data_WUV # _chem_comp.id WUV _chem_comp.name "5'-thiothymidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N2 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-17 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.294 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WUV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WUV C10 C1 C 0 1 N N N 4.933 -98.994 16.600 3.384 -0.583 0.567 C10 WUV 1 WUV C13 C2 C 0 1 N N N 4.072 -96.655 21.253 -1.219 -0.031 0.898 C13 WUV 2 WUV C01 C3 C 0 1 N N N 7.865 -95.889 19.536 -4.540 -0.237 -1.711 C01 WUV 3 WUV C02 C4 C 0 1 N N N 6.494 -96.184 20.136 -3.354 -0.154 -0.786 C02 WUV 4 WUV C03 C5 C 0 1 N N N 5.675 -97.171 19.655 -2.136 0.179 -1.263 C03 WUV 5 WUV N04 N1 N 0 1 N N N 4.511 -97.402 20.246 -1.066 0.233 -0.412 N04 WUV 6 WUV C05 C6 C 0 1 N N R 3.607 -98.393 19.687 0.259 0.582 -0.932 C05 WUV 7 WUV C06 C7 C 0 1 N N N 2.880 -97.626 18.506 0.726 1.918 -0.322 C06 WUV 8 WUV C07 C8 C 0 1 N N S 2.760 -98.685 17.366 2.055 1.566 0.388 C07 WUV 9 WUV O08 O1 O 0 1 N N N 1.532 -99.449 17.665 3.031 2.590 0.185 O08 WUV 10 WUV C09 C9 C 0 1 N N S 3.824 -99.421 17.501 2.471 0.256 -0.329 C09 WUV 11 WUV S11 S1 S 0 1 N N N 6.413 -100.044 16.809 3.969 -2.032 -0.355 S11 WUV 12 WUV O12 O2 O 0 1 N N N 4.275 -99.349 19.124 1.214 -0.423 -0.551 O12 WUV 13 WUV O14 O3 O 0 1 N N N 3.016 -96.899 21.743 -0.255 0.028 1.638 O14 WUV 14 WUV N15 N2 N 0 1 N N N 4.845 -95.682 21.734 -2.424 -0.354 1.403 N15 WUV 15 WUV C16 C10 C 0 1 N N N 6.034 -95.447 21.191 -3.502 -0.424 0.596 C16 WUV 16 WUV O17 O4 O 0 1 N N N 6.708 -94.565 21.571 -4.591 -0.726 1.050 O17 WUV 17 WUV H1 H1 H 0 1 N N N 5.199 -97.952 16.831 4.238 0.018 0.879 H1 WUV 18 WUV H2 H2 H 0 1 N N N 4.591 -99.062 15.557 2.829 -0.911 1.446 H2 WUV 19 WUV H3 H3 H 0 1 N N N 8.335 -95.059 20.084 -5.426 -0.518 -1.142 H3 WUV 20 WUV H4 H4 H 0 1 N N N 8.499 -96.785 19.612 -4.703 0.733 -2.182 H4 WUV 21 WUV H5 H5 H 0 1 N N N 7.750 -95.610 18.478 -4.350 -0.986 -2.480 H5 WUV 22 WUV H6 H6 H 0 1 N N N 5.976 -97.757 18.799 -2.003 0.388 -2.315 H6 WUV 23 WUV H7 H7 H 0 1 N N N 2.865 -98.729 20.426 0.220 0.664 -2.019 H7 WUV 24 WUV H8 H8 H 0 1 N N N 3.479 -96.765 18.175 0.896 2.656 -1.106 H8 WUV 25 WUV H9 H9 H 0 1 N N N 1.885 -97.280 18.822 -0.007 2.286 0.395 H9 WUV 26 WUV H10 H10 H 0 1 N N N 2.684 -98.180 16.392 1.893 1.391 1.452 H10 WUV 27 WUV H11 H11 H 0 1 N N N 0.774 -98.886 17.558 2.816 3.429 0.615 H11 WUV 28 WUV H12 H12 H 0 1 N N N 3.601 -100.478 17.294 2.962 0.477 -1.277 H12 WUV 29 WUV H13 H13 H 0 1 N N N 7.241 -99.518 15.956 4.747 -2.666 0.541 H13 WUV 30 WUV H14 H14 H 0 1 N N N 4.530 -95.128 22.505 -2.517 -0.538 2.351 H14 WUV 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WUV C10 S11 SING N N 1 WUV C10 C09 SING N N 2 WUV C07 C09 SING N N 3 WUV C07 O08 SING N N 4 WUV C07 C06 SING N N 5 WUV C09 O12 SING N N 6 WUV C06 C05 SING N N 7 WUV O12 C05 SING N N 8 WUV C01 C02 SING N N 9 WUV C03 C02 DOUB N N 10 WUV C03 N04 SING N N 11 WUV C05 N04 SING N N 12 WUV C02 C16 SING N N 13 WUV N04 C13 SING N N 14 WUV C16 O17 DOUB N N 15 WUV C16 N15 SING N N 16 WUV C13 N15 SING N N 17 WUV C13 O14 DOUB N N 18 WUV C10 H1 SING N N 19 WUV C10 H2 SING N N 20 WUV C01 H3 SING N N 21 WUV C01 H4 SING N N 22 WUV C01 H5 SING N N 23 WUV C03 H6 SING N N 24 WUV C05 H7 SING N N 25 WUV C06 H8 SING N N 26 WUV C06 H9 SING N N 27 WUV C07 H10 SING N N 28 WUV O08 H11 SING N N 29 WUV C09 H12 SING N N 30 WUV S11 H13 SING N N 31 WUV N15 H14 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WUV SMILES ACDLabs 12.01 "C(S)C2C(CC(N1C(NC(C(C)=C1)=O)=O)O2)O" WUV InChI InChI 1.03 "InChI=1S/C10H14N2O4S/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(4-17)16-8/h3,6-8,13,17H,2,4H2,1H3,(H,11,14,15)/t6-,7+,8+/m0/s1" WUV InChIKey InChI 1.03 CPEAGKYEYPXTSP-XLPZGREQSA-N WUV SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CS)O2)C(=O)NC1=O" WUV SMILES CACTVS 3.385 "CC1=CN([CH]2C[CH](O)[CH](CS)O2)C(=O)NC1=O" WUV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CS)O" WUV SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CS)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WUV "SYSTEMATIC NAME" ACDLabs 12.01 "5'-thiothymidine" WUV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-methyl-1-[(2~{R},4~{S},5~{S})-4-oxidanyl-5-(sulfanylmethyl)oxolan-2-yl]pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WUV "Create component" 2020-11-17 RCSB WUV "Initial release" 2020-11-25 RCSB ##