data_WU8 # _chem_comp.id WU8 _chem_comp.name "3-dodecylsulfanyl-2,2-dimethyl-propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H34 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-13 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WU8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QT2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WU8 C11 C1 C 0 1 N N N N N N 3.048 13.339 8.389 7.456 -0.714 0.001 C11 WU8 1 WU8 C12 C2 C 0 1 N N N N N N 2.752 14.840 8.277 6.315 0.270 0.001 C12 WU8 2 WU8 C13 C3 C 0 1 N N N N N N 2.256 15.136 6.857 6.399 1.150 1.250 C13 WU8 3 WU8 C21 C4 C 0 1 N N N N N N -0.598 21.412 6.670 -2.847 -0.461 0.000 C21 WU8 4 WU8 C14 C5 C 0 1 N N N N N N 4.013 15.662 8.562 6.400 1.149 -1.249 C14 WU8 5 WU8 C17 C6 C 0 1 N N N N N N -0.513 16.619 8.204 2.149 -0.377 0.001 C17 WU8 6 WU8 C18 C7 C 0 1 N N N N N N -1.357 17.870 8.067 0.886 0.485 0.000 C18 WU8 7 WU8 C19 C8 C 0 1 N N N N N N -0.569 19.049 7.532 -0.349 -0.419 0.000 C19 WU8 8 WU8 C20 C9 C 0 1 N N N N N N -1.420 20.241 7.151 -1.613 0.443 0.000 C20 WU8 9 WU8 C15 C10 C 0 1 N N N N N N 1.601 15.175 9.238 4.986 -0.489 0.001 C15 WU8 10 WU8 C22 C11 C 0 1 N N N N N N -0.141 22.331 7.776 -4.111 0.401 -0.000 C22 WU8 11 WU8 C23 C12 C 0 1 N N N N N N -1.142 23.418 8.103 -5.345 -0.503 0.000 C23 WU8 12 WU8 C24 C13 C 0 1 N N N N N N -0.488 24.661 8.659 -6.609 0.359 -0.000 C24 WU8 13 WU8 C25 C14 C 0 1 N N N N N N 0.379 24.380 9.865 -7.843 -0.545 -0.000 C25 WU8 14 WU8 C26 C15 C 0 1 N N N N N N 1.405 25.456 10.147 -9.107 0.317 -0.000 C26 WU8 15 WU8 C27 C16 C 0 1 N N N N N N 2.299 25.101 11.307 -10.341 -0.587 -0.000 C27 WU8 16 WU8 C28 C17 C 0 1 N N N N N N 3.466 26.055 11.468 -11.605 0.275 -0.001 C28 WU8 17 WU8 O29 O1 O 0 1 N N N N N N 2.420 12.618 9.152 7.230 -1.901 0.001 O29 WU8 18 WU8 S16 S1 S 0 1 N N N N N N 1.065 16.902 9.065 3.613 0.695 0.000 S16 WU8 19 WU8 H2 H2 H 0 1 N N N N N N 2.039 16.210 6.760 7.346 1.691 1.250 H2 WU8 20 WU8 H3 H3 H 0 1 N N N N N N 3.032 14.852 6.131 5.574 1.862 1.249 H3 WU8 21 WU8 H4 H4 H 0 1 N N N N N N 1.341 14.558 6.660 6.339 0.524 2.140 H4 WU8 22 WU8 H5 H5 H 0 1 N N N N N N 0.291 21.022 6.153 -2.836 -1.090 -0.890 H5 WU8 23 WU8 H6 H6 H 0 1 N N N N N N -1.206 21.996 5.963 -2.836 -1.090 0.890 H6 WU8 24 WU8 H7 H7 H 0 1 N N N N N N 4.368 15.449 9.581 6.339 0.522 -2.139 H7 WU8 25 WU8 H8 H8 H 0 1 N N N N N N 4.796 15.394 7.838 5.574 1.861 -1.249 H8 WU8 26 WU8 H9 H9 H 0 1 N N N N N N 3.780 16.733 8.472 7.346 1.690 -1.249 H9 WU8 27 WU8 H10 H10 H 0 1 N N N N N N -1.089 15.870 8.768 2.160 -1.006 0.891 H10 WU8 28 WU8 H11 H11 H 0 1 N N N N N N -0.296 16.233 7.197 2.160 -1.006 -0.889 H11 WU8 29 WU8 H12 H12 H 0 1 N N N N N N -1.758 18.134 9.056 0.875 1.115 0.890 H12 WU8 30 WU8 H13 H13 H 0 1 N N N N N N -2.189 17.660 7.378 0.875 1.114 -0.890 H13 WU8 31 WU8 H14 H14 H 0 1 N N N N N N -0.018 18.719 6.639 -0.338 -1.048 -0.889 H14 WU8 32 WU8 H15 H15 H 0 1 N N N N N N 0.144 19.368 8.307 -0.338 -1.048 0.891 H15 WU8 33 WU8 H16 H16 H 0 1 N N N N N N -2.000 20.556 8.031 -1.623 1.072 -0.890 H16 WU8 34 WU8 H17 H17 H 0 1 N N N N N N -2.108 19.940 6.347 -1.623 1.073 0.890 H17 WU8 35 WU8 H18 H18 H 0 1 N N N N N N 0.750 14.514 9.019 4.926 -1.116 -0.889 H18 WU8 36 WU8 H19 H19 H 0 1 N N N N N N 1.939 15.008 10.271 4.926 -1.115 0.891 H19 WU8 37 WU8 H20 H20 H 0 1 N N N N N N 0.030 21.730 8.681 -4.121 1.031 0.890 H20 WU8 38 WU8 H21 H21 H 0 1 N N N N N N 0.802 22.806 7.468 -4.121 1.030 -0.890 H21 WU8 39 WU8 H22 H22 H 0 1 N N N N N N -1.684 23.686 7.184 -5.334 -1.133 -0.890 H22 WU8 40 WU8 H23 H23 H 0 1 N N N N N N -1.852 23.030 8.848 -5.334 -1.132 0.890 H23 WU8 41 WU8 H24 H24 H 0 1 N N N N N N 0.138 25.110 7.874 -6.620 0.989 0.890 H24 WU8 42 WU8 H25 H25 H 0 1 N N N N N N -1.276 25.371 8.951 -6.619 0.988 -0.890 H25 WU8 43 WU8 H26 H26 H 0 1 N N N N N N -0.273 24.284 10.746 -7.832 -1.174 -0.890 H26 WU8 44 WU8 H27 H27 H 0 1 N N N N N N 0.910 23.431 9.697 -7.832 -1.174 0.890 H27 WU8 45 WU8 H28 H28 H 0 1 N N N N N N 2.027 25.596 9.251 -9.118 0.947 0.889 H28 WU8 46 WU8 H29 H29 H 0 1 N N N N N N 0.880 26.394 10.379 -9.118 0.946 -0.891 H29 WU8 47 WU8 H30 H30 H 0 1 N N N N N N 1.700 25.120 12.230 -10.330 -1.217 -0.890 H30 WU8 48 WU8 H31 H31 H 0 1 N N N N N N 2.694 24.087 11.147 -10.331 -1.216 0.890 H31 WU8 49 WU8 H32 H32 H 0 1 N N N N N N 4.078 25.744 12.327 -11.616 0.905 0.889 H32 WU8 50 WU8 H33 H33 H 0 1 N N N N N N 4.080 26.040 10.556 -11.616 0.904 -0.891 H33 WU8 51 WU8 H34 H34 H 0 1 N N N N N N 3.086 27.073 11.638 -12.484 -0.369 -0.001 H34 WU8 52 WU8 O1 O2 O 0 1 N Y N N N N 4.016 12.877 7.603 8.724 -0.272 -0.004 O1 WU8 53 WU8 H1 H1 H 0 1 N Y N N N N 4.117 11.942 7.741 9.422 -0.941 -0.008 H1 WU8 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WU8 C21 C20 SING N N 1 WU8 C21 C22 SING N N 2 WU8 C13 C12 SING N N 3 WU8 C20 C19 SING N N 4 WU8 C19 C18 SING N N 5 WU8 C22 C23 SING N N 6 WU8 C18 C17 SING N N 7 WU8 C23 C24 SING N N 8 WU8 C17 S16 SING N N 9 WU8 C12 C11 SING N N 10 WU8 C12 C14 SING N N 11 WU8 C12 C15 SING N N 12 WU8 C11 O29 DOUB N N 13 WU8 C24 C25 SING N N 14 WU8 S16 C15 SING N N 15 WU8 C25 C26 SING N N 16 WU8 C26 C27 SING N N 17 WU8 C27 C28 SING N N 18 WU8 C13 H2 SING N N 19 WU8 C13 H3 SING N N 20 WU8 C13 H4 SING N N 21 WU8 C21 H5 SING N N 22 WU8 C21 H6 SING N N 23 WU8 C14 H7 SING N N 24 WU8 C14 H8 SING N N 25 WU8 C14 H9 SING N N 26 WU8 C17 H10 SING N N 27 WU8 C17 H11 SING N N 28 WU8 C18 H12 SING N N 29 WU8 C18 H13 SING N N 30 WU8 C19 H14 SING N N 31 WU8 C19 H15 SING N N 32 WU8 C20 H16 SING N N 33 WU8 C20 H17 SING N N 34 WU8 C15 H18 SING N N 35 WU8 C15 H19 SING N N 36 WU8 C22 H20 SING N N 37 WU8 C22 H21 SING N N 38 WU8 C23 H22 SING N N 39 WU8 C23 H23 SING N N 40 WU8 C24 H24 SING N N 41 WU8 C24 H25 SING N N 42 WU8 C25 H26 SING N N 43 WU8 C25 H27 SING N N 44 WU8 C26 H28 SING N N 45 WU8 C26 H29 SING N N 46 WU8 C27 H30 SING N N 47 WU8 C27 H31 SING N N 48 WU8 C28 H32 SING N N 49 WU8 C28 H33 SING N N 50 WU8 C28 H34 SING N N 51 WU8 C11 O1 SING N N 52 WU8 O1 H1 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WU8 InChI InChI 1.06 "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-15-17(2,3)16(18)19/h4-15H2,1-3H3,(H,18,19)" WU8 InChIKey InChI 1.06 CBYMTUKZNNXAOB-UHFFFAOYSA-N WU8 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCSCC(C)(C)C(O)=O" WU8 SMILES CACTVS 3.385 "CCCCCCCCCCCCSCC(C)(C)C(O)=O" WU8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSCC(C)(C)C(=O)O" WU8 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSCC(C)(C)C(=O)O" # _pdbx_chem_comp_identifier.comp_id WU8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-dodecylsulfanyl-2,2-dimethyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WU8 "Create component" 2023-10-13 PDBE WU8 "Modify coordinates" 2023-10-16 PDBE WU8 "Modify PCM" 2024-09-27 PDBE WU8 "Initial release" 2024-10-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WU8 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #