data_WOK # _chem_comp.id WOK _chem_comp.name "(1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H37 F4 N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Inhibitor TKB-272, hemithioacetal bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 655.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WOK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UH9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WOK NAI N1 N 0 1 Y N N N N N 7.528 -3.479 22.242 -5.703 0.051 0.631 NAI WOK 1 WOK CAD C1 C 0 1 Y N N N N N 8.127 -4.167 23.251 -6.836 -0.214 -0.048 CAD WOK 2 WOK CAE C2 C 0 1 Y N N N N N 7.589 -4.489 24.449 -7.796 -1.224 0.166 CAE WOK 3 WOK CAF C3 C 0 1 Y N N N N N 8.306 -5.182 25.435 -8.895 -1.320 -0.654 CAF WOK 4 WOK FBS F1 F 0 1 N N N N N N 7.789 -5.471 26.529 -9.808 -2.292 -0.438 FBS WOK 5 WOK CAA C4 C 0 1 Y N N N N N 9.607 -5.566 25.174 -9.075 -0.425 -1.702 CAA WOK 6 WOK CAB C5 C 0 1 Y N N N N N 10.120 -5.232 23.924 -8.149 0.568 -1.927 CAB WOK 7 WOK CAC C6 C 0 1 Y N N N N N 9.413 -4.554 22.996 -7.030 0.680 -1.106 CAC WOK 8 WOK SAG S1 S 0 1 Y N N N N N 9.871 -4.022 21.393 -5.680 1.811 -1.116 SAG WOK 9 WOK CAH C7 C 0 1 Y N N N N N 8.254 -3.281 21.124 -4.988 1.036 0.238 CAH WOK 10 WOK C C8 C 0 1 N N S N N N 7.703 -2.648 20.055 -3.697 1.459 0.889 C WOK 11 WOK O O1 O 0 1 N N N N N N 6.794 -3.246 19.441 -3.860 1.469 2.309 O WOK 12 WOK CA C9 C 0 1 N N S N N N 7.691 -1.080 20.180 -2.588 0.476 0.510 CA WOK 13 WOK CB C10 C 0 1 N N N N N N 7.166 -0.378 18.933 -2.905 -0.901 1.097 CB WOK 14 WOK CG C11 C 0 1 N N S N N N 6.735 1.023 19.352 -1.837 -1.903 0.653 CG WOK 15 WOK CD1 C12 C 0 1 N N N N N N 5.450 0.878 20.086 -2.382 -3.348 0.738 CD1 WOK 16 WOK CAP C13 C 0 1 N N N N N N 4.739 2.149 19.688 -1.133 -4.129 1.202 CAP WOK 17 WOK NAQ N2 N 0 1 N N N N N N 5.313 2.496 18.392 -0.298 -3.149 1.907 NAQ WOK 18 WOK CD2 C14 C 0 1 N N N N N N 6.445 1.825 18.247 -0.668 -1.891 1.613 CD2 WOK 19 WOK OAS O2 O 0 1 N N N N N N 7.164 1.955 17.257 -0.140 -0.891 2.052 OAS WOK 20 WOK N N3 N 0 1 N N N N N N 9.022 -0.524 20.461 -1.309 0.952 1.044 N WOK 21 WOK CAU C15 C 0 1 N N N N N N 9.432 -0.119 21.668 -0.212 0.957 0.261 CAU WOK 22 WOK OAW O3 O 0 1 N N N N N N 8.748 -0.206 22.673 -0.264 0.494 -0.859 OAW WOK 23 WOK CAV C16 C 0 1 N N S N N N 10.758 0.325 21.733 1.079 1.538 0.777 CAV WOK 24 WOK CBA C17 C 0 1 N N R N N N 11.610 -0.686 22.472 1.057 3.078 0.669 CBA WOK 25 WOK CBB C18 C 0 1 N N N N N N 13.120 -0.385 22.754 2.396 3.819 0.650 CBB WOK 26 WOK CBC C19 C 0 1 N N N N N N 13.852 0.798 22.074 3.635 3.048 1.111 CBC WOK 27 WOK CBD C20 C 0 1 N N N N N N 14.106 -1.563 23.020 2.382 5.310 0.993 CBD WOK 28 