data_WV3
#
_chem_comp.id WV3
_chem_comp.name "4-{(2R)-2-[(1R,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H23 N O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-10-13
_chem_comp.pdbx_modified_date 2024-11-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 281.347
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WV3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8UKB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WV3 C1 C1 C 0 1 N N R N N N 230.166 265.037 259.097 3.562 1.631 -0.348 C1 WV3 1
WV3 C2 C2 C 0 1 N N N N N N 230.315 264.059 257.950 4.500 0.428 -0.459 C2 WV3 2
WV3 C3 C3 C 0 1 N N S N N N 231.057 262.746 258.223 4.239 -0.530 0.708 C3 WV3 3
WV3 C4 C4 C 0 1 N N N N N N 232.101 262.728 259.385 2.769 -0.885 0.721 C4 WV3 4
WV3 C5 C5 C 0 1 N N S N N N 231.828 263.803 260.488 1.759 0.241 0.683 C5 WV3 5
WV3 C6 C6 C 0 1 N N N N N N 230.444 264.436 260.448 2.109 1.171 -0.484 C6 WV3 6
WV3 O2 O1 O 0 1 N N N N N N 233.699 264.871 267.347 -4.035 -1.870 -1.609 O2 WV3 7
WV3 C12 C7 C 0 1 N N N N N N 233.996 264.318 266.348 -3.761 -0.919 -0.909 C12 WV3 8
WV3 N N1 N 0 1 N N N N N N 234.689 263.090 266.305 -4.733 -0.314 -0.211 N WV3 9
WV3 C11 C8 C 0 1 N N N N N N 235.027 262.472 265.079 -4.501 0.736 0.591 C11 WV3 10
WV3 O1 O2 O 0 1 N N N N N N 236.058 261.925 264.902 -5.422 1.232 1.203 O1 WV3 11
WV3 C10 C9 C 0 1 N N N N N N 233.938 262.558 264.013 -3.117 1.310 0.746 C10 WV3 12
WV3 C13 C10 C 0 1 N N N N N N 233.663 264.826 264.954 -2.334 -0.444 -0.836 C13 WV3 13
WV3 C9 C11 C 0 1 N N N N N N 232.965 263.745 264.114 -2.084 0.199 0.530 C9 WV3 14
WV3 C8 C12 C 0 1 N N N N N N 232.664 264.274 262.758 -0.675 0.793 0.570 C8 WV3 15
WV3 C7 C13 C 0 1 N N R N N N 232.016 263.208 261.882 0.356 -0.334 0.479 C7 WV3 16
WV3 O3 O3 O 0 1 N N N N N N 230.773 262.863 262.412 0.276 -0.950 -0.808 O3 WV3 17
WV3 O O4 O 0 1 N N N N N N 233.032 261.975 259.401 2.410 -2.037 0.759 O WV3 18
WV3 C14 C14 C 0 1 N N N N N N 230.043 261.619 258.427 5.073 -1.800 0.527 C14 WV3 19
WV3 C C15 C 0 1 N N N N N N 228.694 265.545 259.102 3.885 2.630 -1.461 C WV3 20
WV3 H1 H1 H 0 1 N N N N N N 230.835 265.894 258.933 3.701 2.111 0.621 H1 WV3 21
WV3 H2 H2 H 0 1 N N N N N N 230.853 264.579 257.143 4.317 -0.090 -1.401 H2 WV3 22
WV3 H3 H3 H 0 1 N N N N N N 229.303 263.799 257.607 5.534 0.769 -0.426 H3 WV3 23
WV3 H4 H4 H 0 1 N N N N N N 231.614 262.505 257.306 4.507 -0.045 1.647 H4 WV3 24
WV3 H5 H5 H 0 1 N N N N N N 232.571 264.604 260.359 1.795 0.796 1.621 H5 WV3 25
WV3 H7 H6 H 0 1 N N N N N N 229.689 263.665 260.661 1.450 2.039 -0.467 H7 WV3 26
WV3 H6 H7 H 0 1 N N N N N N 230.387 265.226 261.212 1.984 0.636 -1.425 H6 WV3 27
WV3 H8 H8 H 0 1 N N N N N N 234.948 262.646 267.163 -5.640 -0.648 -0.289 H8 WV3 28
WV3 H9 H9 H 0 1 N N N N N N 234.435 262.616 263.033 -2.965 2.098 0.008 H9 WV3 29
WV3 H10 H10 H 0 1 N N N N N N 233.344 261.634 264.068 -3.004 1.723 1.749 H10 WV3 30
WV3 H11 H11 H 0 1 N N N N N N 234.594 265.125 264.450 -1.660 -1.290 -0.969 H11 WV3 31
WV3 H12 H12 H 0 1 N N N N N N 232.997 265.697 265.040 -2.154 0.292 -1.620 H12 WV3 32
WV3 H13 H13 H 0 1 N N N N N N 232.040 263.425 264.615 -2.189 -0.555 1.310 H13 WV3 33
WV3 H14 H14 H 0 1 N N N N N N 233.601 264.606 262.286 -0.544 1.474 -0.271 H14 WV3 34
WV3 H15 H15 H 0 1 N N N N N N 231.978 265.129 262.850 -0.536 1.337 1.504 H15 WV3 35
WV3 H16 H16 H 0 1 N N N N N N 232.680 262.333 261.819 0.152 -1.076 1.250 H16 WV3 36
WV3 H17 H17 H 0 1 N N N N N N 230.890 262.493 263.279 0.447 -0.346 -1.544 H17 WV3 37
WV3 H20 H18 H 0 1 N N N N N N 229.309 261.633 257.608 4.808 -2.277 -0.417 H20 WV3 38
WV3 H19 H19 H 0 1 N N N N N N 230.567 260.652 258.433 6.132 -1.542 0.518 H19 WV3 39
WV3 H18 H20 H 0 1 N N N N N N 229.525 261.762 259.387 4.873 -2.487 1.349 H18 WV3 40
WV3 H21 H21 H 0 1 N N N N N N 228.555 266.259 259.927 3.221 3.491 -1.380 H21 WV3 41
WV3 H22 H22 H 0 1 N N N N N N 228.475 266.042 258.146 4.919 2.958 -1.366 H22 WV3 42
WV3 H23 H23 H 0 1 N N N N N N 228.012 264.692 259.237 3.743 2.152 -2.431 H23 WV3 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WV3 C14 C3 SING N N 1
WV3 C3 C4 SING N N 2
WV3 C3 C2 SING N N 3
WV3 O C4 DOUB N N 4
WV3 C4 C5 SING N N 5
WV3 C C1 SING N N 6
WV3 C2 C1 SING N N 7
WV3 C5 C7 SING N N 8
WV3 C5 C6 SING N N 9
WV3 C1 C6 SING N N 10
WV3 C7 C8 SING N N 11
WV3 C7 O3 SING N N 12
WV3 C10 C11 SING N N 13
WV3 C10 C9 SING N N 14
WV3 O1 C11 DOUB N N 15
WV3 C8 C9 SING N N 16
WV3 C11 N SING N N 17
WV3 C9 C13 SING N N 18
WV3 C13 C12 SING N N 19
WV3 N C12 SING N N 20
WV3 C12 O2 DOUB N N 21
WV3 C1 H1 SING N N 22
WV3 C2 H2 SING N N 23
WV3 C2 H3 SING N N 24
WV3 C3 H4 SING N N 25
WV3 C5 H5 SING N N 26
WV3 C6 H7 SING N N 27
WV3 C6 H6 SING N N 28
WV3 N H8 SING N N 29
WV3 C10 H9 SING N N 30
WV3 C10 H10 SING N N 31
WV3 C13 H11 SING N N 32
WV3 C13 H12 SING N N 33
WV3 C9 H13 SING N N 34
WV3 C8 H14 SING N N 35
WV3 C8 H15 SING N N 36
WV3 C7 H16 SING N N 37
WV3 O3 H17 SING N N 38
WV3 C14 H20 SING N N 39
WV3 C14 H19 SING N N 40
WV3 C14 H18 SING N N 41
WV3 C H21 SING N N 42
WV3 C H22 SING N N 43
WV3 C H23 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WV3 SMILES ACDLabs 12.01 "O=C1CC(CC(O)C2CC(C)CC(C)C2=O)CC(=O)N1"
WV3 InChI InChI 1.06 "InChI=1S/C15H23NO4/c1-8-3-9(2)15(20)11(4-8)12(17)5-10-6-13(18)16-14(19)7-10/h8-12,17H,3-7H2,1-2H3,(H,16,18,19)"
WV3 InChIKey InChI 1.06 YPHMISFOHDHNIV-UHFFFAOYSA-N
WV3 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1C[C@H](C)C(=O)[C@@H](C1)[C@H](O)CC2CC(=O)NC(=O)C2"
WV3 SMILES CACTVS 3.385 "C[CH]1C[CH](C)C(=O)[CH](C1)[CH](O)CC2CC(=O)NC(=O)C2"
WV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1C[C@@H](C(=O)[C@@H](C1)[C@@H](CC2CC(=O)NC(=O)C2)O)C"
WV3 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CC(C(=O)C(C1)C(CC2CC(=O)NC(=O)C2)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WV3 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{(2R)-2-[(1R,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione"
WV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(2~{R})-2-[(1~{S},3~{S},5~{R})-3,5-dimethyl-2-oxidanylidene-cyclohexyl]-2-oxidanyl-ethyl]piperidine-2,6-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WV3 "Create component" 2023-10-13 RCSB
WV3 "Initial release" 2024-11-20 RCSB
#