data_WT5 # _chem_comp.id WT5 _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[6-({[(5M)-3-methyl-5-(1H-pyrrol-2-yl)phenyl]amino}methyl)pyridin-2-yl]methyl}piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-18 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WT5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EQX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WT5 N1 N1 N 0 1 N N N -38.334 -30.887 -67.673 -3.845 -0.362 0.555 N1 WT5 1 WT5 N3 N2 N 0 1 N N N -44.309 -33.482 -65.213 2.248 0.918 0.251 N3 WT5 2 WT5 C4 C1 C 0 1 N N N -38.685 -32.304 -67.876 -4.663 0.858 0.580 C4 WT5 3 WT5 C5 C2 C 0 1 N N R -36.911 -30.785 -67.365 -4.684 -1.565 0.634 C5 WT5 4 WT5 C6 C3 C 0 1 N N N -36.558 -29.309 -67.260 -3.792 -2.808 0.650 C6 WT5 5 WT5 C7 C4 C 0 1 N N N -38.964 -30.454 -66.698 -2.844 -0.346 1.630 C7 WT5 6 WT5 C8 C5 C 0 1 Y N N -40.477 -30.818 -66.714 -1.918 0.826 1.437 C8 WT5 7 WT5 C10 C6 C 0 1 N N N -42.830 -33.403 -65.298 1.136 1.523 -0.487 C10 WT5 8 WT5 C13 C7 C 0 1 Y N N -44.916 -30.946 -62.507 4.786 0.676 -2.401 C13 WT5 9 WT5 C15 C8 C 0 1 Y N N -46.293 -30.917 -62.524 5.841 0.112 -1.713 C15 WT5 10 WT5 C17 C9 C 0 1 Y N N -48.571 -31.545 -63.292 6.835 -0.801 0.381 C17 WT5 11 WT5 C20 C10 C 0 1 Y N N -50.687 -31.739 -63.678 8.054 -1.681 2.015 C20 WT5 12 WT5 C21 C11 C 0 1 Y N N -46.418 -32.526 -64.288 4.506 0.077 0.298 C21 WT5 13 WT5 C22 C12 C 0 1 Y N N -43.132 -31.414 -66.887 -0.226 2.924 1.068 C22 WT5 14 WT5 C24 C13 C 0 1 Y N N -41.307 -30.045 -67.533 -2.166 2.011 2.105 C24 WT5 15 WT5 C1 C14 C 0 1 N N R -35.980 -31.496 -68.385 -5.615 -1.620 -0.579 C1 WT5 16 WT5 C11 C15 C 0 1 Y N N -45.024 -32.592 -64.279 3.454 0.648 -0.400 C11 WT5 17 WT5 C12 C16 C 0 1 Y N N -44.276 -31.793 -63.387 3.597 0.947 -1.751 C12 WT5 18 WT5 C14 C17 C 0 1 N N N -44.158 -30.053 -61.513 4.933 1.003 -3.865 C14 WT5 19 WT5 C16 C18 C 0 1 Y N N -47.044 -31.672 -63.400 5.708 -0.191 -0.357 C16 WT5 20 WT5 C18 C19 C 0 1 Y N N -49.233 -30.882 -62.240 8.057 -1.113 -0.136 C18 WT5 21 WT5 C19 C20 C 0 1 Y N N -50.577 -31.002 -62.496 8.821 -1.668 0.904 C19 WT5 22 WT5 C2 C21 C 0 1 N N R -36.346 -32.908 -68.507 -6.491 -0.364 -0.602 C2 WT5 23 WT5 C23 C22 C 0 1 Y N N -42.665 -30.329 -67.636 -1.308 3.083 1.921 C23 WT5 24 WT5 C3 C23 C 0 1 N N S -37.751 -33.000 -68.882 -5.593 0.875 -0.635 C3 WT5 25 WT5 C9 C24 C 0 1 Y N N -42.260 -32.184 -66.090 -0.039 1.709 0.438 C9 WT5 26 WT5 N2 N3 N 0 1 Y N N -40.964 -31.849 -66.009 -0.876 0.709 0.637 N2 WT5 27 WT5 N4 N4 N 0 1 Y N N -49.470 -32.062 -64.112 6.839 -1.146 1.708 N4 WT5 28 WT5 O1 O1 O 0 1 N N N -34.701 -31.501 -67.772 -6.445 -2.780 -0.491 O1 WT5 29 WT5 O2 O2 O 0 1 N N N -35.492 -33.491 -69.575 -7.323 -0.384 -1.763 O2 WT5 30 WT5 O3 O3 O 0 1 N N N -38.241 -34.272 -69.297 -6.402 2.052 -0.600 O3 WT5 31 WT5 O4 O4 O 0 1 N N N -36.916 -28.776 -68.481 -3.072 -2.892 -0.581 O4 WT5 32 WT5 H2 H2 H 0 1 N N N -44.665 -33.292 -66.128 2.147 0.706 1.192 H2 WT5 33 WT5 H3 H3 H 0 1 N N N -39.717 -32.362 -68.253 -5.258 0.878 1.493 H3 WT5 34 WT5 H4 H4 H 0 1 N N N -38.617 -32.827 -66.911 -4.012 1.732 0.551 H4 WT5 35 WT5 H5 H5 H 0 1 N N N -36.732 -31.244 -66.381 -5.279 -1.533 1.547 H5 WT5 36 WT5 H6 H6 H 0 1 N N N -35.480 -29.180 -67.081 -3.088 -2.739 1.479 H6 WT5 37 WT5 H7 H7 H 0 1 N N N -37.125 -28.831 -66.447 -4.410 -3.697 0.771 H7 WT5 38 WT5 H8 H8 H 0 1 N N N -38.517 -30.871 -65.784 -3.346 -0.258 2.593 H8 WT5 39 WT5 H9 H9 H 0 1 N N N -38.871 -29.358 -66.685 -2.269 -1.272 1.604 H9 WT5 40 WT5 H10 H10 H 0 1 N N N -42.470 -34.321 -65.786 1.445 2.491 -0.881 H10 WT5 41 WT5 H11 H11 H 0 1 N N N -42.435 -33.354 -64.273 0.850 0.869 -1.311 H11 WT5 42 WT5 H12 H12 H 0 1 N N N -46.806 -30.276 -61.822 6.770 -0.094 -2.224 H12 WT5 43 WT5 H13 H13 H 0 1 N N N -51.614 -32.005 -64.164 8.355 -2.048 2.985 H13 WT5 44 WT5 H14 H14 H 0 1 N N N -46.995 -33.129 -64.974 4.398 -0.156 1.347 H14 WT5 45 WT5 H15 H15 H 0 1 N N N -44.181 -31.667 -66.920 0.463 3.739 0.901 H15 WT5 46 WT5 H16 H16 H 0 1 N N N -40.889 -29.220 -68.091 -3.019 2.099 2.762 H16 WT5 47 WT5 H17 H17 H 0 1 N N N -35.990 -30.977 -69.355 -5.020 -1.666 -1.492 H17 WT5 48 WT5 H18 H18 H 0 1 N N N -43.197 -31.845 -63.394 2.776 1.393 -2.293 H18 WT5 49 WT5 H19 H19 H 0 1 N N N -43.948 -29.079 -61.980 4.626 0.144 -4.462 H19 WT5 50 WT5 H20 H20 H 0 1 N N N -44.772 -29.903 -60.613 4.305 1.859 -4.111 H20 WT5 51 WT5 H21 H21 H 0 1 N N N -43.211 -30.537 -61.234 5.974 1.243 -4.081 H21 WT5 52 WT5 H22 H22 H 0 1 N N N -48.775 -30.380 -61.400 8.378 -0.961 -1.156 H22 WT5 53 WT5 H23 H23 H 0 1 N N N -51.387 -30.606 -61.902 9.837 -2.025 0.826 H23 WT5 54 WT5 H24 H24 H 0 1 N N N -36.168 -33.432 -67.556 -7.114 -0.339 0.292 H24 WT5 55 WT5 H25 H25 H 0 1 N N N -43.323 -29.743 -68.261 -1.477 4.021 2.430 H25 WT5 56 WT5 H26 H26 H 0 1 N N N -37.830 -32.370 -69.780 -4.998 0.869 -1.549 H26 WT5 57 WT5 H27 H27 H 0 1 N N N -49.269 -32.607 -64.926 6.097 -1.035 2.323 H27 WT5 58 WT5 H28 H28 H 0 1 N N N -34.399 -30.607 -67.661 -7.061 -2.879 -1.230 H28 WT5 59 WT5 H29 H29 H 0 1 N N N -34.579 -33.426 -69.321 -7.907 0.383 -1.842 H29 WT5 60 WT5 H30 H30 H 0 1 N N N -39.163 -34.201 -69.513 -5.898 2.877 -0.618 H30 WT5 61 WT5 H31 H31 H 0 1 N N N -36.723 -27.846 -68.490 -2.485 -3.659 -0.642 H31 WT5 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WT5 O2 C2 SING N N 1 WT5 O3 C3 SING N N 2 WT5 C3 C2 SING N N 3 WT5 C3 C4 SING N N 4 WT5 C2 C1 SING N N 5 WT5 O4 C6 SING N N 6 WT5 C1 O1 SING N N 7 WT5 C1 C5 SING N N 8 WT5 C4 N1 SING N N 9 WT5 N1 C5 SING N N 10 WT5 N1 C7 SING N N 11 WT5 C23 C24 DOUB Y N 12 WT5 C23 C22 SING Y N 13 WT5 C24 C8 SING Y N 14 WT5 C5 C6 SING N N 15 WT5 C22 C9 DOUB Y N 16 WT5 C8 C7 SING N N 17 WT5 C8 N2 DOUB Y N 18 WT5 C9 N2 SING Y N 19 WT5 C9 C10 SING N N 20 WT5 C10 N3 SING N N 21 WT5 N3 C11 SING N N 22 WT5 C21 C11 DOUB Y N 23 WT5 C21 C16 SING Y N 24 WT5 C11 C12 SING Y N 25 WT5 N4 C20 SING Y N 26 WT5 N4 C17 SING Y N 27 WT5 C20 C19 DOUB Y N 28 WT5 C16 C17 SING N N 29 WT5 C16 C15 DOUB Y N 30 WT5 C12 C13 DOUB Y N 31 WT5 C17 C18 DOUB Y N 32 WT5 C15 C13 SING Y N 33 WT5 C13 C14 SING N N 34 WT5 C19 C18 SING Y N 35 WT5 N3 H2 SING N N 36 WT5 C4 H3 SING N N 37 WT5 C4 H4 SING N N 38 WT5 C5 H5 SING N N 39 WT5 C6 H6 SING N N 40 WT5 C6 H7 SING N N 41 WT5 C7 H8 SING N N 42 WT5 C7 H9 SING N N 43 WT5 C10 H10 SING N N 44 WT5 C10 H11 SING N N 45 WT5 C15 H12 SING N N 46 WT5 C20 H13 SING N N 47 WT5 C21 H14 SING N N 48 WT5 C22 H15 SING N N 49 WT5 C24 H16 SING N N 50 WT5 C1 H17 SING N N 51 WT5 C12 H18 SING N N 52 WT5 C14 H19 SING N N 53 WT5 C14 H20 SING N N 54 WT5 C14 H21 SING N N 55 WT5 C18 H22 SING N N 56 WT5 C19 H23 SING N N 57 WT5 C2 H24 SING N N 58 WT5 C23 H25 SING N N 59 WT5 C3 H26 SING N N 60 WT5 N4 H27 SING N N 61 WT5 O1 H28 SING N N 62 WT5 O2 H29 SING N N 63 WT5 O3 H30 SING N N 64 WT5 O4 H31 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WT5 SMILES ACDLabs 12.01 "Cc1cc(cc(c1)c1ccc[NH]1)NCc1nc(CN2CC(O)C(O)C(O)C2CO)ccc1" WT5 InChI InChI 1.06 "InChI=1S/C24H30N4O4/c1-15-8-16(20-6-3-7-25-20)10-19(9-15)26-11-17-4-2-5-18(27-17)12-28-13-22(30)24(32)23(31)21(28)14-29/h2-10,21-26,29-32H,11-14H2,1H3/t21-,22+,23-,24-/m1/s1" WT5 InChIKey InChI 1.06 FVGKDBDETCVPLQ-UEQSERJNSA-N WT5 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(NCc2cccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)n2)cc(c1)c4[nH]ccc4" WT5 SMILES CACTVS 3.385 "Cc1cc(NCc2cccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)n2)cc(c1)c4[nH]ccc4" WT5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(n2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ccc[nH]4" WT5 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(n2)CN3CC(C(C(C3CO)O)O)O)c4ccc[nH]4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WT5 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{[6-({[(5M)-3-methyl-5-(1H-pyrrol-2-yl)phenyl]amino}methyl)pyridin-2-yl]methyl}piperidine-3,4,5-triol" WT5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[6-[[[3-methyl-5-(1~{H}-pyrrol-2-yl)phenyl]amino]methyl]pyridin-2-yl]methyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WT5 "Create component" 2022-10-18 RCSB WT5 "Initial release" 2023-02-22 RCSB #