data_WS1 # _chem_comp.id WS1 _chem_comp.name "6-(1-beta-D-Glucopyranosyloxymethyl)-N-(5'-deoxyluridine-5'-yl)picolinamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H28 N4 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-04-29 _chem_comp.pdbx_modified_date 2015-02-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 540.477 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WS1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WS1 O4 O4 O 0 1 N N N -6.035 -4.621 2.034 -6.035 -4.621 2.034 O4 WS1 1 WS1 C4 C4 C 0 1 N N N -5.740 -3.625 1.398 -5.740 -3.625 1.398 C4 WS1 2 WS1 N3 N3 N 0 1 N N N -5.435 -3.720 0.089 -5.435 -3.720 0.089 N3 WS1 3 WS1 C2 C2 C 0 1 N N N -5.109 -2.619 -0.614 -5.109 -2.619 -0.614 C2 WS1 4 WS1 O2 O2 O 0 1 N N N -4.836 -2.720 -1.794 -4.836 -2.720 -1.794 O2 WS1 5 WS1 C5 C5 C 0 1 N N N -5.722 -2.356 2.026 -5.722 -2.356 2.026 C5 WS1 6 WS1 C6 C6 C 0 1 N N N -5.392 -1.268 1.297 -5.392 -1.268 1.297 C6 WS1 7 WS1 N1 N1 N 0 1 N N N -5.083 -1.408 -0.028 -5.083 -1.408 -0.028 N1 WS1 8 WS1 "C1'" "C1'" C 0 1 N N R -4.725 -0.227 -0.818 -4.725 -0.227 -0.818 "C1'" WS1 9 WS1 "O4'" "O4'" O 0 1 N N N -3.671 0.514 -0.166 -3.671 0.514 -0.166 "O4'" WS1 10 WS1 "C2'" "C2'" C 0 1 N N R -5.916 0.754 -0.889 -5.916 0.754 -0.889 "C2'" WS1 11 WS1 "O2'" "O2'" O 0 1 N N N -6.627 0.591 -2.118 -6.627 0.591 -2.118 "O2'" WS1 12 WS1 "C3'" "C3'" C 0 1 N N S -5.258 2.150 -0.822 -5.258 2.150 -0.822 "C3'" WS1 13 WS1 "O3'" "O3'" O 0 1 N N N -5.540 2.894 -2.010 -5.540 2.894 -2.010 "O3'" WS1 14 WS1 "C4'" "C4'" C 0 1 N N R -3.744 1.846 -0.720 -3.744 1.846 -0.720 "C4'" WS1 15 WS1 "C5'" "C5'" C 0 1 N N N -3.061 2.849 0.211 -3.061 2.849 0.211 "C5'" WS1 16 WS1 N11 N11 N 0 1 N N N -1.614 2.619 0.201 -1.614 2.619 0.201 N11 WS1 17 WS1 C12 C12 C 0 1 N N N -0.804 3.390 0.953 -0.804 3.390 0.953 C12 WS1 18 WS1 O13 O13 O 0 1 N N N -1.273 4.276 1.640 -1.273 4.276 1.640 O13 WS1 19 WS1 C14 C14 C 0 1 Y N N 0.660 3.157 0.942 0.660 3.157 0.942 C14 WS1 20 WS1 C15 C15 C 0 1 Y N N 1.492 3.957 1.722 1.492 3.957 1.722 C15 WS1 21 WS1 C16 C16 C 0 1 Y N N 2.859 3.727 1.702 2.859 3.727 1.702 C16 WS1 22 WS1 C17 C17 C 0 1 Y N N 3.345 2.704 0.903 3.345 2.704 0.903 C17 WS1 23 WS1 C18 C18 C 0 1 Y N N 2.459 1.947 0.153 2.459 1.947 0.153 C18 WS1 24 WS1 N19 N19 N 0 1 Y N N 1.166 2.184 0.195 1.166 2.184 0.195 N19 WS1 25 WS1 C20 C20 C 0 1 N N N 2.983 0.834 -0.717 2.983 0.834 -0.717 C20 WS1 26 WS1 O21 O21 O 0 1 N N N 4.405 0.764 -0.595 4.405 0.764 -0.595 O21 WS1 27 WS1 H1 H1 H 0 1 N N N -5.451 -4.612 -0.362 -5.449 -4.585 -0.349 H1 WS1 28 WS1 H2 H2 H 0 1 N N N -5.969 -2.260 3.073 -5.969 -2.259 3.073 H2 WS1 29 WS1 H3 H3 H 0 1 N N N -5.372 -0.292 1.758 -5.373 -0.291 1.759 H3 WS1 30 WS1 H4 H4 H 0 1 N N N -4.428 -0.518 -1.836 -4.417 -0.522 -1.821 H4 WS1 31 WS1 H5 H5 H 0 1 N N N -6.573 0.608 -0.019 -6.584 0.606 -0.040 H5 WS1 32 WS1 H6 H6 H 0 1 N N N -7.025 -0.271 -2.142 -7.386 1.183 -2.215 H6 WS1 33 WS1 H7 H7 