data_WRT # _chem_comp.id WRT _chem_comp.name TbXo4-OH _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H29 N5 O5 Tb" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 8 _chem_comp.pdbx_initial_date 2023-05-17 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 614.432 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WRT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P2Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WRT TB TB1 TB 3 0 N N N N N N 1.129 -24.416 16.748 1.129 -24.416 16.748 TB WRT 1 WRT C1 C1 C 0 1 N N N N N N -3.181 -26.310 14.416 -3.181 -26.310 14.416 C1 WRT 2 WRT O1 O1 O 0 1 N N N N N N -2.480 -27.075 13.430 -2.480 -27.075 13.430 O1 WRT 3 WRT C2 C2 C 0 1 N N N N N N -2.772 -24.843 14.328 -2.772 -24.843 14.328 C2 WRT 4 WRT C21 C3 C 0 1 Y N N N N N 4.917 -22.270 18.534 4.917 -22.270 18.534 C21 WRT 5 WRT C3 C4 C 0 1 N N N N N N -1.386 -24.620 14.932 -1.386 -24.620 14.932 C3 WRT 6 WRT C10 C5 C 0 1 Y N N N N N -0.234 -25.743 19.401 -0.234 -25.743 19.401 C10 WRT 7 WRT C11 C6 C 0 1 Y N N N N N 2.853 -21.350 16.938 2.853 -21.350 16.938 C11 WRT 8 WRT C01 C7 C 0 1 N N N N N N 0.243 -22.645 18.331 0.243 -22.645 18.331 C01 WRT 9 WRT C03 C8 C 0 1 N N N N N N 0.002 -21.207 17.892 0.002 -21.207 17.892 C03 WRT 10 WRT C04 C9 C 0 1 N N N N N N -2.111 -23.593 18.575 -2.111 -23.593 18.575 C04 WRT 11 WRT C05 C10 C 0 1 N N N N N N -2.204 -24.319 17.222 -2.204 -24.319 17.222 C05 WRT 12 WRT C07 C11 C 0 1 N N N N N N -1.728 -22.364 15.809 -1.728 -22.364 15.809 C07 WRT 13 WRT C08 C12 C 0 1 N N N N N N -0.457 -21.630 15.398 -0.457 -21.630 15.398 C08 WRT 14 WRT C13 C13 C 0 1 Y N N N N N -0.656 -26.812 20.183 -0.656 -26.812 20.183 C13 WRT 15 WRT C14 C14 C 0 1 Y N N N N N -0.654 -28.101 19.665 -0.654 -28.101 19.665 C14 WRT 16 WRT C15 C15 C 0 1 Y N N N N N -0.214 -28.306 18.367 -0.214 -28.306 18.367 C15 WRT 17 WRT C16 C16 C 0 1 Y N N N N N 0.211 -27.219 17.615 0.211 -27.219 17.615 C16 WRT 18 WRT C18 C17 C 0 1 N N N N N N 0.682 -27.438 16.209 0.682 -27.438 16.209 C18 WRT 19 WRT C19 C18 C 0 1 Y N N N N N 3.889 -20.495 17.297 3.889 -20.495 17.297 C19 WRT 20 WRT C20 C19 C 0 1 Y N N N N N 4.927 -20.951 18.102 4.927 -20.951 18.102 C20 WRT 21 WRT C22 C20 C 0 1 Y N N N N N 3.872 -23.099 18.142 3.872 -23.099 18.142 C22 WRT 22 WRT C24 C21 C 0 1 N N N N N N 3.834 -24.525 18.591 3.834 -24.525 18.591 C24 WRT 23 WRT C29 C22 C 0 1 N N N N N N 1.754 -20.813 16.042 1.754 -20.813 16.042 C29 WRT 24 WRT C30 C23 C 0 1 N N N N N N -0.250 -24.360 20.024 -0.250 -24.360 20.024 C30 WRT 25 WRT N02 N1 N 1 1 N N N N N N -0.798 -23.253 19.190 -0.798 -23.253 19.190 N02 WRT 26 WRT N06 N2 N 1 1 N N N N N N -1.374 -23.757 16.137 -1.374 -23.757 16.137 N06 WRT 27 WRT N09 N3 N 1 1 N N N N N N 0.316 -20.913 16.456 0.316 -20.913 16.456 N09 WRT 28 WRT N17 N4 N 1 1 Y N N N N N 0.205 -25.971 