data_WOD # _chem_comp.id WOD _chem_comp.name "3-cyclopropyl-5-[(3R)-pyrrolidin-3-yl]-1,2,4-oxadiazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-30 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.219 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WOD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WOD C10 C1 C 0 1 N N N -29.499 31.764 -23.436 2.588 -0.766 -0.956 C10 WOD 1 WOD N12 N1 N 0 1 N N N -28.607 32.044 -25.707 3.877 0.527 0.598 N12 WOD 2 WOD C13 C2 C 0 1 N N N -29.832 31.540 -25.722 2.490 1.064 0.670 C13 WOD 3 WOD C01 C3 C 0 1 N N N -35.101 31.590 -26.378 -4.108 0.770 0.550 C01 WOD 4 WOD C02 C4 C 0 1 N N N -35.285 32.808 -25.473 -4.225 -0.685 0.090 C02 WOD 5 WOD C03 C5 C 0 1 N N N -34.970 31.442 -24.862 -3.211 0.249 -0.574 C03 WOD 6 WOD C04 C6 C 0 1 Y N N -33.708 30.932 -24.196 -1.753 0.032 -0.257 C04 WOD 7 WOD C07 C7 C 0 1 Y N N -31.585 30.712 -23.948 0.360 0.148 -0.274 C07 WOD 8 WOD C09 C8 C 0 1 N N R -30.082 30.900 -24.222 1.791 0.502 -0.586 C09 WOD 9 WOD C11 C9 C 0 1 N N N -28.157 32.026 -24.222 3.704 -0.864 0.107 C11 WOD 10 WOD N05 N2 N 0 1 Y N N -33.527 30.104 -23.158 -1.274 -0.771 0.645 N05 WOD 11 WOD N08 N3 N 0 1 Y N N -32.513 31.300 -24.690 -0.710 0.628 -0.861 N08 WOD 12 WOD O06 O1 O 0 1 Y N N -32.198 29.979 -23.017 -0.062 -0.717 0.653 O06 WOD 13 WOD H1 H1 H 0 1 N N N -30.094 32.684 -23.334 1.945 -1.644 -0.911 H1 WOD 14 WOD H2 H2 H 0 1 N N N -29.307 31.339 -22.440 3.021 -0.664 -1.951 H2 WOD 15 WOD H3 H3 H 0 1 N N N -27.993 31.483 -26.263 4.440 1.069 -0.040 H3 WOD 16 WOD H5 H5 H 0 1 N N N -30.568 32.331 -25.927 1.992 0.710 1.572 H5 WOD 17 WOD H6 H6 H 0 1 N N N -29.913 30.756 -26.490 2.503 2.154 0.644 H6 WOD 18 WOD H7 H7 H 0 1 N N N -35.967 31.157 -26.900 -4.914 1.450 0.276 H7 WOD 19 WOD H8 H8 H 0 1 N N N -34.210 31.510 -27.017 -3.644 0.955 1.519 H8 WOD 20 WOD H9 H9 H 0 1 N N N -34.526 33.604 -25.461 -3.838 -1.456 0.756 H9 WOD 21 WOD H10 H10 H 0 1 N N N -36.283 33.251 -25.344 -5.107 -0.961 -0.487 H10 WOD 22 WOD H11 H11 H 0 1 N N N -35.869 30.982 -24.426 -3.426 0.587 -1.588 H11 WOD 23 WOD H12 H12 H 0 1 N N N -29.592 29.916 -24.197 1.833 1.227 -1.399 H12 WOD 24 WOD H13 H13 H 0 1 N N N -27.431 31.220 -24.041 3.395 -1.520 0.921 H13 WOD 25 WOD H14 H14 H 0 1 N N N -27.714 32.991 -23.933 4.629 -1.225 -0.344 H14 WOD 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WOD C01 C02 SING N N 1 WOD C01 C03 SING N N 2 WOD C13 N12 SING N N 3 WOD C13 C09 SING N N 4 WOD N12 C11 SING N N 5 WOD C02 C03 SING N N 6 WOD C03 C04 SING N N 7 WOD N08 C04 SING Y N 8 WOD N08 C07 DOUB Y N 9 WOD C09 C07 SING N N 10 WOD C09 C10 SING N N 11 WOD C11 C10 SING N N 12 WOD C04 N05 DOUB Y N 13 WOD C07 O06 SING Y N 14 WOD N05 O06 SING Y N 15 WOD C10 H1 SING N N 16 WOD C10 H2 SING N N 17 WOD N12 H3 SING N N 18 WOD C13 H5 SING N N 19 WOD C13 H6 SING N N 20 WOD C01 H7 SING N N 21 WOD C01 H8 SING N N 22 WOD C02 H9 SING N N 23 WOD C02 H10 SING N N 24 WOD C03 H11 SING N N 25 WOD C09 H12 SING N N 26 WOD C11 H13 SING N N 27 WOD C11 H14 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WOD SMILES ACDLabs 12.01 "C1C(CNC1)c3onc(C2CC2)n3" WOD InChI InChI 1.03 "InChI=1S/C9H13N3O/c1-2-6(1)8-11-9(13-12-8)7-3-4-10-5-7/h6-7,10H,1-5H2/t7-/m1/s1" WOD InChIKey InChI 1.03 UHWKRAJPWOGTQP-SSDOTTSWSA-N WOD SMILES_CANONICAL CACTVS 3.385 "C1C[C@H](CN1)c2onc(n2)C3CC3" WOD SMILES CACTVS 3.385 "C1C[CH](CN1)c2onc(n2)C3CC3" WOD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CNC[C@@H]1c2nc(no2)C3CC3" WOD SMILES "OpenEye OEToolkits" 2.0.7 "C1CC1c2nc(on2)C3CCNC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WOD "SYSTEMATIC NAME" ACDLabs 12.01 "3-cyclopropyl-5-[(3R)-pyrrolidin-3-yl]-1,2,4-oxadiazole" WOD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-cyclopropyl-5-[(3~{R})-pyrrolidin-3-yl]-1,2,4-oxadiazole" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WOD "Create component" 2020-10-30 RCSB WOD "Initial release" 2020-11-11 RCSB ##