H 0 1 N N N -5.596 2.682 0.080 -5.599 2.692 0.059 H7 WS1 34 WS1 H8 H8 H 0 1 N N N -5.129 3.749 -1.954 -6.481 3.060 -2.155 H8 WS1 35 WS1 H9 H9 H 0 1 N N N -3.287 1.888 -1.720 -3.284 1.873 -1.708 H9 WS1 36 WS1 H10 H10 H 0 1 N N N -3.272 3.872 -0.134 -3.270 3.863 -0.130 H10 WS1 37 WS1 H11 H11 H 0 1 N N N -3.445 2.721 1.234 -3.442 2.722 1.225 H11 WS1 38 WS1 H12 H12 H 0 1 N N N -1.227 1.890 -0.364 -1.240 1.912 -0.347 H12 WS1 39 WS1 H13 H13 H 0 1 N N N 1.078 4.745 2.334 1.079 4.745 2.333 H13 WS1 40 WS1 H14 H14 H 0 1 N N N 3.530 4.331 2.295 3.529 4.330 2.295 H14 WS1 41 WS1 H15 H15 H 0 1 N N N 4.405 2.499 0.865 4.405 2.499 0.865 H15 WS1 42 WS1 H16 H16 H 0 1 N N N 2.714 1.030 -1.765 2.544 -0.112 -0.401 H16 WS1 43 WS1 H17 H17 H 0 1 N N N 2.540 -0.121 -0.397 2.717 1.029 -1.756 H17 WS1 44 WS1 C22 C22 C 0 1 N N R 5.006 -0.265 -1.385 5.006 -0.265 -1.385 C22 WS1 45 WS1 C23 C23 C 0 1 N N R 6.530 -0.168 -1.275 6.530 -0.168 -1.275 C23 WS1 46 WS1 C24 C24 C 0 1 N N R 6.944 -0.398 0.182 6.944 -0.398 0.182 C24 WS1 47 WS1 C25 C25 C 0 1 N N S 6.413 -1.759 0.643 6.413 -1.759 0.643 C25 WS1 48 WS1 C26 C26 C 0 1 N N S 4.894 -1.794 0.459 4.894 -1.794 0.459 C26 WS1 49 WS1 O27 O27 O 0 1 N N N 4.575 -1.542 -0.911 4.575 -1.542 -0.911 O27 WS1 50 WS1 C28 C28 C 0 1 N N N 4.362 -3.171 0.862 4.362 -3.171 0.862 C28 WS1 51 WS1 O29 O29 O 0 1 N N N 2.935 -3.167 0.802 2.935 -3.167 0.802 O29 WS1 52 WS1 O30 O30 O 0 1 N N N 7.012 -2.795 -0.137 7.012 -2.795 -0.137 O30 WS1 53 WS1 O31 O31 O 0 1 N N N 8.370 -0.383 0.281 8.370 -0.383 0.281 O31 WS1 54 WS1 O32 O32 O 0 1 N N N 7.132 -1.163 -2.106 7.132 -1.163 -2.106 O32 WS1 55 WS1 H18 H18 H 0 1 N N N 4.722 -0.141 -2.441 4.708 -0.144 -2.426 H18 WS1 56 WS1 H19 H19 H 0 1 N N N 6.850 0.838 -1.585 6.856 0.821 -1.595 H19 WS1 57 WS1 H20 H20 H 0 1 N N N 6.505 0.391 0.810 6.525 0.389 0.809 H20 WS1 58 WS1 H21 H21 H 0 1 N N N 6.649 -1.894 1.709 6.656 -1.907 1.696 H21 WS1 59 WS1 H22 H22 H 0 1 N N N 4.437 -1.030 1.106 4.434 -1.029 1.086 H22 WS1 60 WS1 H23 H23 H 0 1 N N N 4.756 -3.932 0.172 4.753 -3.925 0.179 H23 WS1 61 WS1 H24 H24 H 0 1 N N N 4.685 -3.403 1.888 4.682 -3.401 1.878 H24 WS1 62 WS1 H25 H25 H 0 1 N N N 2.605 -4.022 1.052 2.529 -4.010 1.045 H25 WS1 63 WS1 H26 H26 H 0 1 N N N 6.682 -3.639 0.149 7.977 -2.829 -0.071 H26 WS1 64 WS1 H27 H27 H 0 1 N N N 8.627 -0.526 1.184 8.775 0.448 -0.002 H27 WS1 65 WS1 H28 H28 H 0 1 N N N 8.078 -1.103 -2.038 6.909 -1.081 -3.043 H28 WS1 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WS1 "O2'" "C2'" SING N N 1 WS1 "O3'" "C3'" SING N N 2 WS1 "C3'" "C2'" SING N N 3 WS1 "C3'" "C4'" SING N N 4 WS1 "C2'" "C1'" SING N N 5 WS1 "C4'" "C5'" SING N N 6 WS1 "C4'" "O4'" SING N N 7 WS1 "C5'" N11 SING N N 8 WS1 O13 C12 DOUB N N 9 WS1 "O4'" "C1'" SING N N 10 WS1 "C1'" N1 SING N N 11 WS1 C12 N11 SING N N 12 WS1 C12 C14 SING N N 13 WS1 O2 C2 DOUB N N 14 WS1 O21 C20 SING N N 15 WS1 N1 C2 SING N N 16 WS1 N1 C6 SING N N 17 WS1 C2 N3 SING N N 18 