data_WT8 # _chem_comp.id WT8 _chem_comp.name " 7-Acetamido-5-acetimidoyl-3,5,7,9-tetradeoxy-L-glycero-L-manno-nonulosonic aci" _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C13 H23 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-12 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 333.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WT8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QQD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WT8 N1 N1 N 0 1 N N N N N N 279.240 305.548 277.143 -2.162 0.643 0.780 N1 WT8 1 WT8 C4 C1 C 0 1 N N S N N N 276.856 303.600 276.867 0.250 -0.985 0.472 C4 WT8 2 WT8 C5 C2 C 0 1 N N R N N N 278.343 303.242 276.710 0.188 0.503 0.115 C5 WT8 3 WT8 C6 C3 C 0 1 N N S N N N 279.272 304.383 276.277 -1.231 0.862 -0.331 C6 WT8 4 WT8 C7 C4 C 0 1 N N N N N N 275.639 305.186 278.234 -0.675 -3.041 -0.502 C7 WT8 5 WT8 C8 C5 C 0 1 N N N N N N 275.956 306.077 279.399 -1.100 -3.862 -1.692 C8 WT8 6 WT8 C10 C6 C 0 1 N N N N N N 277.505 300.342 276.872 2.881 1.320 0.569 C10 WT8 7 WT8 C13 C7 C 0 1 N N N N N N 278.723 307.852 277.595 -4.418 0.162 1.672 C13 WT8 8 WT8 C1 C8 C 0 1 N N R N N N 277.500 301.198 275.629 2.469 0.498 -0.625 C1 WT8 9 WT8 C11 C9 C 0 1 N N N N N N 281.269 303.545 277.554 -1.000 3.220 0.462 C11 WT8 10 WT8 C12 C10 C 0 1 N N N N N N 279.021 306.752 276.620 -3.462 0.392 0.530 C12 WT8 11 WT8 C2 C11 C 0 1 N N N N N N 276.110 301.784 275.394 2.623 -0.992 -0.297 C2 WT8 12 WT8 C3 C12 C 0 1 N N S N N N 276.098 303.291 275.586 1.686 -1.351 0.860 C3 WT8 13 WT8 C9 C13 C 0 1 N N S N N N 280.709 303.882 276.177 -1.276 2.331 -0.753 C9 WT8 14 WT8 N4 N2 N 0 1 N N N N N N 276.584 304.951 277.327 -0.163 -1.783 -0.685 N4 WT8 15 WT8 N9 N3 N 0 1 N N N N N N 274.482 304.692 278.147 -0.795 -3.523 0.692 N9 WT8 16 WT8 O11 O1 O 0 1 N N N N N N 278.447 299.541 277.048 3.729 2.173 0.452 O11 WT8 17 WT8 O12 O2 O 0 1 N N N N N N 276.566 300.472 277.687 2.305 1.106 1.762 O12 WT8 18 WT8 O13 O3 O 0 1 N N N N N N 281.526 304.886 275.563 -2.569 2.635 -1.281 O13 WT8 19 WT8 O14 O4 O 0 1 N N N N N N 279.053 306.944 275.415 -3.863 0.351 -0.614 O14 WT8 20 WT8 O3 O5 O 0 1 N N N N N N 276.712 303.935 274.464 1.767 -2.753 1.125 O3 WT8 21 WT8 O5 O6 O 0 1 N N N N N N 278.498 302.225 275.707 1.104 0.775 -0.947 O5 WT8 22 WT8 H1 H1 H 0 1 N N N N N N 279.382 305.446 278.128 -1.841 0.676 1.695 H1 WT8 23 WT8 H2 H2 H 0 1 N N N N N N 276.459 302.915 277.631 -0.417 -1.187 1.310 H2 WT8 24 WT8 H3 H3 H 0 1 N N N N N N 278.703 302.858 277.676 0.456 1.097 0.988 H3 WT8 25 WT8 H4 H4 H 0 1 N N N N N N 278.961 304.693 275.269 -1.517 0.232 -1.173 H4 WT8 26 WT8 H5 H5 H 0 1 N N N N N N 275.071 306.164 280.046 -0.244 -4.020 -2.348 H5 WT8 27 WT8 H6 H6 H 0 1 N N N N N N 276.790 305.647 279.973 -1.479 -4.826 -1.351 H6 WT8 28 WT8 H7 H7 H 0 1 N N N N N N 276.240 307.074 279.031 -1.883 -3.335 -2.236 H7 WT8 29 WT8 H8 H8 H 0 1 N N N N N N 278.553 308.791 277.048 -4.439 1.044 2.312 H8 WT8 30 WT8 H9 H9 H 0 1 N N N N N N 277.823 307.596 278.173 -5.417 -0.025 1.277 H9 WT8 31 WT8 H10 H10 H 0 1 N N N N N N 279.575 307.976 278.280 -4.090 -0.701 2.252 H10 WT8 32 WT8 H12 H12 H 0 1 N N N N N N 280.643 302.774 278.027 -0.015 2.988 0.865 H12 WT8 33 WT8 H13 H13 H 0 1 N N