data_WRH # _chem_comp.id WRH _chem_comp.name "methyl (2S)-1-[(2S,3S)-3-methyl-2-[[(3S)-3-oxidanyl-4-oxidanylidene-4-(propylamino)butanoyl]amino]pentanoyl]pyrrolidine-2-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H33 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "CA-074 methyl ester (bound)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WRH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OZA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WRH N1 N1 N 0 1 N N N N N N 13.033 -18.194 0.244 0.265 -0.210 0.001 N1 WRH 1 WRH C4 C1 C 0 1 N N S N N N 13.851 -21.183 -1.083 3.894 -1.079 -0.352 C4 WRH 2 WRH C5 C2 C 0 1 N N N N N N 14.438 -19.779 -0.918 2.730 -0.252 0.198 C5 WRH 3 WRH C6 C3 C 0 1 N N N N N N 13.344 -18.740 -0.941 1.431 -0.787 -0.349 C6 WRH 4 WRH C7 C4 C 0 1 N N S N N N 11.719 -17.663 0.580 -0.998 -0.730 -0.531 C7 WRH 5 WRH C8 C5 C 0 1 N N S N N N 11.531 -17.661 2.109 -1.475 -1.896 0.338 C8 WRH 6 WRH C10 C6 C 0 1 N N N N N N 12.762 -17.070 2.801 -1.688 -1.409 1.773 C10 WRH 7 WRH C13 C7 C 0 1 N N N N N N 9.099 -16.516 -0.070 -3.764 -1.178 -1.492 C13 WRH 8 WRH C15 C8 C 0 1 N N N N N N 8.778 -14.374 -1.263 -5.608 0.357 -1.623 C15 WRH 9 WRH C1 C9 C 0 1 N N N N N N 18.058 -22.787 0.309 6.977 2.735 -0.527 C1 WRH 10 WRH C2 C10 C 0 1 N N N N N N 16.654 -23.381 0.301 6.819 1.348 0.100 C2 WRH 11 WRH N2 N2 N 0 1 N N N N N N 10.355 -15.756 -0.180 -3.282 0.113 -0.967 N2 WRH 12 WRH C3 C11 C 0 1 N N N N N N 14.953 -22.241 -1.045 5.198 -0.471 0.096 C3 WRH 13 WRH C9 C12 C 0 1 N N N N N N 11.222 -19.072 2.610 -0.422 -3.005 0.327 C9 WRH 14 WRH C11 C13 C 0 1 N N N N N N 12.511 -16.573 4.236 -2.283 -2.541 2.612 C11 WRH 15 WRH C12 C14 C 0 1 N N N N N N 11.592 -16.233 0.047 -2.035 0.363 -0.520 C12 WRH 16 WRH O1 O1 O 0 1 N N N N N N 12.774 -18.444 -1.990 1.436 -1.736 -1.104 O1 WRH 17 WRH O2 O2 O 0 1 N N N N N N 12.588 -15.547 -0.154 -1.749 1.467 -0.109 O2 WRH 18 WRH O3 O3 O 0 1 N N N N N N 10.323 -13.845 1.807 -4.082 1.139 1.323 O3 WRH 19 WRH C14 C15 C 0 1 N N N N N N 8.116 -15.715 -0.911 -4.960 -0.815 -2.407 C14 WRH 20 WRH O4 O4 O 0 1 N N N N N N 9.910 -12.182 0.377 -5.706 2.436 0.574 O4 WRH 21 WRH C16 C16 C 0 1 N N S N N N 10.138 -14.356 -0.541 -4.386 1.082 -1.013 C16 WRH 22 WRH N N3 N 0 1 N N N N N N 15.618 -22.373 0.107 5.551 0.757 -0.335 N WRH 23 WRH C C17 C 0 1 N N N N N N 18.555 -22.396 -1.083 8.300 3.353 -0.073 C WRH 24 WRH O O5 O 0 1 N N N N N N 15.223 -22.889 -2.054 5.929 -1.086 0.843 O WRH 25 WRH C17 C18 C 0 1 N N N N N N 10.128 -13.457 0.690 -4.713 1.554 0.380 C17 WRH 26 WRH C18 C19 C 0 1 N N N N N N 9.865 -11.260 1.492 -5.966 2.847 1.943 C18 WRH 27 WRH O5 O6 O 0 1 N N N N N N 12.852 -21.398 -0.090 3.800 -2.418 0.139 O5 WRH 28 WRH H1 H1 H 0 1 N