data_WUD # _chem_comp.id WUD _chem_comp.name ingenol-3-angelate _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ingenol mebutate; (1aR,2S,5R,5aS,6S,8aS,9R,10aR)-5,5a-dihydroxy-4-(hydroxymethyl)-1,1,7,9-tetramethyl-11-oxo-1a,2,5,5a,6,9,10,10a-octahydro-1H-2,8a-methanocyclopenta[a]cyclopropa[e][10]annulen-6-yl (2Z)-2-methylbut-2-enoate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-15 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 430.534 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WUD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WUD C C1 C 0 1 N N N -8.313 -5.586 1.830 -8.313 -5.586 1.830 C WUD 1 WUD O O1 O 0 1 N N N -5.680 -4.328 2.322 -5.680 -4.328 2.322 O WUD 2 WUD C1 C2 C 0 1 N N N -7.926 -5.004 0.489 -7.926 -5.004 0.489 C1 WUD 3 WUD C10 C3 C 0 1 N N R -3.777 -0.749 3.262 -3.777 -0.749 3.262 C10 WUD 4 WUD C11 C4 C 0 1 N N N -4.066 0.482 4.087 -4.066 0.482 4.087 C11 WUD 5 WUD C12 C5 C 0 1 N N N -4.655 1.627 3.669 -4.655 1.627 3.669 C12 WUD 6 WUD C13 C6 C 0 1 N N S -5.130 1.710 2.249 -5.130 1.710 2.249 C13 WUD 7 WUD C14 C7 C 0 1 N N N -3.932 1.372 1.420 -3.932 1.372 1.420 C14 WUD 8 WUD C15 C8 C 0 1 N N R -5.777 2.986 1.711 -5.777 2.986 1.711 C15 WUD 9 WUD C16 C9 C 0 1 N N R -6.375 2.542 0.357 -6.375 2.542 0.357 C16 WUD 10 WUD C17 C10 C 0 1 N N N -7.294 2.969 1.512 -7.294 2.969 1.512 C17 WUD 11 WUD C18 C11 C 0 1 N N N -8.024 1.913 2.351 -8.024 1.913 2.351 C18 WUD 12 WUD C19 C12 C 0 1 N N N -7.950 4.331 1.351 -7.950 4.331 1.351 C19 WUD 13 WUD C2 C13 C 0 1 N N N -6.802 -4.293 0.231 -6.802 -4.293 0.231 C2 WUD 14 WUD C20 C14 C 0 1 N N N -6.465 1.019 0.104 -6.465 1.019 0.104 C20 WUD 15 WUD C21 C15 C 0 1 N N R -5.185 0.242 -0.302 -5.185 0.242 -0.302 C21 WUD 16 WUD C22 C16 C 0 1 N N N -4.527 0.891 -1.522 -4.527 0.891 -1.522 C22 WUD 17 WUD C23 C17 C 0 1 N N N -3.591 0.412 5.527 -3.591 0.412 5.527 C23 WUD 18 WUD C24 C18 C 0 1 N N N -1.756 -2.845 0.020 -1.756 -2.845 0.020 C24 WUD 19 WUD C3 C19 C 0 1 N N N -6.545 -3.767 -1.142 -6.545 -3.767 -1.142 C3 WUD 20 WUD C4 C20 C 0 1 N N N -5.762 -3.929 1.169 -5.762 -3.929 1.169 C4 WUD 21 WUD C5 C21 C 0 1 N N S -3.899 -2.314 1.420 -3.899 -2.314 1.420 C5 WUD 22 WUD C6 C22 C 0 1 N N N -2.802 -1.874 0.508 -2.802 -1.874 0.508 C6 WUD 23 WUD C7 C23 C 0 1 N N N -2.866 -0.572 0.193 -2.866 -0.572 0.193 C7 WUD 24 WUD C8 C24 C 0 1 N N S -4.117 0.032 0.801 -4.117 0.032 0.801 C8 WUD 25 WUD C9 C25 C 0 1 N N S -4.467 -0.986 1.905 -4.467 -0.986 1.905 C9 WUD 26 WUD O1 O2 O 0 1 N N N -4.823 -2.987 0.593 -4.823 -2.987 0.593 O1 WUD 27 WUD O2 O3 O 0 1 N N N -2.944 2.108 1.300 -2.944 2.108 1.300 O2 WUD 28 WUD O3 O4 O 0 1 N N N -2.181 0.181 5.556 -2.181 0.181 5.556 O3 WUD 29 WUD O4 O5 O 0 1 N N N -4.161 -1.854 4.073 -4.161 -1.854 4.073 O4 WUD 30 WUD O5 O6 O 0 1 N N N -5.868 -1.217 2.094 -5.868 -1.217 2.094 O5 WUD 31 WUD H1 H1 H 0 1 N N N -9.275 -6.111 1.739 -9.276 -6.111 1.739 H1 