data_WNL # _chem_comp.id WNL _chem_comp.name "(6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H16 N2 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-15 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.354 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WNL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G1D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WNL C01 C1 C 0 1 N N N 4.527 6.099 18.175 0.293 -0.077 0.253 C01 WNL 1 WNL C02 C2 C 0 1 N N N 5.129 7.114 18.884 0.994 -1.234 0.070 C02 WNL 2 WNL C05 C3 C 0 1 N N N 6.396 5.870 16.613 2.299 1.162 0.100 C05 WNL 3 WNL C07 C4 C 0 1 N N N 4.509 7.800 20.084 0.284 -2.563 0.051 C07 WNL 4 WNL C13 C5 C 0 1 Y N N 3.076 4.423 19.229 -1.737 -0.874 1.456 C13 WNL 5 WNL C15 C6 C 0 1 Y N N 0.692 4.535 18.969 -3.925 -0.182 0.769 C15 WNL 6 WNL C16 C7 C 0 1 Y N N 0.810 5.705 18.201 -3.373 0.581 -0.251 C16 WNL 7 WNL C17 C8 C 0 1 Y N N 2.067 6.230 17.948 -2.001 0.612 -0.429 C17 WNL 8 WNL C19 C9 C 0 1 N N N -0.339 7.343 16.924 -5.588 1.221 -0.834 C19 WNL 9 WNL C03 C10 C 0 1 N N N 6.450 7.574 18.511 2.393 -1.166 -0.101 C03 WNL 10 WNL N04 N1 N 0 1 N N N 7.019 6.965 17.366 3.007 0.033 -0.082 N04 WNL 11 WNL C31 C11 C 0 1 N N N 8.261 7.478 16.857 4.460 0.107 -0.260 C31 WNL 12 WNL N06 N2 N 0 1 N N N 5.129 5.469 17.030 0.965 1.125 0.266 N06 WNL 13 WNL C08 C12 C 0 1 N N N 5.031 7.255 21.423 -0.042 -2.947 -1.394 C08 WNL 14 WNL O09 O1 O 0 1 N N N 7.125 8.515 19.076 3.040 -2.185 -0.266 O09 WNL 15 WNL S11 S1 S 0 1 N N N 7.087 5.204 15.304 3.109 2.670 0.121 S11 WNL 16 WNL C12 C13 C 0 1 Y N N 3.187 5.606 18.468 -1.173 -0.114 0.429 C12 WNL 17 WNL C14 C14 C 0 1 Y N N 1.826 3.891 19.499 -3.107 -0.906 1.618 C14 WNL 18 WNL O18 O2 O 0 1 N N N -0.391 6.234 17.772 -4.181 1.299 -1.075 O18 WNL 19 WNL H22 H1 H 0 1 N N N 4.737 8.875 20.030 0.927 -3.325 0.493 H22 WNL 20 WNL H21 H2 H 0 1 N N N 3.419 7.654 20.047 -0.640 -2.490 0.625 H21 WNL 21 WNL H29 H3 H 0 1 N N N 3.964 3.933 19.600 -1.101 -1.441 2.120 H29 WNL 22 WNL H31 H4 H 0 1 N N N -0.288 4.121 19.157 -4.996 -0.204 0.906 H31 WNL 23 WNL H32 H5 H 0 1 N N N 2.172 7.122 17.348 -1.571 1.205 -1.223 H32 WNL 24 WNL H35 H6 H 0 1 N N N -1.361 7.655 16.665 -6.116 1.839 -1.560 H35 WNL 25 WNL H34 H7 H 0 1 N N N 0.179 8.170 17.433 -5.916 0.187 -0.930 H34 WNL 26 WNL H33 H8 H 0 1 N N N 0.207 7.078 16.007 -5.804 1.579 0.173 H33 WNL 27 WNL H1 H10 H 0 1 N N N 8.563 6.898 15.972 4.691 0.208 -1.320 H1 WNL 28 WNL H2 H11 H 0 1 N N N 8.134 8.534 16.577 4.848 0.970 0.281 H2 WNL 29 WNL H3 H12 H 0 1 N N N 9.037 7.395 17.632 4.920 -0.802 0.127 H3 WNL 30 WNL H5 H14 H 0 1 N N N 4.641 4.748 16.537 0.472 1.951 0.395 H5 WNL 31 WNL H25 H15 H 0 1 N N N 4.545 7.791 22.252 -0.684 -2.185 -1.836 H25 WNL 32 WNL H24 H16 H 0 1 N N N 4.802 6.182 21.496 0.882 -3.020 -1.968 H24 WNL 33 WNL H23 H17 H 0 1 N N N 6.120 7.402 21.479 -0.555 -3.908 -1.408 H23 WNL 34 WNL H30 H18 H 0 1 N N N 1.724 3.002 20.103 -3.542 -1.497 2.409 H30 WNL 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WNL C01 C02 DOUB N N 1 WNL C02 C03 SING N N 2 WNL C03 N04 SING N N 3 WNL N04 C05 SING N N 4 WNL C01 N06 SING N N 5 WNL C05 N06 SING N N 6 WNL C02 C07 SING N N 7 WNL C07 C08 SING N N 8 WNL C03 O09 DOUB N N 9 WNL C05 S11 DOUB N N 10 WNL C01 C12 SING N N 11 WNL C12 C13 DOUB Y N 12 WNL C13 C14 SING Y N 13 WNL C14 C15 DOUB Y N 14 WNL C15 C16 SING Y N 15 WNL C12 C17 SING Y N 16 WNL C16 C17 DOUB Y N 17 WNL C16 O18 SING N N 18 WNL O18 C19 SING N N 19 WNL C07 H22 SING N N 20 WNL C07 H21 SING N N 21 WNL C13 H29 SING N N 22 WNL C15 H31 SING N N 23 WNL C17 H32 SING N N 24 WNL C19 H35 SING N N 25 WNL C19 H34 SING N N 26 WNL C19 H33 SING N N 27 WNL C31 H1 SING N N 28 WNL C31 H2 SING N N 29 WNL C31 H3 SING N N 30 WNL N06 H5 SING N N 31 WNL C08 H25 SING N N 32 WNL C08 H24 SING N N 33 WNL C08 H23 SING N N 34 WNL C14 H30 SING N N 35 WNL N04 C31 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WNL SMILES ACDLabs 12.01 "S=C1NC(c2cccc(OC)c2)=C(CC)C(=O)N1C" WNL InChI InChI 1.06 "InChI=1S/C14H16N2O2S/c1-4-11-12(15-14(19)16(2)13(11)17)9-6-5-7-10(8-9)18-3/h5-8H,4H2,1-3H3,(H,15,19)" WNL InChIKey InChI 1.06 FCPKQULJMYPFNN-UHFFFAOYSA-N WNL SMILES_CANONICAL CACTVS 3.385 "CCC1=C(NC(=S)N(C)C1=O)c2cccc(OC)c2" WNL SMILES CACTVS 3.385 "CCC1=C(NC(=S)N(C)C1=O)c2cccc(OC)c2" WNL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=S)N(C1=O)C)c2cccc(c2)OC" WNL SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(NC(=S)N(C1=O)C)c2cccc(c2)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WNL "SYSTEMATIC NAME" ACDLabs 12.01 "(6M)-5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-2,3-dihydropyrimidin-4(1H)-one" WNL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-ethyl-6-(3-methoxyphenyl)-3-methyl-2-sulfanylidene-1~{H}-pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WNL "Create component" 2023-05-15 RCSB WNL "Initial release" 2023-06-14 RCSB #