N N N N N 13.749 -18.149 0.941 0.260 0.547 0.607 H1 WRH 29 WRH H2 H2 H 0 1 N N N N N N 13.381 -21.230 -2.076 3.852 -1.088 -1.441 H2 WRH 30 WRH H3 H3 H 0 1 N N N N N N 14.972 -19.721 0.042 2.720 -0.317 1.286 H3 WRH 31 WRH H4 H4 H 0 1 N N N N N N 15.141 -19.582 -1.741 2.850 0.789 -0.104 H4 WRH 32 WRH H5 H5 H 0 1 N N N N N N 10.934 -18.285 0.126 -0.846 -1.077 -1.553 H5 WRH 33 WRH H6 H6 H 0 1 N N N N N N 10.668 -17.020 2.343 -2.414 -2.283 -0.058 H6 WRH 34 WRH H7 H7 H 0 1 N N N N N N 13.541 -17.846 2.837 -0.732 -1.104 2.198 H7 WRH 35 WRH H8 H8 H 0 1 N N N N N N 13.119 -16.220 2.201 -2.372 -0.560 1.770 H8 WRH 36 WRH H9 H9 H 0 1 N N N N N N 8.765 -16.572 0.977 -2.980 -1.669 -2.069 H9 WRH 37 WRH H10 H10 H 0 1 N N N N N N 9.220 -17.533 -0.471 -4.092 -1.821 -0.676 H10 WRH 38 WRH H11 H11 H 0 1 N N N N N N 8.924 -14.296 -2.350 -6.153 1.017 -2.297 H11 WRH 39 WRH H12 H12 H 0 1 N N N N N N 8.152 -13.538 -0.916 -6.262 -0.021 -0.837 H12 WRH 40 WRH H13 H13 H 0 1 N N N N N N 18.750 -23.531 0.731 6.971 2.645 -1.613 H13 WRH 41 WRH H14 H14 H 0 1 N N N N N N 18.054 -21.889 0.944 6.151 3.372 -0.211 H14 WRH 42 WRH H15 H15 H 0 1 N N N N N N 16.479 -23.885 1.263 7.645 0.711 -0.215 H15 WRH 43 WRH H16 H16 H 0 1 N N N N N N 16.587 -24.116 -0.515 6.824 1.438 1.187 H16 WRH 44 WRH H17 H17 H 0 1 N N N N N N 11.091 -19.053 3.702 0.517 -2.618 0.722 H17 WRH 45 WRH H18 H18 H 0 1 N N N N N N 10.298 -19.435 2.136 -0.762 -3.835 0.946 H18 WRH 46 WRH H19 H19 H 0 1 N N N N N N 12.055 -19.743 2.352 -0.270 -3.352 -0.695 H19 WRH 47 WRH H20 H20 H 0 1 N N N N N N 13.445 -16.167 4.653 -2.435 -2.194 3.634 H20 WRH 48 WRH H21 H21 H 0 1 N N N N N N 11.743 -15.786 4.222 -3.240 -2.845 2.186 H21 WRH 49 WRH H22 H22 H 0 1 N N N N N N 12.165 -17.411 4.859 -1.600 -3.390 2.614 H22 WRH 50 WRH H23 H23 H 0 1 N N N N N N 7.193 -15.537 -0.339 -4.615 -0.486 -3.387 H23 WRH 51 WRH H24 H24 H 0 1 N N N N N N 7.876 -16.267 -1.832 -5.651 -1.653 -2.499 H24 WRH 52 WRH H25 H25 H 0 1 N N N N N N 10.916 -14.015 -1.239 -4.109 1.931 -1.639 H25 WRH 53 WRH H26 H26 H 0 1 N N N N N N 15.397 -21.758 0.864 4.966 1.248 -0.932 H26 WRH 54 WRH H27 H27 H 0 1 N N N N N N 19.569 -21.976 -1.006 8.306 3.443 1.013 H27 WRH 55 WRH H28 H28 H 0 1 N N N N N N 18.575 -23.286 -1.729 9.126 2.715 -0.389 H28 WRH 56 WRH H29 H29 H 0 1 N N N N N N 17.879 -21.644 -1.516 8.413 4.340 -0.520 H29 WRH 57 WRH H30 H30 H 0 1 N N N N N N 9.681 -10.242 1.119 -6.228 1.974 2.540 H30 WRH 58 WRH H31 H31 H 0 1 N N N N N N 9.055 -11.552 2.177 -5.073 3.315 2.357 H31 WRH 59 WRH H32 H32 H 0 1 N N N N N N 10.825 -11.286 2.028 -6.790 3.559 1.958 H32 WRH 60 WRH H33 H33 H 0 1 N N N N N N 12.191 -20.718 -0.153 3.831 -2.487 1.103 H33 WRH 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WRH O