N N N N 282.297 303.168 277.449 -1.033 4.267 0.161 H13 WT8 34 WT8 H14 H14 H 0 1 N N N N N N 281.272 304.450 278.180 -1.757 3.037 1.225 H14 WT8 35 WT8 H15 H15 H 0 1 N N N N N N 275.406 301.328 276.105 2.364 -1.586 -1.173 H15 WT8 36 WT8 H16 H16 H 0 1 N N N N N N 275.794 301.553 274.366 3.654 -1.198 -0.008 H16 WT8 37 WT8 H17 H17 H 0 1 N N N N N N 275.057 303.630 275.696 1.976 -0.793 1.751 H17 WT8 38 WT8 H18 H18 H 0 1 N N N N N N 280.718 302.969 275.563 -0.520 2.514 -1.516 H18 WT8 39 WT8 H19 H19 H 0 1 N N N N N N 277.114 305.714 276.957 -0.073 -1.422 -1.581 H19 WT8 40 WT8 H20 H20 H 0 1 N N N N N N 273.896 304.974 278.907 -1.158 -4.413 0.822 H20 WT8 41 WT8 H21 H21 H 0 1 N N N N N N 276.698 299.882 278.420 2.602 1.658 2.499 H21 WT8 42 WT8 H22 H22 H 0 1 N N N N N N 282.421 304.573 275.501 -2.813 2.105 -2.052 H22 WT8 43 WT8 H23 H23 H 0 1 N N N N N N 276.700 304.876 274.593 2.652 -3.056 1.371 H23 WT8 44 WT8 O1 O7 O 0 1 N Y N N N N 277.280 300.570 274.424 3.298 0.829 -1.741 O1 WT8 45 WT8 H24 H24 H 0 1 N N N N N N 278.034 300.036 274.202 3.250 1.758 -2.004 H24 WT8 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WT8 O3 C3 SING N N 1 WT8 C2 C3 SING N N 2 WT8 C2 C1 SING N N 3 WT8 O14 C12 DOUB N N 4 WT8 O13 C9 SING N N 5 WT8 C3 C4 SING N N 6 WT8 C1 O5 SING N N 7 WT8 C1 C10 SING N N 8 WT8 O5 C5 SING N N 9 WT8 C9 C6 SING N N 10 WT8 C9 C11 SING N N 11 WT8 C6 C5 SING N N 12 WT8 C6 N1 SING N N 13 WT8 C12 N1 SING N N 14 WT8 C12 C13 SING N N 15 WT8 C5 C4 SING N N 16 WT8 C4 N4 SING N N 17 WT8 C10 O11 DOUB N N 18 WT8 C10 O12 SING N N 19 WT8 N4 C7 SING N N 20 WT8 N9 C7 DOUB N N 21 WT8 C7 C8 SING N N 22 WT8 N1 H1 SING N N 23 WT8 C4 H2 SING N N 24 WT8 C5 H3 SING N N 25 WT8 C6 H4 SING N N 26 WT8 C8 H5 SING N N 27 WT8 C8 H6 SING N N 28 WT8 C8 H7 SING N N 29 WT8 C13 H8 SING N N 30 WT8 C13 H9 SING N N 31 WT8 C13 H10 SING N N 32 WT8 C11 H12 SING N N 33 WT8 C11 H13 SING N N 34 WT8 C11 H14 SING N N 35 WT8 C2 H15 SING N N 36 WT8 C2 H16 SING N N 37 WT8 C3 H17 SING N N 38 WT8 C9 H18 SING N N 39 WT8 N4 H19 SING N N 40 WT8 N9 H20 SING N N 41 WT8 O12 H21 SING N N 42 WT8 O13 H22 SING N N 43 WT8 O3 H23 SING N N 44 WT8 C1 O1 SING N N 45 WT8 O1 H24 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WT8 InChI InChI 1.06 "InChI=1S/C13H23N3O7/c1-5(17)9(16-7(3)18)11-10(15-6(2)14)8(19)4-13(22,23-11)12(20)21/h5,8-11,17,19,22H,4H2,1-3H3,(H2,14,15)(H,16,18)(H,20,21)/t5-,8-,9-,10-,11-,13+/m0/s1" WT8 InChIKey InChI 1.06 GEBKXROHYJDJCX-RDDKKDHWSA-N WT8 SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@H](NC(C)=O)[C@@H]1O[C@](O)(C[C@H](O)[C@@H]1NC(C)=N)C(O)=O" WT8 SMILES CACTVS 3.385 "C[CH](O)[CH](NC(C)=O)[CH]1O[C](O)(C[CH](O)[CH]1NC(C)=N)C(O)=O" WT8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/C)\NC1C(CC(OC1C(C(C)O)NC(=O)C)(C(=O)O)O)O" WT8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C1C(C(CC(O1)(C(=O)O)O)O)NC(=N)C)NC(=O)C)O" # _pdbx_chem_comp_identifier.comp_id WT8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-(1-acetamido-2-oxidanyl-propyl)-5-(ethanimidoylamino)-2,4-bis(oxidanyl)oxane-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WT8 "Create component" 2023-10-12 PDBE WT8 "Modify leaving atom flag" 2023-10-25 PDBE WT8 "Initial release" 2024-10-16 RCSB #