WUD 32 WUD H2 H2 H 0 1 N N N -7.539 -6.295 2.159 -7.539 -6.295 2.159 H2 WUD 33 WUD H3 H3 H 0 1 N N N -8.406 -4.776 2.568 -8.406 -4.776 2.568 H3 WUD 34 WUD H4 H4 H 0 1 N N N -8.605 -5.170 -0.335 -8.605 -5.169 -0.335 H4 WUD 35 WUD H5 H5 H 0 1 N N N -2.691 -0.792 3.091 -2.691 -0.792 3.092 H5 WUD 36 WUD H6 H6 H 0 1 N N N -4.780 2.462 4.343 -4.780 2.462 4.343 H6 WUD 37 WUD H7 H7 H 0 1 N N N -5.861 0.900 2.106 -5.861 0.900 2.106 H7 WUD 38 WUD H8 H8 H 0 1 N N N -5.243 3.945 1.781 -5.243 3.945 1.781 H8 WUD 39 WUD H9 H9 H 0 1 N N N -6.269 3.212 -0.509 -6.269 3.212 -0.509 H9 WUD 40 WUD H10 H10 H 0 1 N N N -8.629 2.411 3.123 -8.629 2.411 3.123 H10 WUD 41 WUD H11 H11 H 0 1 N N N -8.680 1.317 1.700 -8.680 1.317 1.700 H11 WUD 42 WUD H12 H12 H 0 1 N N N -7.287 1.253 2.832 -7.287 1.253 2.832 H12 WUD 43 WUD H13 H13 H 0 1 N N N -8.583 4.539 2.226 -8.583 4.540 2.226 H13 WUD 44 WUD H14 H14 H 0 1 N N N -7.173 5.105 1.268 -7.173 5.105 1.268 H14 WUD 45 WUD H15 H15 H 0 1 N N N -8.569 4.334 0.442 -8.569 4.334 0.442 H15 WUD 46 WUD H16 H16 H 0 1 N N N -7.200 0.870 -0.700 -7.200 0.870 -0.701 H16 WUD 47 WUD H17 H17 H 0 1 N N N -6.838 0.561 1.032 -6.838 0.561 1.032 H17 WUD 48 WUD H18 H18 H 0 1 N N N -5.513 -0.760 -0.615 -5.514 -0.760 -0.615 H18 WUD 49 WUD H19 H19 H 0 1 N N N -3.623 0.327 -1.795 -3.623 0.327 -1.795 H19 WUD 50 WUD H20 H20 H 0 1 N N N -5.232 0.883 -2.366 -5.232 0.883 -2.366 H20 WUD 51 WUD H21 H21 H 0 1 N N N -4.253 1.929 -1.282 -4.253 1.929 -1.282 H21 WUD 52 WUD H22 H22 H 0 1 N N N -3.817 1.362 6.034 -3.817 1.362 6.034 H22 WUD 53 WUD H23 H23 H 0 1 N N N -4.107 -0.411 6.043 -4.107 -0.411 6.043 H23 WUD 54 WUD H24 H24 H 0 1 N N N -1.955 -3.842 0.441 -1.955 -3.842 0.441 H24 WUD 55 WUD H25 H25 H 0 1 N N N -1.789 -2.898 -1.078 -1.789 -2.898 -1.078 H25 WUD 56 WUD H26 H26 H 0 1 N N N -0.761 -2.504 0.341 -0.761 -2.504 0.341 H26 WUD 57 WUD H27 H27 H 0 1 N N N -5.590 -3.221 -1.153 -5.590 -3.221 -1.153 H27 WUD 58 WUD H28 H28 H 0 1 N N N -6.496 -4.605 -1.852 -6.496 -4.605 -1.852 H28 WUD 59 WUD H29 H29 H 0 1 N N N -7.360 -3.087 -1.433 -7.360 -3.087 -1.433 H29 WUD 60 WUD H30 H30 H 0 1 N N N -3.526 -2.927 2.254 -3.526 -2.927 2.254 H30 WUD 61 WUD H32 H32 H 0 1 N N N -2.140 -0.037 -0.401 -2.140 -0.037 -0.401 H32 WUD 62 WUD H34 H34 H 0 1 N N N -1.885 0.137 6.458 -1.885 0.137 6.458 H34 WUD 63 WUD H35 H35 H 0 1 N N N -3.766 -1.769 4.933 -3.766 -1.769 4.933 H35 WUD 64 WUD H36 H36 H 0 1 N N N -5.994 -1.853 2.788 -5.994 -1.853 2.788 H36 WUD 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WUD C22 C21 SING N N 1 WUD C3 C2 SING N N 2 WUD C21 C20 SING N N 3 WUD C21 C8 SING N N 4 WUD C24 C6 SING N N 5 WUD C20 C16 SING N N 6 WUD C7 C6 DOUB N N 7 WUD C7 C8 SING N N 8 WUD C2 C1 DOUB N Z 9 WUD C2 C4 SING N N 10 WUD C16 C17 SING N N 11 WUD C16 C15 SING N N 12 WUD C1 C SING N N 13 WUD C6 C5 SING N N 14 WUD O1 C4 SING N N 15 WUD O1 C5 SING N N 16 WUD C8 C14 SING N