WOK CAZ C21 C 0 1 N N S N N N 11.985 -0.081 23.782 1.753 3.393 -0.671 CAZ WOK 29 WOK CAY C22 C 0 1 N N N N N N 11.442 1.289 23.883 2.135 2.016 -1.256 CAY WOK 30 WOK NAX N4 N 0 1 N N N N N N 10.848 1.531 22.493 2.213 1.119 -0.079 NAX WOK 31 WOK CBE C23 C 0 1 N N N N N N 10.362 2.651 21.964 3.112 0.144 0.159 CBE WOK 32 WOK OBG O4 O 0 1 N N N N N N 9.883 2.697 20.834 3.013 -0.543 1.154 OBG WOK 33 WOK CBF C24 C 0 1 N N S N N N 10.434 3.889 22.901 4.241 -0.094 -0.811 CBF WOK 34 WOK CBO C25 C 0 1 N N N N N N 9.051 4.372 23.449 3.790 -1.086 -1.885 CBO WOK 35 WOK CBQ C26 C 0 1 N N N N N N 8.160 4.943 22.314 4.944 -1.347 -2.855 CBQ WOK 36 WOK CBR C27 C 0 1 N N N N N N 9.310 5.451 24.533 3.375 -2.401 -1.222 CBR WOK 37 WOK CBP C28 C 0 1 N N N N N N 8.337 3.197 24.164 2.601 -0.503 -2.651 CBP WOK 38 WOK NBH N5 N 0 1 N N N N N N 11.149 4.950 22.184 5.394 -0.641 -0.093 NBH WOK 39 WOK CBI C29 C 0 1 N N N N N N 12.349 5.378 22.622 6.637 -0.473 -0.587 CBI WOK 40 WOK OBN O5 O 0 1 N N N N N N 12.902 4.899 23.611 6.800 0.132 -1.625 OBN WOK 41 WOK CBJ C30 C 0 1 N N N N N N 13.024 6.471 21.752 7.824 -1.036 0.152 CBJ WOK 42 WOK FBL F2 F 0 1 N N N N N N 14.081 6.927 22.341 8.996 -0.735 -0.550 FBL WOK 43 WOK FBM F3 F 0 1 N N N N N N 12.103 7.599 21.481 7.889 -0.471 1.430 FBM WOK 44 WOK FBK F4 F 0 1 N N N N N N 13.426 5.820 20.482 7.689 -2.424 0.262 FBK WOK 45 WOK H1 H1 H 0 1 N N N N N N 6.568 -4.202 24.654 -7.668 -1.926 0.977 H1 WOK 46 WOK H2 H2 H 0 1 N N N N N N 10.197 -6.099 25.904 -9.942 -0.509 -2.340 H2 WOK 47 WOK H3 H3 H 0 1 N N N N N N 11.131 -5.529 23.686 -8.292 1.262 -2.742 H3 WOK 48 WOK H4 H4 H 0 1 N N N N N N 7.023 -0.825 21.016 -2.523 0.402 -0.575 H4 WOK 49 WOK H5 H5 H 0 1 N N N N N N 6.307 -0.930 18.523 -2.914 -0.839 2.185 H5 WOK 50 WOK H6 H6 H 0 1 N N N N N N 7.959 -0.317 18.173 -3.882 -1.230 0.744 H6 WOK 51 WOK H7 H7 H 0 1 N N N N N N 7.501 1.475 19.999 -1.504 -1.680 -0.360 H7 WOK 52 WOK H8 H8 H 0 1 N N N N N N 4.896 -0.014 19.757 -3.183 -3.420 1.474 H8 WOK 53 WOK H9 H9 H 0 1 N N N N N N 5.610 0.829 21.173 -2.720 -3.695 -0.238 H9 WOK 54 WOK H10 H10 H 0 1 N N N N N N 4.926 2.946 20.423 -1.421 -4.934 1.878 H10 WOK 55 WOK H11 H11 H 0 1 N N N N N N 3.656 1.978 19.601 -0.599 -4.532 0.342 H11 WOK 56 WOK H12 H12 H 0 1 N N N N N N 4.919 3.131 17.728 0.428 -3.380 2.508 H12 WOK 57 WOK H13 H13 H 0 1 N N N N N N 9.664 -0.443 19.699 -1.252 1.263 1.961 H13 WOK 58 WOK H14 H14 H 0 1 N N N N N N 11.170 0.476 20.724 1.247 1.232 1.810 H14 WOK 59 WOK H15 H15 H 0 1 N N N N N N 11.304 -1.742 22.446 0.162 3.596 1.011 H15 WOK 60 WOK H16 H16 H 0 1 N N N N N N 14.898 0.825 22.412 3.778 2.175 0.474 H16 WOK 61 WOK H17 H17 H 0 1 N N N N N N 13.823 0.668 20.982 4.510 3.694 1.046 H17 WOK 62 WOK H18 H18 H 0 1 N N N N N N 13.355 1.741 22.345 3.498 2.725 2.143 H18 WOK 63 WOK H19 H19 H 0 1 N N N N N N 13.567 -2.391 23.503 1.991 5.447 2.001 H19 WOK 64 WOK H20 H20 H 0 1 N N N N N N 14.530 -1.908 22.066 3.397 5.704 0.941 H20 WOK 65 WOK H21 H21 H 0 1 N N N N N N 14.917 -1.220 23.679 1.749 5.840 0.282 H21 WOK 66 WOK H22 H22 H 0 1 N N N N N N 11.946 -0.722 24.675 1.372 4.153 -1.353 H22 WOK 67 WOK H23 H23 H 0 1 N N N N N N 12.239 2.014 24.103 1.366 1.670 -1.946 H23 WOK 68 WOK H24 H24 H 0 1 N N N N N N 10.666 1.350 24.660 3.100 2.070 -1.759 H24 WOK 69 WOK H25 H25 H 0 1 N N N N N N 11.039 3.598 23.772 4.519 0.849 -1.281 H25 WOK 70 WOK H26 H26 H 0 1 N N N N N N 7.198 5.272 22.733 5.792 -1.762 -2.309 H26 WOK 71 WOK H27 H27 H 0 1 N N N N N N 8.668 5.799 21.845 4.624 -2.054 -3.620 H27 WOK 72 WOK H28 H28 H 0 1 N N N N N N 7.983 4.163 21.559 5.241 -0.410 -3.327 H28 WOK 73 WOK H29 H29 H 0 1 N N N N N N 9.942 5.029 25.328 2.553 -2.216 -0.531 H29 WOK 74 WOK H30 H30 H 0 1 N N N N N N 9.820 6.313 24.078 3.054 -3.108 -1.987 H30 WOK 75 WOK H31 H31 H 0 1 N N N N N N 8.351 5.777 24.962 4.222 -2.816 -0.676 H31 WOK 76 WOK H32 H32 H 0 1 N N N N N N 8.983 2.807 24.964 2.904 0.422 -3.141 H32 WOK 77 WOK H33 H33 H 0 1 N N N N N N 7.391 3.553 24.598 2.267 -1.220 -3.402 H33 WOK 78 WOK H34 H34 H 0 1 N N N N N N 8.129 2.398 23.437 1.787 -0.298 -1.957 H34 WOK 79 WOK H35 H35 H 0 1 N N N N N N 10.744 5.358 21.366 5.264 -1.125 0.738 H35 WOK 80 WOK H36 H36 H 0 1 N Y N N N N 8.530 -2.745 19.336 -3.428 2.459 0.547 H36 WOK 81 WOK H37 H37 H 0 1 N N N N N N 6.958 -4.181 19.464 -4.100 0.611 2.683 H37 WOK 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WOK OAS CD2 DOUB N N 1 WOK CD2 NAQ SING N N 2 WOK CD2 CG SING N N 3 WOK NAQ CAP SING N N 4 WOK CB CG SING N N 5 WOK CB CA SING N N 6 WOK CG CD1 SING N N 7 WOK O C SING N N 8 WOK CAP CD1 SING N N 9 WOK C CA SING N N 10 WOK C CAH SING N N 11 WOK CA N SING N N 12 WOK N CAU SING N N 13 WOK FBK CBJ SING N N 14 WOK OBG CBE DOUB N N 15 WOK CAH SAG SING Y N 16 WOK CAH NAI DOUB Y N 17 WOK SAG CAC SING Y N 18 WOK FBM CBJ SING N N 19 WOK CAU CAV SING N N 20 WOK CAU OAW DOUB N N 21 WOK CAV CBA SING N N 22 WOK CAV NAX SING N N 23 WOK CBJ FBL SING N N 24 WOK CBJ CBI SING N N 25 WOK CBE NAX SING N N 26 WOK CBE CBF SING N N 27 WOK CBC CBB SING N N 28 WOK NBH CBI SING N N 29 WOK NBH CBF SING N N 30 WOK NAI CAD SING Y N 31 WOK CBQ CBO SING N N 32 WOK CBA CBB SING N N 33 WOK CBA CAZ SING N N 34 WOK NAX CAY SING N N 35 WOK CBI OBN DOUB N N 36 WOK CBB CBD SING N N 37 WOK CBB CAZ SING N N 38 WOK CBF CBO SING N N 39 WOK CAC