data_WNT # _chem_comp.id WNT _chem_comp.name "(4~{S},9~{S},10~{S},12~{E})-16-methoxy-4-methyl-9,10,18-tris(oxidanyl)-3-oxabicyclo[12.4.0]octadeca-1(18),12,14,16-tetraene-2,8-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2025-01-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.390 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WNT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WNT C3 C1 C 0 1 Y N N N N N ? ? ? 2.948 -1.188 -0.131 C3 WNT 1 WNT C5 C2 C 0 1 Y N N N N N ? ? ? 1.651 0.865 -0.238 C5 WNT 2 WNT C6 C3 C 0 1 Y N N N N N ? ? ? 2.807 1.605 -0.105 C6 WNT 3 WNT C9 C4 C 0 1 N N N N N N ? ? ? -1.346 3.259 -0.341 C9 WNT 4 WNT C10 C5 C 0 1 N N S N N N ? ? ? -2.382 2.418 0.405 C10 WNT 5 WNT C11 C6 C 0 1 N N S N N N ? ? ? -3.025 1.409 -0.547 C11 WNT 6 WNT C8 C7 C 0 1 N N N N N N ? ? ? 0.038 2.717 -0.082 C8 WNT 7 WNT C2 C8 C 0 1 Y N N N N N ? ? ? 4.103 -0.428 -0.021 C2 WNT 8 WNT C7 C9 C 0 1 N N N N N N ? ? ? 0.331 1.483 -0.442 C7 WNT 9 WNT C16 C10 C 0 1 N N S N N N ? ? ? -0.877 -3.298 -0.361 C16 WNT 10 WNT C15 C11 C 0 1 N N N N N N ? ? ? -2.046 -2.461 -0.862 C15 WNT 11 WNT C13 C12 C 0 1 N N N N N N ? ? ? -4.004 -1.009 -0.321 C13 WNT 12 WNT C12 C13 C 0 1 N N N N N N ? ? ? -3.786 0.374 0.240 C12 WNT 13 WNT C18 C14 C 0 1 N N N N N N ? ? ? 0.452 -1.308 -0.150 C18 WNT 14 WNT C17 C15 C 0 1 N N N N N N ? ? ? -1.047 -3.704 1.102 C17 WNT 15 WNT C C16 C 0 1 N N N N N N ? ? ? 6.394 0.959 0.270 C WNT 16 WNT O O1 O 0 1 N N N N N N ? ? ? 5.168 1.684 0.157 O WNT 17 WNT C1 C17 C 0 1 Y N N N N N ? ? ? 4.032 0.956 0.010 C1 WNT 18 WNT C14 C18 C 0 1 N N N N N N ? ? ? -2.948 -1.961 0.259 C14 WNT 19 WNT C4 C19 C 0 1 Y N N N N N ? ? ? 1.710 -0.551 -0.164 C4 WNT 20 WNT O1 O2 O 0 1 N N N N N N ? ? ? 3.030 -2.542 -0.164 O1 WNT 21 WNT O2 O3 O 0 1 N N N N N N ? ? ? -1.750 1.729 1.484 O2 WNT 22 WNT O3 O4 O 0 1 N N N N N N ? ? ? -3.926 2.091 -1.425 O3 WNT 23 WNT O4 O5 O 0 1 N N N N N N ? ? ? -4.233 0.654 1.326 O4 WNT 24 WNT O5 O6 O 0 1 N N N N N N ? ? ? 0.374 -2.585 -0.537 O5 WNT 25 WNT O6 O7 O 0 1 N N N N N N ? ? ? -0.543 -0.747 0.268 O6 WNT 26 WNT H8 H1 H 0 1 N N N N N N ? ? ? 2.763 2.684 -0.091 H8 WNT 27 WNT H11 H2 H 0 1 N N N N N N ? ? ? -1.551 3.224 -1.411 H11 WNT 28 WNT H12 H3 H 0 1 N N N N N N ? ? ? -1.401 4.291 0.004 H12 WNT 29 WNT H H4 H 0 1 N N N N N N ? ? ? -3.156 3.077 0.805 H WNT 30 WNT H1 H5 H 0 1 N N N N N N ? ? ? -2.254 0.917 -1.139 H1 WNT 31 WNT H10 H6 H 0 1 N N N N N N ? ? ? 0.778 3.337 0.398 H10 WNT 32 WNT H6 H7 H 0 1 N N N N N N ? ? ? 5.062 -0.919 0.043 H6 WNT 33 WNT H9 H8 H 0 1 N N N N N N ? ? ? -0.437 0.900 -0.947 H9 WNT 34 WNT H2 H9 H 0 1 N N N N N N ? ? ? -0.830 -4.221 -0.964 H2 WNT 35 WNT H18 H10 H 0 1 N N N N N N ? ? ? -1.666 -1.605 -1.429 H18 WNT 36 WNT H17 H11 H 0 1 N N N N N N ? ? ? -2.647 -3.068 -1.551 H17 WNT 37 WNT H15 H12 H 0 1 N N N N N N ? ? ? -4.997 -1.363 -0.040 H15 WNT 38 WNT H131 H13 H 0 0 N N N N N N ? ? ? -3.915 -0.985 -1.405 H131 WNT 39 WNT H21 H14 H 0 1 N N N N N N ? ? ? -1.958 -4.292 1.212 H21 WNT 40 WNT H20 H15 H 0 1 N N N N N N ? ? ? -0.190 -4.299 1.416 H20 WNT 41 WNT H19 H16 H 0 1 N N N N N N ? ? ? -1.115 -2.810 1.721 H19 WNT 42 WNT H5 H17 H 0 1 N N N N N N ? ? ? 6.351 0.306 1.142 H5 WNT 43 WNT H4 H18 H 0 1 N N N N N N ? ? ? 6.545 0.358 -0.627 H4 WNT 44 WNT H3 H19 H 0 1 N N N N N N ? ? ? 7.222 1.660 0.382 H3 WNT 45 WNT H16 H20 H 0 1 N N N N N N ? ? ? -3.469 -2.800 0.724 H16 WNT 46 WNT H141 H21 H 0 0 N N N N N N ? ? ? -2.373 -1.421 1.007 H141 WNT 47 WNT H7 H22 H 0 1 N N N N N N ? ? ? 2.986 -2.960 0.706 H7 WNT 48 WNT H13 H23 H 0 1 N N N N N N ? ? ? -1.335 2.313 2.134 H13 WNT 49 WNT H14 H24 H 0 1 N N N N N N ? ? ? -4.372 1.512 -2.059 H14 WNT 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WNT O6 C18 DOUB N N 1 WNT C18 C4 SING N N 2 WNT C18 O5 SING N N 3 WNT C4 C3 DOUB Y N 4 WNT C4 C5 SING Y N 5 WNT C3 O1 SING N N 6 WNT C3 C2 SING Y N 7 WNT C2 C1 DOUB Y N 8 WNT O5 C16 SING N N 9 WNT C16 C17 SING N N 10 WNT C16 C15 SING N N 11 WNT C15 C14 SING N N 12 WNT C14 C13 SING N N 13 WNT C13 C12 SING N N 14 WNT C12 O4 DOUB N N 15 WNT C12 C11 SING N N 16 WNT C11 O3 SING N N 17 WNT C11 C10 SING N N 18 WNT C10 O2 SING N N 19 WNT C10 C9 SING N N 20 WNT C9 C8 SING N N 21 WNT C8 C7 DOUB N E 22 WNT C7 C5 SING N N 23 WNT C5 C6 DOUB Y N 24 WNT C6 C1 SING Y N 25 WNT C1 O SING N N 26 WNT O C SING N N 27 WNT C6 H8 SING N N 28 WNT C9 H11 SING N N 29 WNT C9 H12 SING N N 30 WNT C10 H SING N N 31 WNT C11 H1 SING N N 32 WNT C8 H10 SING N N 33 WNT C2 H6 SING N N 34 WNT C7 H9 SING N N 35 WNT C16 H2 SING N N 36 WNT C15 H18 SING N N 37 WNT C15 H17 SING N N 38 WNT C13 H15 SING N N 39 WNT C13 H131 SING N N 40 WNT C17 H21 SING N N 41 WNT C17 H20 SING N N 42 WNT C17 H19 SING N N 43 WNT C H5 SING N N 44 WNT C H4 SING N N 45 WNT C H3 SING N N 46 WNT C14 H16 SING N N 47 WNT C14 H141 SING N N 48 WNT O1 H7 SING N N 49 WNT O2 H13 SING N N 50 WNT O3 H14 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WNT InChI InChI 1.06 "InChI=1S/C19H24O7/c1-11-5-3-7-14(20)18(23)15(21)8-4-6-12-9-13(25-2)10-16(22)17(12)19(24)26-11/h4,6,9-11,15,18,21-23H,3,5,7-8H2,1-2H3/t11-,15?,18-/m0/s1" WNT InChIKey InChI 1.06 WFIUAGOQGGAREU-DQMVDXCWSA-N WNT SMILES_CANONICAL CACTVS 3.385 "COc1cc(O)c2C(=O)O[C@@H](C)CCCC(=O)[C@@H](O)[C@@H](O)C\C=C\c2c1" WNT SMILES CACTVS 3.385 "COc1cc(O)c2C(=O)O[CH](C)CCCC(=O)[CH](O)[CH](O)CC=Cc2c1" WNT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CCCC(=O)[C@H]([C@H](C/C=C/c2cc(cc(c2C(=O)O1)O)OC)O)O" WNT SMILES "OpenEye OEToolkits" 2.0.7 "CC1CCCC(=O)C(C(CC=Cc2cc(cc(c2C(=O)O1)O)OC)O)O" # _pdbx_chem_comp_identifier.comp_id WNT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{S},9~{S},10~{S},12~{E})-16-methoxy-4-methyl-9,10,18-tris(oxidanyl)-3-oxabicyclo[12.4.0]octadeca-1(18),12,14,16-tetraene-2,8-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WNT "Create component" 2023-10-09 PDBE WNT "Modify PCM" 2024-09-27 PDBE WNT "Initial release" 2025-01-22 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WNT _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #