data_WT7 # _chem_comp.id WT7 _chem_comp.name "5'-O-[(S)-butoxy(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H22 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-06 _chem_comp.pdbx_modified_date 2020-12-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 403.328 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WT7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KNP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WT7 C11 C1 C 0 1 N N R -13.319 7.470 -26.404 0.080 1.681 -0.293 C11 WT7 1 WT7 C10 C2 C 0 1 N N N -12.338 7.057 -25.310 1.347 1.724 0.563 C10 WT7 2 WT7 C01 C3 C 0 1 N N N -14.554 3.907 -22.586 8.433 -3.115 -1.747 C01 WT7 3 WT7 C02 C4 C 0 1 N N N -13.492 2.800 -22.466 7.934 -2.117 -0.701 C02 WT7 4 WT7 C03 C5 C 0 1 N N N -13.142 2.187 -23.828 6.469 -1.774 -0.981 C03 WT7 5 WT7 C04 C6 C 0 1 N N N -12.515 3.216 -24.764 5.970 -0.776 0.065 C04 WT7 6 WT7 C13 C7 C 0 1 N N R -15.467 6.919 -27.212 -1.977 0.687 -0.517 C13 WT7 7 WT7 C15 C8 C 0 1 Y N N -16.434 5.427 -25.396 -2.647 -1.062 1.174 C15 WT7 8 WT7 C17 C9 C 0 1 Y N N -18.537 5.744 -25.703 -4.633 -1.602 0.490 C17 WT7 9 WT7 C18 C10 C 0 1 Y N N -19.927 5.765 -25.691 -5.917 -2.120 0.253 C18 WT7 10 WT7 C21 C11 C 0 1 Y N N -19.846 7.251 -27.460 -6.104 -0.725 -1.576 C21 WT7 11 WT7 C23 C12 C 0 1 Y N N -17.899 6.521 -26.652 -4.140 -0.622 -0.387 C23 WT7 12 WT7 C24 C13 C 0 1 N N R -15.377 8.469 -27.003 -2.300 2.101 0.013 C24 WT7 13 WT7 C26 C14 C 0 1 N N S -14.260 8.562 -25.940 -0.915 2.770 0.164 C26 WT7 14 WT7 N14 N1 N 0 1 Y N N -16.568 6.315 -26.471 -2.888 -0.299 0.071 N14 WT7 15 WT7 N16 N2 N 0 1 Y N N -17.594 5.077 -24.925 -3.671 -1.828 1.417 N16 WT7 16 WT7 N19 N3 N 0 1 N N N -20.657 5.051 -24.821 -6.452 -3.093 1.079 N19 WT7 17 WT7 N20 N4 N 0 1 Y N N -20.554 6.539 -26.585 -6.607 -1.654 -0.783 N20 WT7 18 WT7 N22 N5 N 0 1 Y N N -18.525 7.290 -27.559 -4.902 -0.221 -1.400 N22 WT7 19 WT7 O05 O1 O 0 1 N N N -11.591 4.011 -23.998 4.602 -0.456 -0.196 O05 WT7 20 WT7 O07 O2 O 0 1 N N N -9.681 4.295 -25.753 4.461 1.865 0.787 O07 WT7 21 WT7 O08 O3 O 0 1 N N N -9.955 6.060 -23.718 3.583 -0.039 2.191 O08 WT7 22 WT7 O09 O4 O 0 1 N N N -11.708 5.841 -25.680 2.299 0.789 0.051 O09 WT7 23 WT7 O12 O5 O 0 1 N N N -14.248 6.381 -26.730 -0.620 0.434 -0.093 O12 WT7 24 WT7 O25 O6 O 0 1 N N N -14.988 9.178 -28.173 -3.102 2.818 -0.927 O25 WT7 25 WT7 O27 O7 O 0 1 N N N -13.529 9.805 -26.011 -0.821 3.921 -0.678 O27 WT7 26 WT7 P06 P1 P 0 1 N N N -10.556 5.085 -24.750 3.752 0.568 0.710 P06 WT7 27 WT7 H1 H1 H 0 1 N N N -12.769 7.797 -27.299 0.329 1.813 -1.346 H1 WT7 28 WT7 H2 H2 H 0 1 N N N -11.577 7.841 -25.183 1.771 2.727 0.534 H2 WT7 29 WT7 H3 H3 H 0 1 N N N -12.881 6.917 -24.364 1.099 1.463 1.592 H3 WT7 30 WT7 H4 H4 H 0 1 N N N -14.773 4.316 -21.588 9.476 -3.359 -1.547 H4 WT7 31 WT7 H5 H5 H 0 1 N N N -14.175 4.709 -23.236 7.832 -4.023 -1.699 H5 WT7 32 WT7 H6 H6 H 0 1 N N N -15.474 3.487 -23.020 8.347 -2.674 -2.740 H6 WT7 33 WT7 H7 H7 H 0 1 N N N -13.879 2.007 -21.809 8.020 -2.558 0.292 H7 WT7 34 WT7 H8 H8 H 0 1 N N N -12.580 3.229 -22.025 8.535 -1.209 -0.748 H8 WT7 35 WT7 H9 H9 H 0 1 N N N -14.061 1.797 -24.290 6.383 -1.333 -1.974 H9 WT7 36 WT7 H10 H10 H 0 1 N N N -12.430 1.363 -23.676 5.868 -2.682 -0.933 H10 WT7 37 WT7 H11 H11 H 0 1 N N N -13.299 3.860 -25.189 6.056 -1.217 1.059 H11 WT7 38 WT7 H12 H12 H 0 1 N N N -11.981 2.704 -25.578 6.571 0.132 0.018 H12 WT7 39 WT7 H13 H13 H 0 1 N N N -15.581 6.717 -28.287 -2.045 0.665 -1.605 H13 WT7 40 WT7 H14 H14 H 0 1 N N N -15.488 5.078 -25.008 -1.739 -1.038 1.758 H14 WT7 41 WT7 H15 H15 H 0 1 N N N -20.404 7.857 -28.158 -6.699 -0.374 -2.407 H15 WT7 42 WT7 H16 H16 H 0 1 N N N -16.325 8.846 -26.590 -2.803 2.042 0.979 H16 WT7 43 WT7 H17 H17 H 0 1 N N N -14.652 8.357 -24.933 -0.734 3.041 1.204 H17 WT7 44 WT7 H18 H18 H 0 1 N N N -21.629 5.218 -24.985 -5.939 -3.425 1.832 H18 WT7 45 WT7 H19 H19 H 0 1 N N N -20.461 4.078 -24.942 -7.340 -3.443 0.905 H19 WT7 46 WT7 H20 H20 H 0 1 N N N -9.010 6.079 -23.812 3.125 -0.891 2.217 H20 WT7 47 WT7 H21 H21 H 0 1 N N N -14.952 10.108 -27.983 -3.335 3.713 -0.645 H21 WT7 48 WT7 H22 H22 H 0 1 N N N -12.856 9.816 -25.341 -1.424 4.636 -0.436 H22 WT7 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WT7 O25 C24 SING N N 1 WT7 N22 C21 DOUB Y N 2 WT7 N22 C23 SING Y N 3 WT7 C21 N20 SING Y N 4 WT7 C13 C24 SING N N 5 WT7 C13 O12 SING N N 6 WT7 C13 N14 SING N N 7 WT7 C24 C26 SING N N 8 WT7 O12 C11 SING N N 9 WT7 C23 N14 SING Y N 10 WT7 C23 C17 DOUB Y N 11 WT7 N20 C18 DOUB Y N 12 WT7 N14 C15 SING Y N 13 WT7 C11 C26 SING N N 14 WT7 C11 C10 SING N N 15 WT7 O27 C26 SING N N 16 WT7 O07 P06 DOUB N N 17 WT7 C17 C18 SING Y N 18 WT7 C17 N16 SING Y N 19 WT7 C18 N19 SING N N 20 WT7 O09 C10 SING N N 21 WT7 O09 P06 SING N N 22 WT7 C15 N16 DOUB Y N 23 WT7 C04 O05 SING N N 24 WT7 C04 C03 SING N N 25 WT7 P06 O05 SING N N 26 WT7 P06 O08 SING N N 27 WT7 C03 C02 SING N N 28 WT7 C01 C02 SING N N 29 WT7 C11 H1 SING N N 30 WT7 C10 H2 SING N N 31 WT7 C10 H3 SING N N 32 WT7 C01 H4 SING N N 33 WT7 C01 H5 SING N N 34 WT7 C01 H6 SING N N 35 WT7 C02 H7 SING N N 36 WT7 C02 H8 SING N N 37 WT7 C03 H9 SING N N 38 WT7 C03 H10 SING N N 39 WT7 C04 H11 SING N N 40 WT7 C04 H12 SING N N 41 WT7 C13 H13 SING N N 42 WT7 C15 H14 SING N N 43 WT7 C21 H15 SING N N 44 WT7 C24 H16 SING N N 45 WT7 C26 H17 SING N N 46 WT7 N19 H18 SING N N 47 WT7 N19 H19 SING N N 48 WT7 O08 H20 SING N N 49 WT7 O25 H21 SING N N 50 WT7 O27 H22 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WT7 SMILES ACDLabs 12.01 "C1(C(C(C(O1)n3cnc2c(N)ncnc23)O)O)COP(OCCCC)(=O)O" WT7 InChI InChI 1.03 "InChI=1S/C14H22N5O7P/c1-2-3-4-24-27(22,23)25-5-8-10(20)11(21)14(26-8)19-7-18-9-12(15)16-6-17-13(9)19/h6-8,10-11,14,20-21H,2-5H2,1H3,(H,22,23)(H2,15,16,17)/t8-,10-,11-,14-/m1/s1" WT7 InChIKey InChI 1.03 VOMQEXIAZJZJAB-IDTAVKCVSA-N WT7 SMILES_CANONICAL CACTVS 3.385 "CCCCO[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" WT7 SMILES CACTVS 3.385 "CCCCO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" WT7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCOP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" WT7 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCOP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WT7 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(S)-butoxy(hydroxy)phosphoryl]adenosine" WT7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl butyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WT7 "Create component" 2020-11-06 RCSB WT7 "Initial release" 2020-12-23 RCSB ##