data_WPD # _chem_comp.id WPD _chem_comp.name "(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 F2 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-03 _chem_comp.pdbx_modified_date 2021-07-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WPD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KM7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WPD C10 C1 C 0 1 Y N N -20.437 18.521 -5.626 -5.418 -0.028 0.515 C10 WPD 1 WPD O11 O1 O 0 1 N N N -21.083 17.314 -5.906 -4.173 -0.459 0.853 O11 WPD 2 WPD C01 C2 C 0 1 N N N -23.310 20.015 -5.025 -6.080 -3.211 -0.049 C01 WPD 3 WPD C02 C3 C 0 1 N N N -22.277 19.292 -4.124 -5.696 -2.041 -0.957 C02 WPD 4 WPD C03 C4 C 0 1 Y N N -20.942 19.459 -4.782 -6.206 -0.754 -0.361 C03 WPD 5 WPD C05 C5 C 0 1 Y N N -19.092 20.790 -5.055 -7.875 0.824 -0.152 C05 WPD 6 WPD C08 C6 C 0 1 Y N N -19.154 18.788 -6.180 -5.936 1.159 1.049 C08 WPD 7 WPD C12 C7 C 0 1 N N N -21.724 17.176 -7.228 -3.088 -0.017 0.035 C12 WPD 8 WPD C13 C8 C 0 1 N N N -22.635 15.962 -7.131 -1.777 -0.600 0.567 C13 WPD 9 WPD C14 C9 C 0 1 N N N -23.912 16.335 -6.389 -0.616 -0.126 -0.309 C14 WPD 10 WPD C16 C10 C 0 1 Y N N -25.739 17.915 -6.829 1.745 -0.345 -0.483 C16 WPD 11 WPD C17 C11 C 0 1 Y N N -26.425 17.575 -5.685 1.684 0.482 -1.595 C17 WPD 12 WPD C18 C12 C 0 1 Y N N -27.661 18.171 -5.425 2.842 0.816 -2.271 C18 WPD 13 WPD C19 C13 C 0 1 Y N N -28.212 19.108 -6.274 4.061 0.327 -1.839 C19 WPD 14 WPD C20 C14 C 0 1 Y N N -27.509 19.466 -7.439 4.125 -0.498 -0.731 C20 WPD 15 WPD C21 C15 C 0 1 N N N -28.071 20.490 -8.425 5.455 -1.029 -0.264 C21 WPD 16 WPD C22 C16 C 0 1 N N S -27.282 21.817 -8.463 6.068 -0.054 0.744 C22 WPD 17 WPD C23 C17 C 0 1 N N N -28.197 22.898 -7.964 6.383 1.270 0.046 C23 WPD 18 WPD C26 C18 C 0 1 N N N -26.835 22.188 -9.919 7.338 -0.642 1.303 C26 WPD 19 WPD C29 C19 C 0 1 Y N N -26.271 18.871 -7.699 2.970 -0.835 -0.052 C29 WPD 20 WPD F24 F1 F 0 1 N N N -28.668 22.662 -6.674 7.200 1.029 -1.064 F24 WPD 21 WPD F25 F2 F 0 1 N N N -27.521 24.096 -7.966 5.192 1.872 -0.373 F25 WPD 22 WPD N04 N1 N 0 1 Y N N -20.286 20.600 -4.489 -7.416 -0.305 -0.669 N04 WPD 23 WPD N06 N2 N 0 1 N N N -18.446 21.941 -4.770 -9.144 1.258 -0.500 N06 WPD 24 WPD N07 N3 N 0 1 Y N N -18.512 19.924 -5.902 -7.158 1.544 0.698 N07 WPD 25 WPD N09 N4 N 0 1 N N N -18.583 17.890 -7.014 -5.183 1.921 1.931 N09 WPD 26 WPD O15 O2 O 0 1 N N N -24.505 17.379 -7.165 0.609 -0.671 0.187 O15 WPD 27 WPD O27 O3 O 0 1 N N N -27.791 22.418 -10.703 7.714 -1.729 0.933 O27 WPD 28 WPD O28 O4 O 0 1 N N N -25.601 22.229 -10.104 8.051 0.041 2.212 O28 WPD 29 WPD H1 H1 H 0 1 N N N -24.313 19.921 -4.583 -5.637 -3.066 0.936 H1 WPD 30 WPD H2 H2 H 0 1 N N N -23.044 21.079 -5.107 -7.165 -3.258 0.044 H2 WPD 31 WPD H3 H3 H 0 1 N N N -23.307 19.558 -6.026 -5.712 -4.141 -0.480 H3 WPD 32 WPD H4 H4 H 0 1 N N N -22.265 19.745 -3.122 -4.611 -1.993 -1.050 H4 WPD 33 WPD H5 H5 H 0 1 N N N -22.528 18.224 -4.041 -6.139 -2.185 -1.942 H5 WPD 34 WPD H6 H6 H 0 1 N N N -20.963 17.021 -8.007 -3.246 -0.352 -0.990 H6 WPD 35 WPD H7 H7 H 0 1 N N N -22.311 18.076 -7.463 -3.037 1.072 0.057 H7 WPD 36 WPD H8 H8 H 0 1 N N N -22.889 15.614 -8.143 -1.619 -0.265 1.592 H8 WPD 37 WPD H9 H9 H 0 1 N N N -22.117 15.159 -6.586 -1.828 -1.689 0.544 H9 WPD 38 WPD H10 H10 H 0 1 N N N -23.679 16.693 -5.375 -0.773 -0.462 -1.334 H10 WPD 39 WPD H11 H11 H 0 1 N N N -24.588 15.470 -6.326 -0.564 0.962 -0.287 H11 WPD 40 WPD H12 H12 H 0 1 N N N -26.011 16.854 -4.995 0.732 0.863 -1.932 H12 WPD 41 WPD H13 H13 H 0 1 N N N -28.201 17.890 -4.533 2.794 1.459 -3.137 H13 WPD 42 WPD H14 H14 H 0 1 N N N -29.167 19.559 -6.048 4.964 0.590 -2.369 H14 WPD 43 WPD H15 H15 H 0 1 N N N -29.110 20.712 -8.140 5.313 -2.000 0.210 H15 WPD 44 WPD H16 H16 H 0 1 N N N -28.054 20.047 -9.432 6.124 -1.136 -1.118 H16 WPD 45 WPD H17 H17 H 0 1 N N N -26.395 21.740 -7.817 5.361 0.122 1.555 H17 WPD 46 WPD H18 H18 H 0 1 N N N -29.051 22.959 -8.655 6.900 1.933 0.740 H18 WPD 47 WPD H19 H19 H 0 1 N N N -25.719 19.153 -8.583 3.021 -1.479 0.814 H19 WPD 48 WPD H20 H20 H 0 1 N N N -17.579 21.969 -5.268 -9.684 0.737 -1.115 H20 WPD 49 WPD H21 H21 H 0 1 N N N -19.013 22.718 -5.044 -9.494 2.083 -0.129 H21 WPD 50 WPD H22 H22 H 0 1 N N N -17.697 18.237 -7.322 -5.549 2.742 2.297 H22 WPD 51 WPD H23 H23 H 0 1 N N N -18.452 17.024 -6.532 -4.292 1.633 2.182 H23 WPD 52 WPD H24 H24 H 0 1 N N N -25.423 22.481 -11.003 8.858 -0.376 2.541 H24 WPD 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WPD O27 C26 DOUB N N 1 WPD O28 C26 SING N N 2 WPD C26 C22 SING N N 3 WPD C22 C21 SING N N 4 WPD C22 C23 SING N N 5 WPD C21 C20 SING N N 6 WPD F25 C23 SING N N 7 WPD C23 F24 SING N N 8 WPD C29 C20 DOUB Y N 9 WPD C29 C16 SING Y N 10 WPD C20 C19 SING Y N 11 WPD C12 C13 SING N N 12 WPD C12 O11 SING N N 13 WPD O15 C16 SING N N 14 WPD O15 C14 SING N N 15 WPD C13 C14 SING N N 16 WPD N09 C08 SING N N 17 WPD C16 C17 DOUB Y N 18 WPD C19 C18 DOUB Y N 19 WPD C08 N07 DOUB Y N 20 WPD C08 C10 SING Y N 21 WPD O11 C10 SING N N 22 WPD N07 C05 SING Y N 23 WPD C17 C18 SING Y N 24 WPD C10 C03 DOUB Y N 25 WPD C05 N06 SING N N 26 WPD C05 N04 DOUB Y N 27 WPD C01 C02 SING N N 28 WPD C03 N04 SING Y N 29 WPD C03 C02 SING N N 30 WPD C01 H1 SING N N 31 WPD C01 H2 SING N N 32 WPD C01 H3 SING N N 33 WPD C02 H4 SING N N 34 WPD C02 H5 SING N N 35 WPD C12 H6 SING N N 36 WPD C12 H7 SING N N 37 WPD C13 H8 SING N N 38 WPD C13 H9 SING N N 39 WPD C14 H10 SING N N 40 WPD C14 H11 SING N N 41 WPD C17 H12 SING N N 42 WPD C18 H13 SING N N 43 WPD C19 H14 SING N N 44 WPD C21 H15 SING N N 45 WPD C21 H16 SING N N 46 WPD C22 H17 SING N N 47 WPD C23 H18 SING N N 48 WPD C29 H19 SING N N 49 WPD N06 H20 SING N N 50 WPD N06 H21 SING N N 51 WPD N09 H22 SING N N 52 WPD N09 H23 SING N N 53 WPD O28 H24 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WPD SMILES ACDLabs 12.01 "c1(c(CC)nc(N)nc1N)OCCCOc2cccc(CC(C(F)F)C(=O)O)c2" WPD InChI InChI 1.03 "InChI=1S/C19H24F2N4O4/c1-2-14-15(17(22)25-19(23)24-14)29-8-4-7-28-12-6-3-5-11(9-12)10-13(16(20)21)18(26)27/h3,5-6,9,13,16H,2,4,7-8,10H2,1H3,(H,26,27)(H4,22,23,24,25)/t13-/m1/s1" WPD InChIKey InChI 1.03 QMHPAIITCHQDEY-CYBMUJFWSA-N WPD SMILES_CANONICAL CACTVS 3.385 "CCc1nc(N)nc(N)c1OCCCOc2cccc(C[C@H](C(F)F)C(O)=O)c2" WPD SMILES CACTVS 3.385 "CCc1nc(N)nc(N)c1OCCCOc2cccc(C[CH](C(F)F)C(O)=O)c2" WPD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)OCCCOc2cccc(c2)C[C@H](C(F)F)C(=O)O" WPD SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)OCCCOc2cccc(c2)CC(C(F)F)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WPD "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-[(3-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)methyl]-3,3-difluoropropanoic acid" WPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[3-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]oxypropoxy]phenyl]methyl]-3,3-bis(fluoranyl)propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WPD "Create component" 2020-11-03 RCSB WPD "Initial release" 2021-07-07 RCSB ##