N 17 WUD C8 C9 SING N N 18 WUD C4 O DOUB N N 19 WUD O2 C14 DOUB N N 20 WUD C19 C17 SING N N 21 WUD C5 C9 SING N N 22 WUD C14 C13 SING N N 23 WUD C17 C15 SING N N 24 WUD C17 C18 SING N N 25 WUD C15 C13 SING N N 26 WUD C9 O5 SING N N 27 WUD C9 C10 SING N N 28 WUD C13 C12 SING N N 29 WUD C10 O4 SING N N 30 WUD C10 C11 SING N N 31 WUD C12 C11 DOUB N N 32 WUD C11 C23 SING N N 33 WUD C23 O3 SING N N 34 WUD C H1 SING N N 35 WUD C H2 SING N N 36 WUD C H3 SING N N 37 WUD C1 H4 SING N N 38 WUD C10 H5 SING N N 39 WUD C12 H6 SING N N 40 WUD C13 H7 SING N N 41 WUD C15 H8 SING N N 42 WUD C16 H9 SING N N 43 WUD C18 H10 SING N N 44 WUD C18 H11 SING N N 45 WUD C18 H12 SING N N 46 WUD C19 H13 SING N N 47 WUD C19 H14 SING N N 48 WUD C19 H15 SING N N 49 WUD C20 H16 SING N N 50 WUD C20 H17 SING N N 51 WUD C21 H18 SING N N 52 WUD C22 H19 SING N N 53 WUD C22 H20 SING N N 54 WUD C22 H21 SING N N 55 WUD C23 H22 SING N N 56 WUD C23 H23 SING N N 57 WUD C24 H24 SING N N 58 WUD C24 H25 SING N N 59 WUD C24 H26 SING N N 60 WUD C3 H27 SING N N 61 WUD C3 H28 SING N N 62 WUD C3 H29 SING N N 63 WUD C5 H30 SING N N 64 WUD C7 H32 SING N N 65 WUD O3 H34 SING N N 66 WUD O4 H35 SING N N 67 WUD O5 H36 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WUD SMILES ACDLabs 12.01 "C[C@H]=C(C(=O)OC3C4(C(O)C(CO)=CC1C(C4(C(CC2C1C2(C)C)C)C=C3C)=O)O)C" WUD InChI InChI 1.03 "InChI=1S/C25H34O6/c1-7-12(2)22(29)31-21-13(3)10-24-14(4)8-17-18(23(17,5)6)16(20(24)28)9-15(11-26)19(27)25(21,24)30/h7,9-10,14,16-19,21,26-27,30H,8,11H2,1-6H3/b12-7-/t14-,16+,17-,18+,19-,21+,24+,25+/m1/s1" WUD InChIKey InChI 1.03 VDJHFHXMUKFKET-WDUFCVPESA-N WUD SMILES_CANONICAL CACTVS 3.385 "C/C=C(/C)C(=O)O[C@H]1C(=C[C@@]23[C@H](C)C[C@@H]4[C@H]([C@H](C=C(CO)[C@@H](O)[C@]12O)C3=O)C4(C)C)C" WUD SMILES CACTVS 3.385 "CC=C(C)C(=O)O[CH]1C(=C[C]23[CH](C)C[CH]4[CH]([CH](C=C(CO)[CH](O)[C]12O)C3=O)C4(C)C)C" WUD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C(/C)\C(=O)O[C@H]1C(=C[C@@]23[C@@]1([C@@H](C(=C[C@H](C2=O)[C@H]4[C@H](C4(C)C)C[C@H]3C)CO)O)O)C" WUD SMILES "OpenEye OEToolkits" 2.0.7 "CC=C(C)C(=O)OC1C(=CC23C1(C(C(=CC(C2=O)C4C(C4(C)C)CC3C)CO)O)O)C" # _pdbx_chem_comp_identifier.comp_id WUD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1aR,2S,5R,5aS,6S,8aS,9R,10aR)-5,5a-dihydroxy-4-(hydroxymethyl)-1,1,7,9-tetramethyl-11-oxo-1a,2,5,5a,6,9,10,10a-octahydro-1H-2,8a-methanocyclopenta[a]cyclopropa[e][10]annulen-6-yl (2Z)-2-methylbut-2-enoate" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 WUD "ingenol mebutate" PDB ? 2 WUD "(1aR,2S,5R,5aS,6S,8aS,9R,10aR)-5,5a-dihydroxy-4-(hydroxymethyl)-1,1,7,9-tetramethyl-11-oxo-1a,2,5,5a,6,9,10,10a-octahydro-1H-2,8a-methanocyclopenta[a]cyclopropa[e][10]annulen-6-yl (2Z)-2-methylbut-2-enoate" PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WUD "Create component" 2020-11-15 RCSB WUD "Modify synonyms" 2021-03-13 RCSB WUD "Initial release" 2022-05-04 RCSB ##