107 -1.747 H4 WN9 33 WN9 H5 H5 H 0 1 N N N N N N -14.690 -7.229 5.814 5.670 -2.865 0.729 H5 WN9 34 WN9 H6 H6 H 0 1 N N N N N N -13.650 -5.000 6.417 3.781 -3.855 -0.537 H6 WN9 35 WN9 H7 H7 H 0 1 N N N N N N -13.355 -4.686 4.674 3.511 -2.121 -0.238 H7 WN9 36 WN9 H8 H8 H 0 1 N N N N N N -15.037 -4.822 5.289 4.040 -2.675 -1.845 H8 WN9 37 WN9 H9 H9 H 0 1 N N N N N N -15.518 -6.628 3.474 7.486 -3.603 -0.789 H9 WN9 38 WN9 H10 H10 H 0 1 N N N N N N -13.825 -6.599 2.877 6.102 -4.720 -0.858 H10 WN9 39 WN9 H11 H11 H 0 1 N N N N N N -14.552 -8.142 3.441 6.361 -3.541 -2.166 H11 WN9 40 WN9 H12 H12 H 0 1 N N N N N N -16.650 -12.762 0.437 -2.876 1.078 -1.588 H12 WN9 41 WN9 H13 H13 H 0 1 N N N N N N -18.180 -16.781 -0.784 -7.501 -0.347 -1.618 H13 WN9 42 WN9 H14 H14 H 0 1 N N N N N N -15.108 -12.097 3.021 -2.889 1.845 1.385 H14 WN9 43 WN9 H15 H15 H 0 1 N N N N N N -15.779 -9.787 2.687 -1.287 3.508 0.950 H15 WN9 44 WN9 H16 H16 H 0 1 N N N N N N -15.355 -9.798 0.062 -0.323 2.332 -1.540 H16 WN9 45 WN9 H17 H17 H 0 1 N N N N N N -13.079 -9.486 0.677 1.030 3.154 0.427 H17 WN9 46 WN9 H18 H18 H 0 1 N N N N N N -13.934 -8.997 2.179 0.448 1.752 1.357 H18 WN9 47 WN9 H19 H19 H 0 1 N N N N N N -13.413 -13.701 2.328 -1.681 -1.218 1.167 H19 WN9 48 WN9 H20 H20 H 0 1 N N N N N N -15.134 -19.544 0.925 -5.561 -4.069 1.582 H20 WN9 49 WN9 H21 H21 H 0 1 N N N N N N -13.757 -18.668 0.864 -7.132 -4.071 0.987 H21 WN9 50 WN9 H22 H22 H 0 1 N N N N N N -17.255 -11.800 3.672 -4.300 3.539 0.468 H22 WN9 51 WN9 H23 H23 H 0 1 N N N N N N -17.973 -10.180 1.889 -2.683 4.617 -0.670 H23 WN9 52 WN9 H24 H24 H 0 1 N N N N N N -10.614 -11.992 3.943 4.059 2.924 -0.473 H24 WN9 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WN9 C7 N3 DOUB Y N 1 WN9 C7 N2 SING Y N 2 WN9 N3 C10 SING Y N 3 WN9 N2 C14 DOUB Y N 4 WN9 O4 C11 SING N N 5 WN9 O4 C6 SING N N 6 WN9 C10 C12 DOUB Y N 7 WN9 C10 N6 SING Y N 8 WN9 C14 C12 SING Y N 9 WN9 C14 N4 SING N N 10 WN9 C11 C13 SING N N 11 WN9 C11 C9 SING N N 12 WN9 C6 N6 SING N N 13 WN9 C6 C8 SING N N 14 WN9 C12 N5 SING Y N 15 WN9 N6 C15 SING Y N 16 WN9 O3 C9 SING N N 17 WN9 C13 O5 SING N N 18 WN9 C9 C8 SING N N 19 WN9 N5 C15 DOUB Y N 20 WN9 O6 P1 DOUB N N 21 WN9 O5 P1 SING N N 22 WN9 C8 O2 SING N N 23 WN9 P1 O8 SING N N 24 WN9 P1 O7 SING N N 25 WN9 C5 C3 SING N N 26 WN9 O8 C2 SING N N 27 WN9 N1 C1 SING N N 28 WN9 C2 C1 SING N N 29 WN9 C2 O1 DOUB N N 30 WN9 C3 C1 SING N N 31 WN9 C3 C4 SING N N 32 WN9 N1 H1 SING N N 33 WN9 N1 H2 SING N N 34 WN9 C1 H4 SING N N 35 WN9 C3 H5 SING N N 36 WN9 C4 H6 SING N N 37 WN9 C4 H7 SING N N 38 WN9 C4 H8 SING N N 39 WN9 C5 H9 SING N N 40 WN9 C5 H10 SING N N 41 WN9 C5 H11 SING N N 42 WN9 C6 H12 SING N N 43 WN9 C7 H13 SING N N 44 WN9 C8 H14 SING N N 45 WN9 C9 H15 SING N N 46 WN9 C11 H16 SING N N 47 WN9 C13 H17 SING N N 48 WN9 C13 H18 SING N N 49 WN9 C15 H19 SING N N 50 WN9 N4 H20 SING N N 51 WN9 N4 H21 SING N N 52 WN9 O2 H22 SING N N 53 WN9 O3 H23 SING N N 54 WN9 O7 H24 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WN9 InChI InChI 1.06 "InChI=1S/C15H23N6O8P/c1-6(2)8(16)15(24)29-30(25,26)27-3-7-10(22)11(23)14(28-7)21-5-20-9-12(17)18-4-19-13(9)21/h4-8,10-11,14,22-23H,3,16H2,1-2H3,(H,25,26)(H2,17,18,19)/t7-,8+,10-,11-,14-/m1/s1" WN9 InChIKey InChI 1.06 KAVINRUMCQFLGF-NIXGFCADSA-N WN9 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" WN9 SMILES CACTVS 3.385 "CC(C)[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" WN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" WN9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # _pdbx_chem_comp_identifier.comp_id WN9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{S})-2-azanyl-3-methyl-butanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WN9 "Create component" 2023-10-11 PDBC WN9 "Initial release" 2024-02-14 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WN9 _pdbx_chem_comp_synonyms.name "Valyl adenylate " _pdbx_chem_comp_synonyms.provenance PUBCHEM _pdbx_chem_comp_synonyms.type ? #