CAD DOUB Y N 40 WOK CAC CAB SING Y N 41 WOK CAD CAE SING Y N 42 WOK CBO CBP SING N N 43 WOK CBO CBR SING N N 44 WOK CAZ CAY SING N N 45 WOK CAB CAA DOUB Y N 46 WOK CAE CAF DOUB Y N 47 WOK CAA CAF SING Y N 48 WOK CAF FBS SING N N 49 WOK CAE H1 SING N N 50 WOK CAA H2 SING N N 51 WOK CAB H3 SING N N 52 WOK CA H4 SING N N 53 WOK CB H5 SING N N 54 WOK CB H6 SING N N 55 WOK CG H7 SING N N 56 WOK CD1 H8 SING N N 57 WOK CD1 H9 SING N N 58 WOK CAP H10 SING N N 59 WOK CAP H11 SING N N 60 WOK NAQ H12 SING N N 61 WOK N H13 SING N N 62 WOK CAV H14 SING N N 63 WOK CBA H15 SING N N 64 WOK CBC H16 SING N N 65 WOK CBC H17 SING N N 66 WOK CBC H18 SING N N 67 WOK CBD H19 SING N N 68 WOK CBD H20 SING N N 69 WOK CBD H21 SING N N 70 WOK CAZ H22 SING N N 71 WOK CAY H23 SING N N 72 WOK CAY H24 SING N N 73 WOK CBF H25 SING N N 74 WOK CBQ H26 SING N N 75 WOK CBQ H27 SING N N 76 WOK CBQ H28 SING N N 77 WOK CBR H29 SING N N 78 WOK CBR H30 SING N N 79 WOK CBR H31 SING N N 80 WOK CBP H32 SING N N 81 WOK CBP H33 SING N N 82 WOK CBP H34 SING N N 83 WOK NBH H35 SING N N 84 WOK C H36 SING N N 85 WOK O H37 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WOK SMILES ACDLabs 12.01 "FC(F)(F)C(=O)NC(C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3cc(F)ccc3s1)C2(C)C)C(C)(C)C" WOK InChI InChI 1.06 "InChI=1S/C30H37F4N5O5S/c1-28(2,3)22(38-27(44)30(32,33)34)26(43)39-12-15-19(29(15,4)5)20(39)24(42)36-17(10-13-8-9-35-23(13)41)21(40)25-37-16-11-14(31)6-7-18(16)45-25/h6-7,11,13,15,17,19-22,40H,8-10,12H2,1-5H3,(H,35,41)(H,36,42)(H,38,44)/t13-,15-,17-,19-,20-,21-,22+/m0/s1" WOK InChIKey InChI 1.06 AVAISVNJDSSFQV-UDQBHXPNSA-N WOK SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)c4sc5ccc(F)cc5n4)C2(C)C" WOK SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)c4sc5ccc(F)cc5n4)C2(C)C" WOK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](c4nc5cc(ccc5s4)F)O)C" WOK SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C(c4nc5cc(ccc5s4)F)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WOK "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(1S,2S)-1-(5-fluoro-1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" WOK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-~{N}-[(1~{S},2~{S})-1-(5-fluoranyl-1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WOK "Create component" 2023-10-09 RCSB WOK "Other modification" 2023-11-08 RCSB WOK "Initial release" 2023-12-13 RCSB WOK "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WOK _pdbx_chem_comp_synonyms.name "Inhibitor TKB-272, hemithioacetal bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WOK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #