data_WS5 # _chem_comp.id WS5 _chem_comp.name "(2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-(pyridin-3-ylmethylamino)pentan-2-yl]piperidine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 F N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-17 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.617 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WS5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P3D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WS5 N1 N1 N 0 1 N N N N N N 1.634 -2.993 12.642 2.994 2.353 0.313 N1 WS5 1 WS5 N3 N2 N 0 1 N N N N N N 1.737 -7.610 16.902 -3.905 0.546 0.280 N3 WS5 2 WS5 C4 C1 C 0 1 Y N N N N N -0.427 -5.193 9.910 3.720 -1.500 -0.795 C4 WS5 3 WS5 C5 C2 C 0 1 N N N N N N 0.078 -4.704 11.237 3.489 -0.022 -0.972 C5 WS5 4 WS5 C6 C3 C 0 1 N N S N N N 2.680 -3.680 13.341 1.650 2.862 0.010 C6 WS5 5 WS5 C7 C4 C 0 1 N N N N N N 2.408 -4.455 14.581 0.685 1.708 -0.097 C7 WS5 6 WS5 C8 C5 C 0 1 N N S N N N 0.854 -5.527 15.963 -1.439 0.645 0.446 C8 WS5 7 WS5 C10 C6 C 0 1 N N N N N N -1.195 -4.162 16.828 -2.104 -1.665 1.128 C10 WS5 8 WS5 C13 C7 C 0 1 N N N N N N 1.255 -6.996 15.814 -2.814 1.181 0.752 C13 WS5 9 WS5 C15 C8 C 0 1 Y N N N N N 3.250 -9.548 16.621 -6.273 0.235 -0.148 C15 WS5 10 WS5 C17 C9 C 0 1 Y N N N N N 5.718 -10.478 15.955 -8.142 -1.351 -1.328 C17 WS5 11 WS5 C20 C10 C 0 1 N N N N N N 3.751 -2.625 13.662 1.696 3.617 -1.321 C20 WS5 12 WS5 C21 C11 C 0 1 N N N N N N 3.150 -1.447 14.466 2.777 4.699 -1.252 C21 WS5 13 WS5 C22 C12 C 0 1 N N N N N N 1.996 -0.832 13.693 4.141 4.045 -1.019 C22 WS5 14 WS5 C24 C13 C 0 1 Y N N N N N -1.396 -4.504 9.202 2.648 -2.373 -0.806 C24 WS5 15 WS5 C1 C14 C 0 1 Y N N N N N -1.258 -6.072 7.450 4.145 -4.214 -0.470 C1 WS5 16 WS5 C11 C15 C 0 1 N N N N N N -2.719 -4.187 16.904 -1.890 -2.207 -0.287 C11 WS5 17 WS5 C12 C16 C 0 1 N N N N N N -0.628 -3.912 18.203 -1.863 -2.783 2.144 C12 WS5 18 WS5 C14 C17 C 0 1 N N N N N N 1.862 -9.060 16.948 -5.233 1.136 0.467 C14 WS5 19 WS5 C16 C18 C 0 1 Y N N N N N 3.497 -10.271 15.466 -6.641 0.392 -1.471 C16 WS5 20 WS5 C18 C19 C 0 1 Y N N N N N 5.563 -9.772 17.110 -7.821 -1.570 -0.002 C18 WS5 21 WS5 C19 C20 C 0 1 Y N N N N N 4.316 -9.306 17.452 -6.869 -0.765 0.605 C19 WS5 22 WS5 C2 C21 C 0 1 Y N N N N N -0.292 -6.770 8.096 5.218 -3.339 -0.464 C2 WS5 23 WS5 C23 C22 C 0 1 N N N N N N 0.976 -1.904 13.361 4.122 3.295 0.316 C23 WS5 24 WS5 C25 C23 C 0 1 Y N N N N N -1.849 -4.962 7.971 2.859 -3.729 -0.644 C25 WS5 25 WS5 C3 C24 C 0 1 Y N N N N N 0.112 -6.328 9.344 5.005 -1.983 -0.626 C3 WS5 26 WS5 C9 C25 C 0 1 N N N N N N -0.641 -5.470 16.297 -1.124 -0.519 1.388 C9 WS5 27 WS5 F1 F1 F 0 1 N N N N N N -1.665 -6.523 6.240 4.352 -5.539 -0.311 F1 WS5 28 WS5 N2 N3 N 0 1 N N N N N N 1.141 -4.718 14.802 -0.447 1.707 0.634 N2 WS5 29 WS5 N4 N4 N 0 1 Y N N N N N 4.706 -10.749 15.117 -7.550 -0.393 -2.015 N4 WS5 30 WS5 O1 O1 O 0 1 N N N N N N 2.481 -4.030 10.564 4.435 0.726 1.408 O1 WS5 31 WS5 O2 O2 O 0 1 N N N N N N 1.125 -7.590 14.732 -2.938 2.184 1.422 O2 WS5 32 WS5 O3 O3 O 0 1 N N N N N N 3.295 -4.931 15.288 0.929 0.781 -0.840 O3 WS5 33 WS5 O4 O4 O 0 1 N N N N N N 0.730 -2.274 10.505 2.002 0.323 1.216 O4 WS5 34 WS5 S1 S1 S 0 1 N N N N N N 1.318 -3.416 11.141 3.234 0.749 0.650 S1 WS5 35 WS5 H17 H1 H 0 1 N N N N N N 2.015 -7.066 17.693 -3.811 -0.301 -0.183 H17 WS5 36 WS5 H4 H2 H 0 1 N N N N N N -0.778 -4.313 11.806 4.358 0.427 -1.454 H4 WS5 37 WS5 H3 H3 H 0 1 N N N N N N 0.514 -5.560 11.773 2.607 0.137 -1.592 H3 WS5 38 WS5 H5 H4 H 0 1 N N N N N N 3.144 -4.378 12.629 1.328 3.537 0.803 H5 WS5 39 WS5 H7 H5 H 0 1 N N N N N N 1.403 -5.117 16.824 -1.406 0.296 -0.586 H7 WS5 40 WS5 H10 H6 H 0 1 N N N N N N -0.886 -3.346 16.159 -3.126 -1.299 1.226 H10 WS5 41 WS5 H21 H7 H 0 1 N N N N N N 6.704 -10.837 15.702 -8.881 -1.974 -1.809 H21 WS5 42 WS5 H25 H8 H 0 1 N N N N N N 4.550 -3.094 14.255 1.930 2.921 -2.127 H25 WS5 43 WS5 H24 H9 H 0 1 N N N N N N 4.170 -2.240 12.720 0.728 4.082 -1.510 H24 WS5 44 WS5 H27 H10 H 0 1 N N N N N N 2.785 -1.816 15.436 2.795 5.254 -2.189 H27 WS5 45 WS5 H26 H11 H 0 1 N N N N N N 3.926 -0.685 14.632 2.556 5.380 -0.430 H26 WS5 46 WS5 H29 H12 H 0 1 N N N N N N 2.376 -0.387 12.761 4.352 3.345 -1.827 H29 WS5 47 WS5 H28 H13 H 0 1 N N N N N N 1.520 -0.051 14.305 4.913 4.814 -0.994 H28 WS5 48 WS5 H32 H14 H 0 1 N N N N N N -1.807 -3.594 9.614 1.646 -1.995 -0.942 H32 WS5 49 WS5 H13 H15 H 0 1 N N N N N N -3.083 -3.224 17.292 -0.894 -2.643 -0.362 H13 WS5 50 WS5 H12 H16 H 0 1 N N N N N N -3.133 -4.357 15.899 -2.638 -2.971 -0.500 H12 WS5 51 WS5 H11 H17 H 0 1 N N N N N N -3.039 -4.998 17.575 -1.986 -1.394 -1.006 H11 WS5 52 WS5 H16 H18 H 0 1 N N N N N N -1.024 -2.965 18.597 -0.841 -3.149 2.046 H16 WS5 53 WS5 H14 H19 H 0 1 N N N N N N -0.915 -4.736 18.873 -2.015 -2.396 3.152 H14 WS5 54 WS5 H15 H20 H 0 1 N N N N N N 0.469 -3.853 18.142 -2.561 -3.599 1.959 H15 WS5 55 WS5 H19 H21 H 0 1 N N N N N N 1.159 -9.495 16.222 -5.434 1.248 1.533 H19 WS5 56 WS5 H18 H22 H 0 1 N N N N N N 1.601 -9.401 17.961 -5.268 2.113 -0.015 H18 WS5 57 WS5 H20 H23 H 0 1 N N N N N N 2.667 -10.464 14.803 -6.179 1.166 -2.065 H20 WS5 58 WS5 H22 H24 H 0 1 N N N N N N 6.411 -9.581 17.750 -8.306 -2.359 0.554 H22 WS5 59 WS5 H23 H25 H 0 1 N N N N N N 4.175 -8.753 18.369 -6.598 -0.914 1.640 H23 WS5 60 WS5 H1 H26 H 0 1 N N N N N N 0.151 -7.648 7.649 6.221 -3.716 -0.328 H1 WS5 61 WS5 H30 H27 H 0 1 N N N N N N 0.183 -1.474 12.731 4.002 4.005 1.133 H30 WS5 62 WS5 H31 H28 H 0 1 N N N N N N 0.535 -2.292 14.291 5.056 2.746 0.440 H31 WS5 63 WS5 H33 H29 H 0 1 N N N N N N -2.644 -4.454 7.445 2.022 -4.411 -0.653 H33 WS5 64 WS5 H2 H30 H 0 1 N N N N N N 0.864 -6.883 9.885 5.842 -1.301 -0.622 H2 WS5 65 WS5 H8 H31 H 0 1 N N N N N N -1.193 -5.711 15.376 -0.106 -0.864 1.211 H8 WS5 66 WS5 H9 H32 H 0 1 N N N N N N -0.838 -6.242 17.055 -1.221 -0.186 2.421 H9 WS5 67 WS5 H6 H33 H 0 1 N N N N N N 0.417 -4.378 14.202 -0.606 2.409 1.283 H6 WS5 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WS5 F1 C1 SING N N 1 WS5 C1 C25 DOUB Y N 2 WS5 C1 C2 SING Y N 3 WS5 C25 C24 SING Y N 4 WS5 C2 C3 DOUB Y N 5 WS5 C24 C4 DOUB Y N 6 WS5 C3 C4 SING Y N 7 WS5 C4 C5 SING N N 8 WS5 O4 S1 DOUB N N 9 WS5 O1 S1 DOUB N N 10 WS5 S1 C5 SING N N 11 WS5 S1 N1 SING N N 12 WS5 N1 C6 SING N N 13 WS5 N1 C23 SING N N 14 WS5 C6 C20 SING N N 15 WS5 C6 C7 SING N N 16 WS5 C23 C22 SING N N 17 WS5 C20 C21 SING N N 18 WS5 C22 C21 SING N N 19 WS5 C7 N2 SING N N 20 WS5 C7 O3 DOUB N N 21 WS5 O2 C13 DOUB N N 22 WS5 N2 C8 SING N N 23 WS5 N4 C16 DOUB Y N 24 WS5 N4 C17 SING Y N 25 WS5 C16 C15 SING Y N 26 WS5 C13 C8 SING N N 27 WS5 C13 N3 SING N N 28 WS5 C17 C18 DOUB Y N 29 WS5 C8 C9 SING N N 30 WS5 C9 C10 SING N N 31 WS5 C15 C14 SING N N 32 WS5 C15 C19 DOUB Y N 33 WS5 C10 C11 SING N N 34 WS5 C10 C12 SING N N 35 WS5 N3 C14 SING N N 36 WS5 C18 C19 SING Y N 37 WS5 N3 H17 SING N N 38 WS5 C5 H4 SING N N 39 WS5 C5 H3 SING N N 40 WS5 C6 H5 SING N N 41 WS5 C8 H7 SING N N 42 WS5 C10 H10 SING N N 43 WS5 C17 H21 SING N N 44 WS5 C20 H25 SING N N 45 WS5 C20 H24 SING N N 46 WS5 C21 H27 SING N N 47 WS5 C21 H26 SING N N 48 WS5 C22 H29 SING N N 49 WS5 C22 H28 SING N N 50 WS5 C24 H32 SING N N 51 WS5 C11 H13 SING N N 52 WS5 C11 H12 SING N N 53 WS5 C11 H11 SING N N 54 WS5 C12 H16 SING N N 55 WS5 C12 H14 SING N N 56 WS5 C12 H15 SING N N 57 WS5 C14 H19 SING N N 58 WS5 C14 H18 SING N N 59 WS5 C16 H20 SING N N 60 WS5 C18 H22 SING N N 61 WS5 C19 H23 SING N N 62 WS5 C2 H1 SING N N 63 WS5 C23 H30 SING N N 64 WS5 C23 H31 SING N N 65 WS5 C25 H33 SING N N 66 WS5 C3 H2 SING N N 67 WS5 C9 H8 SING N N 68 WS5 C9 H9 SING N N 69 WS5 N2 H6 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WS5 InChI InChI 1.06 "InChI=1S/C25H33FN4O4S/c1-18(2)14-22(24(31)28-16-20-6-5-12-27-15-20)29-25(32)23-7-3-4-13-30(23)35(33,34)17-19-8-10-21(26)11-9-19/h5-6,8-12,15,18,22-23H,3-4,7,13-14,16-17H2,1-2H3,(H,28,31)(H,29,32)/t22-,23-/m0/s1" WS5 InChIKey InChI 1.06 SOAYYWKJGVKGEN-GOTSBHOMSA-N WS5 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H]1CCCCN1[S](=O)(=O)Cc2ccc(F)cc2)C(=O)NCc3cccnc3" WS5 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH]1CCCCN1[S](=O)(=O)Cc2ccc(F)cc2)C(=O)NCc3cccnc3" WS5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)NCc1cccnc1)NC(=O)[C@@H]2CCCCN2S(=O)(=O)Cc3ccc(cc3)F" WS5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NCc1cccnc1)NC(=O)C2CCCCN2S(=O)(=O)Cc3ccc(cc3)F" # _pdbx_chem_comp_identifier.comp_id WS5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-1-[(4-fluorophenyl)methylsulfonyl]-~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-(pyridin-3-ylmethylamino)pentan-2-yl]piperidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WS5 "Create component" 2023-05-17 PDBE WS5 "Initial release" 2024-06-12 RCSB #