18.141 0.205 -25.971 18.141 N17 WRT 29 WRT N23 N5 N 1 1 Y N N N N N 2.883 -22.634 17.351 2.883 -22.634 17.351 N23 WRT 30 WRT O25 O2 O 0 1 N N N N N N 4.777 -24.961 19.285 4.777 -24.961 19.285 O25 WRT 31 WRT O26 O3 O 0 1 N N N N N N 2.855 -25.226 18.261 2.855 -25.226 18.261 O26 WRT 32 WRT O27 O4 O 0 1 N N N N N N 1.198 -26.482 15.595 1.198 -26.482 15.595 O27 WRT 33 WRT O28 O5 O 0 1 N N N N N N 0.530 -28.562 15.683 0.530 -28.562 15.683 O28 WRT 34 WRT H12 H1 H 0 1 N N N N N N -4.264 -26.397 14.242 -4.264 -26.397 14.242 H12 WRT 35 WRT H11 H2 H 0 1 N N N N N N -2.938 -26.696 15.417 -2.938 -26.696 15.417 H11 WRT 36 WRT H13 H3 H 0 1 N N N N N N -2.740 -27.987 13.492 -2.740 -27.986 13.492 H13 WRT 37 WRT H21 H4 H 0 1 N N N N N N -2.757 -24.537 13.271 -2.757 -24.537 13.271 H21 WRT 38 WRT H2 H5 H 0 1 N N N N N N -3.505 -24.232 14.876 -3.505 -24.232 14.876 H2 WRT 39 WRT H211 H6 H 0 0 N N N N N N 5.709 -22.646 19.165 5.709 -22.646 19.165 H211 WRT 40 WRT H3 H7 H 0 1 N N N N N N -0.969 -25.600 15.207 -0.969 -25.600 15.207 H3 WRT 41 WRT H32 H8 H 0 1 N N N N N N -0.749 -24.152 14.167 -0.749 -24.152 14.167 H32 WRT 42 WRT H011 H9 H 0 0 N N N N N N 0.331 -23.262 17.424 0.331 -23.262 17.424 H011 WRT 43 WRT H012 H10 H 0 0 N N N N N N 1.192 -22.671 18.886 1.192 -22.671 18.886 H012 WRT 44 WRT H031 H11 H 0 0 N N N N N N -1.059 -20.973 18.062 -1.059 -20.973 18.062 H031 WRT 45 WRT H032 H12 H 0 0 N N N N N N 0.627 -20.552 18.517 0.627 -20.552 18.517 H032 WRT 46 WRT H041 H13 H 0 0 N N N N N N -2.652 -22.643 18.454 -2.652 -22.643 18.455 H041 WRT 47 WRT H042 H14 H 0 0 N N N N N N -2.639 -24.226 19.303 -2.639 -24.226 19.303 H042 WRT 48 WRT H052 H15 H 0 0 N N N N N N -1.896 -25.364 17.377 -1.896 -25.364 17.377 H052 WRT 49 WRT H051 H16 H 0 0 N N N N N N -3.254 -24.291 16.894 -3.254 -24.291 16.894 H051 WRT 50 WRT H071 H17 H 0 0 N N N N N N -2.171 -21.876 16.690 -2.171 -21.876 16.690 H071 WRT 51 WRT H072 H18 H 0 0 N N N N N N -2.450 -22.349 14.980 -2.450 -22.350 14.980 H072 WRT 52 WRT H082 H19 H 0 0 N N N N N N 0.218 -22.373 14.948 0.218 -22.373 14.948 H082 WRT 53 WRT H081 H20 H 0 0 N N N N N N -0.741 -20.885 14.640 -0.741 -20.885 14.640 H081 WRT 54 WRT H131 H21 H 0 0 N N N N N N -0.987 -26.640 21.197 -0.987 -26.640 21.197 H131 WRT 55 WRT H141 H22 H 0 0 N N N N N N -0.991 -28.933 20.266 -0.991 -28.933 20.266 H141 WRT 56 WRT H151 H23 H 0 0 N N N N N N -0.202 -29.300 17.945 -0.202 -29.300 17.945 H151 WRT 57 WRT H191 H24 H 0 0 N N N N N N 3.887 -19.473 16.949 3.888 -19.472 16.949 H191 WRT 58 WRT H201 H25 H 0 0 N N N N N N 5.730 -20.288 18.387 5.730 -20.288 18.387 H201 WRT 59 WRT H291 H26 H 0 0 N N N N N N 1.965 -19.744 15.891 1.965 -19.744 15.891 H291 WRT 60 WRT H292 H27 H 0 0 N N N N N N 1.843 -21.343 15.082 1.843 -21.343 15.082 H292 WRT 61 WRT H301 H28 H 0 0 N N N N N N -0.854 -24.415 20.942 -0.854 -24.416 20.942 H301 WRT 62 WRT H302 H29 H 0 0 N N N N N N 0.787 -24.100 20.283 0.787 -24.100 20.283 H302 WRT 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WRT TB N17 SING N N 1 WRT TB O27 SING N N 2 WRT C1 O1 SING N N 3 WRT C1 C2 SING N N 4 WRT C2 C3 SING N N 5 WRT C21 C20 DOUB Y N 6 WRT C21 C22 SING Y N 7 WRT C3 N06 SING N N 8 WRT C10 C13 DOUB Y N 9 WRT C10 C30 SING N N 10 WRT C10 N17 SING Y N 11 WRT C11 C19 DOUB Y N 12 WRT C11 C29 SING N N 13 WRT C11 N23 SING Y N 14 WRT C01 C03 SING N N 15 WRT C01 N02 SING N N 16 WRT C03 N09 SING N N 17 WRT C04 C05 SING N N 18 WRT C04 N02 SING N N 19 WRT C05 N06 SING N N 20 WRT C07 C08 SING N N 21 WRT C07 N06 SING N N 22 WRT C08 N09 SING N N 23 WRT C13 C14 SING Y N 24 WRT C14 C15 DOUB Y N 25 WRT C15 C16 SING Y N 26 WRT C16 C18 SING N N 27 WRT C16 N17 DOUB Y N 28 WRT C18 O27 SING N N 29 WRT C18 O28 DOUB N N 30 WRT C19 C20 SING Y N 31 WRT C22 C24 SING N N 32 WRT C22 N23 DOUB Y N 33 WRT C24 O25 DOUB N N 34 WRT C24 O26 SING N N 35 WRT C29 N09 SING N N 36 WRT C30 N02 SING N N 37 WRT C1 H12 SING N N 38 WRT C1 H11 SING N N 39 WRT O1 H13 SING N N 40 WRT C2 H21 SING N N 41 WRT C2 H2 SING N N 42 WRT C21 H211 SING N N 43 WRT C3 H3 SING N N 44 WRT C3 H32 SING N N 45 WRT C01 H011 SING N N 46 WRT C01 H012 SING N N 47 WRT C03 H031 SING N N 48 WRT C03 H032 SING N N 49 WRT C04 H041 SING N N 50 WRT C04 H042 SING N N 51 WRT C05 H052 SING N N 52 WRT C05 H051 SING N N 53 WRT C07 H071 SING N N 54 WRT C07 H072 SING N N 55 WRT C08 H082 SING N N 56 WRT C08 H081 SING N N 57 WRT C13 H131 SING N N 58 WRT C14 H141 SING N N 59 WRT C15 H151 SING N N 60 WRT C19 H191 SING N N 61 WRT C20 H201 SING N N 62 WRT C29 H291 SING N N 63 WRT C29 H292 SING N N 64 WRT C30 H301 SING N N 65 WRT C30 H302 SING N N 66 WRT N06 TB SING N N 67 WRT N02 TB SING N N 68 WRT N23 TB SING N N 69 WRT O26 TB SING N N 70 WRT N09 TB SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WRT InChI InChI 1.06 "InChI=1S/C23H31N5O5.Tb/c29-15-3-8-26-9-11-27(16-18-4-1-6-20(24-18)22(30)31)13-14-28(12-10-26)17-19-5-2-7-21(25-19)23(32)33;/h1-2,4-7,29H,3,8-17H2,(H,30,31)(H,32,33);/q;+10/p-2" WRT InChIKey InChI 1.06 JLGGHJSBQXXDKT-UHFFFAOYSA-L WRT SMILES_CANONICAL CACTVS 3.385 "OCCCN1CCN2CCN(CC1)Cc3cccc4C(=O)O[Tb+3]5(OC(=O)c6cccc(C2)[n+]56)[n+]34" WRT SMILES CACTVS 3.385 "OCCCN1CCN2CCN(CC1)Cc3cccc4C(=O)O[Tb+3]5(OC(=O)c6cccc(C2)[n+]56)[n+]34" WRT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2[n+]3c(c1)C(=O)O[Tb+3]34567[n+]8c(cccc8C(=O)O4)C[N+]59CC[N+]6(C2)CC[N+]7(CC9)CCCO" WRT SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2[n+]3c(c1)C(=O)O[Tb+3]34567[n+]8c(cccc8C(=O)O4)C[N+]59CC[N+]6(C2)CC[N+]7(CC9)CCCO" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WRT "Create component" 2023-05-17 PDBE WRT "Modify formal charge" 2023-05-18 PDBE WRT "Initial release" 2024-06-05 RCSB #