WS1 N19 C14 DOUB Y N 19 WS1 N19 C18 SING Y N 20 WS1 C14 C15 SING Y N 21 WS1 C6 C5 DOUB N N 22 WS1 C20 C18 SING N N 23 WS1 C18 C17 DOUB Y N 24 WS1 N3 C4 SING N N 25 WS1 C15 C16 DOUB Y N 26 WS1 C5 C4 SING N N 27 WS1 C4 O4 DOUB N N 28 WS1 C17 C16 SING Y N 29 WS1 N3 H1 SING N N 30 WS1 C5 H2 SING N N 31 WS1 C6 H3 SING N N 32 WS1 "C1'" H4 SING N N 33 WS1 "C2'" H5 SING N N 34 WS1 "O2'" H6 SING N N 35 WS1 "C3'" H7 SING N N 36 WS1 "O3'" H8 SING N N 37 WS1 "C4'" H9 SING N N 38 WS1 "C5'" H10 SING N N 39 WS1 "C5'" H11 SING N N 40 WS1 N11 H12 SING N N 41 WS1 C15 H13 SING N N 42 WS1 C16 H14 SING N N 43 WS1 C17 H15 SING N N 44 WS1 C20 H16 SING N N 45 WS1 C20 H17 SING N N 46 WS1 O21 C22 SING N N 47 WS1 C22 C23 SING N N 48 WS1 C23 C24 SING N N 49 WS1 C24 C25 SING N N 50 WS1 C25 C26 SING N N 51 WS1 C26 O27 SING N N 52 WS1 O27 C22 SING N N 53 WS1 C26 C28 SING N N 54 WS1 C28 O29 SING N N 55 WS1 C25 O30 SING N N 56 WS1 C24 O31 SING N N 57 WS1 C23 O32 SING N N 58 WS1 C22 H18 SING N N 59 WS1 C23 H19 SING N N 60 WS1 C24 H20 SING N N 61 WS1 C25 H21 SING N N 62 WS1 C26 H22 SING N N 63 WS1 C28 H23 SING N N 64 WS1 C28 H24 SING N N 65 WS1 O29 H25 SING N N 66 WS1 O30 H26 SING N N 67 WS1 O31 H27 SING N N 68 WS1 O32 H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WS1 SMILES ACDLabs 12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)CNC(=O)c3nc(ccc3)COC4OC(C(O)C(O)C4O)CO" WS1 InChI InChI 1.03 "InChI=1S/C22H28N4O12/c27-7-12-15(30)16(31)18(33)21(38-12)36-8-9-2-1-3-10(24-9)19(34)23-6-11-14(29)17(32)20(37-11)26-5-4-13(28)25-22(26)35/h1-5,11-12,14-18,20-21,27,29-33H,6-8H2,(H,23,34)(H,25,28,35)/t11-,12+,14-,15-,16-,17-,18-,20-,21-/m1/s1" WS1 InChIKey InChI 1.03 KPOTWZYLDCHCIG-MJELCBSSSA-N WS1 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1O[C@@H](OCc2cccc(n2)C(=O)NC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H](O)[C@H](O)[C@@H]1O" WS1 SMILES CACTVS 3.385 "OC[CH]1O[CH](OCc2cccc(n2)C(=O)NC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH](O)[CH](O)[CH]1O" WS1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO[C@H]4[C@@H]([C@@H]([C@@H]([C@@H](O4)CO)O)O)O" WS1 SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(nc(c1)C(=O)NCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)COC4C(C(C(C(O4)CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WS1 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-[({6-[(alpha-L-talopyranosyloxy)methyl]pyridin-2-yl}carbonyl)amino]uridine" WS1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-6-[[(2R,3R,4R,5S,6S)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WS1 "Create component" 2013-04-29 RCSB WS1 "Modify name" 2013-04-29 RCSB WS1 "Modify formula" 2013-04-29 RCSB WS1 "Modify synonyms" 2013-04-29 RCSB WS1 "Modify model coordinates code" 2013-04-29 RCSB WS1 "Other modification" 2013-08-16 RCSB WS1 "Other modification" 2013-08-29 RCSB WS1 "Initial release" 2013-09-11 RCSB WS1 "Other modification" 2015-02-25 RCSB #