C3 DOUB N N 1 WRH O1 C6 DOUB N N 2 WRH C15 C14 SING N N 3 WRH C15 C16 SING N N 4 WRH C4 C3 SING N N 5 WRH C4 C5 SING N N 6 WRH C4 O5 SING N N 7 WRH C C1 SING N N 8 WRH C3 N SING N N 9 WRH C6 C5 SING N N 10 WRH C6 N1 SING N N 11 WRH C14 C13 SING N N 12 WRH C16 N2 SING N N 13 WRH C16 C17 SING N N 14 WRH N2 C13 SING N N 15 WRH N2 C12 SING N N 16 WRH O2 C12 DOUB N N 17 WRH C12 C7 SING N N 18 WRH N C2 SING N N 19 WRH N1 C7 SING N N 20 WRH C2 C1 SING N N 21 WRH O4 C17 SING N N 22 WRH O4 C18 SING N N 23 WRH C7 C8 SING N N 24 WRH C17 O3 DOUB N N 25 WRH C8 C9 SING N N 26 WRH C8 C10 SING N N 27 WRH C10 C11 SING N N 28 WRH N1 H1 SING N N 29 WRH C4 H2 SING N N 30 WRH C5 H3 SING N N 31 WRH C5 H4 SING N N 32 WRH C7 H5 SING N N 33 WRH C8 H6 SING N N 34 WRH C10 H7 SING N N 35 WRH C10 H8 SING N N 36 WRH C13 H9 SING N N 37 WRH C13 H10 SING N N 38 WRH C15 H11 SING N N 39 WRH C15 H12 SING N N 40 WRH C1 H13 SING N N 41 WRH C1 H14 SING N N 42 WRH C2 H15 SING N N 43 WRH C2 H16 SING N N 44 WRH C9 H17 SING N N 45 WRH C9 H18 SING N N 46 WRH C9 H19 SING N N 47 WRH C11 H20 SING N N 48 WRH C11 H21 SING N N 49 WRH C11 H22 SING N N 50 WRH C14 H23 SING N N 51 WRH C14 H24 SING N N 52 WRH C16 H25 SING N N 53 WRH N H26 SING N N 54 WRH C H27 SING N N 55 WRH C H28 SING N N 56 WRH C H29 SING N N 57 WRH C18 H30 SING N N 58 WRH C18 H31 SING N N 59 WRH C18 H32 SING N N 60 WRH O5 H33 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WRH InChI InChI 1.06 "InChI=1S/C19H33N3O6/c1-5-9-20-17(25)14(23)11-15(24)21-16(12(3)6-2)18(26)22-10-7-8-13(22)19(27)28-4/h12-14,16,23H,5-11H2,1-4H3,(H,20,25)(H,21,24)/t12-,13-,14-,16-/m0/s1" WRH InChIKey InChI 1.06 BPKXMNJKFGYWKB-YXWQFLTLSA-N WRH SMILES_CANONICAL CACTVS 3.385 "CCCNC(=O)[C@@H](O)CC(=O)N[C@@H]([C@@H](C)CC)C(=O)N1CCC[C@H]1C(=O)OC" WRH SMILES CACTVS 3.385 "CCCNC(=O)[CH](O)CC(=O)N[CH]([CH](C)CC)C(=O)N1CCC[CH]1C(=O)OC" WRH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCNC(=O)[C@H](CC(=O)N[C@@H]([C@@H](C)CC)C(=O)N1CCC[C@H]1C(=O)OC)O" WRH SMILES "OpenEye OEToolkits" 2.0.7 "CCCNC(=O)C(CC(=O)NC(C(C)CC)C(=O)N1CCCC1C(=O)OC)O" # _pdbx_chem_comp_identifier.comp_id WRH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl (2~{S})-1-[(2~{S},3~{S})-3-methyl-2-[[(3~{S})-3-oxidanyl-4-oxidanylidene-4-(propylamino)butanoyl]amino]pentanoyl]pyrrolidine-2-carboxylate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WRH _pdbx_chem_comp_synonyms.name "CA-074 methyl ester (bound)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WRH "Create component" 2023-05-17 PDBE WRH "Initial release" 2023-07-05 RCSB WRH "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WRH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C5 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #