data_WV5 # _chem_comp.id WV5 _chem_comp.name "(2R,3R,4R,5S)-1-[8-(furan-2-yl)octyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H31 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-20 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 341.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WV5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EUT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WV5 N1 N1 N 0 1 N N N -35.550 -30.457 -68.752 3.412 0.206 0.061 N1 WV5 1 WV5 C4 C1 C 0 1 N N N -33.776 -28.812 -68.091 4.263 2.484 0.345 C4 WV5 2 WV5 C5 C2 C 0 1 N N N -36.449 -29.833 -68.227 2.116 0.678 0.567 C5 WV5 3 WV5 C6 C3 C 0 1 N N N -36.591 -30.085 -66.722 0.987 -0.050 -0.164 C6 WV5 4 WV5 C7 C4 C 0 1 N N N -37.771 -29.424 -66.055 -0.363 0.442 0.363 C7 WV5 5 WV5 C8 C5 C 0 1 N N N -37.583 -29.246 -64.549 -1.492 -0.286 -0.369 C8 WV5 6 WV5 C10 C6 C 0 1 N N N -39.685 -28.556 -63.225 -3.971 -0.521 -0.573 C10 WV5 7 WV5 C13 C7 C 0 1 Y N N -43.037 -28.238 -65.310 -7.779 -0.272 -0.258 C13 WV5 8 WV5 C15 C8 C 0 1 Y N N -44.095 -29.129 -67.075 -9.660 0.862 0.031 C15 WV5 9 WV5 C17 C9 C 0 1 N N N -35.844 -31.884 -68.813 3.595 -1.225 0.338 C17 WV5 10 WV5 C1 C10 C 0 1 N N R -33.444 -32.332 -69.365 6.069 -0.914 0.218 C1 WV5 11 WV5 O1 O1 O 0 1 N N N -32.533 -32.857 -70.430 7.269 -1.327 -0.441 O1 WV5 12 WV5 C2 C11 C 0 1 N N R -33.112 -30.946 -69.065 5.831 0.576 -0.040 C2 WV5 13 WV5 O2 O2 O 0 1 N N N -31.849 -31.005 -68.366 6.907 1.335 0.516 O2 WV5 14 WV5 C3 C12 C 0 1 N N R -34.191 -30.280 -68.200 4.515 0.999 0.617 C3 WV5 15 WV5 O3 O3 O 0 1 N N N -34.007 -28.229 -69.339 4.262 2.716 -1.065 O3 WV5 16 WV5 O4 O4 O 0 1 Y N N -43.540 -27.246 -66.014 -8.460 -0.801 0.772 O4 WV5 17 WV5 O5 O5 O 0 1 N N N -35.025 -33.868 -70.106 5.071 -3.101 -0.042 O5 WV5 18 WV5 C9 C13 C 0 1 N N N -38.800 -29.695 -63.748 -2.841 0.207 0.159 C9 WV5 19 WV5 C11 C14 C 0 1 N N N -40.677 -28.074 -64.303 -5.320 -0.029 -0.046 C11 WV5 20 WV5 C12 C15 C 0 1 N N N -42.207 -28.069 -64.016 -6.450 -0.757 -0.777 C12 WV5 21 WV5 C14 C16 C 0 1 Y N N -43.341 -29.484 -65.914 -8.487 0.760 -0.751 C14 WV5 22 WV5 C16 C17 C 0 1 Y N N -44.173 -27.718 -67.053 -9.601 -0.116 0.953 C16 WV5 23 WV5 C18 C18 C 0 1 N N S -34.810 -32.469 -69.814 4.883 -1.714 -0.328 C18 WV5 24 WV5 H2 H2 H 0 1 N N N -32.710 -28.739 -67.831 3.298 2.770 0.762 H2 WV5 25 WV5 H3 H3 H 0 1 N N N -34.376 -28.306 -67.321 5.050 3.077 0.810 H3 WV5 26 WV5 H4 H4 H 0 1 N N N -36.261 -28.760 -68.381 2.048 0.475 1.636 H4 WV5 27 WV5 H5 H5 H 0 1 N N N -37.394 -30.113 -68.715 2.029 1.751 0.395 H5 WV5 28 WV5 H6 H6 H 0 1 N N N -36.681 -31.171 -66.568 1.056 0.154 -1.233 H6 WV5 29 WV5 H7 H7 H 0 1 N N N -35.677 -29.720 -66.231 1.075 -1.123 0.008 H7 WV5 30 WV5 H8 H8 H 0 1 N N N -37.921 -28.433 -66.509 -0.431 0.239 1.431 H8 WV5 31 WV5 H9 H9 H 0 1 N N N -38.663 -30.044 -66.226 -0.450 1.515 0.191 H9 WV5 32 WV5 H10 H10 H 0 1 N N N -36.713 -29.839 -64.230 -1.423 -0.082 -1.437 H10 WV5 33 WV5 H11 H11 H 0 1 N N N -37.397 -28.182 -64.341 -1.404 -1.358 -0.197 H11 WV5 34 WV5 H12 H12 H 0 1 N N N -39.044 -27.713 -62.926 -3.902 -0.318 -1.642 H12 WV5 35 WV5 H13 H13 H 0 1 N N N -40.251 -28.914 -62.352 -3.883 -1.594 -0.401 H13 WV5 36 WV5 H14 H14 H 0 1 N N N -44.516 -29.797 -67.812 -10.452 1.587 -0.089 H14 WV5 37 WV5 H15 H15 H 0 1 N N N -36.869 -32.052 -69.175 3.660 -1.381 1.414 H15 WV5 38 WV5 H16 H16 H 0 1 N N N -35.725 -32.345 -67.822 2.747 -1.783 -0.060 H16 WV5 39 WV5 H17 H17 H 0 1 N N N -33.302 -32.937 -68.457 6.164 -1.088 1.289 H17 WV5 40 WV5 H18 H18 H 0 1 N N N -31.631 -32.772 -70.146 7.482 -2.262 -0.320 H18 WV5 41 WV5 H19 H19 H 0 1 N N N -33.002 -30.376 -69.999 5.776 0.756 -1.114 H19 WV5 42 WV5 H20 H20 H 0 1 N N N -31.571 -30.126 -68.138 7.774 1.116 0.147 H20 WV5 43 WV5 H21 H21 H 0 1 N N N -34.152 -30.726 -67.195 4.577 0.832 1.692 H21 WV5 44 WV5 H22 H22 H 0 1 N N N -33.760 -27.312 -69.311 4.107 3.638 -1.311 H22 WV5 45 WV5 H23 H23 H 0 1 N N N -35.917 -33.996 -70.406 4.356 -3.669 -0.359 H23 WV5 46 WV5 H24 H24 H 0 1 N N N -39.416 -30.338 -64.394 -2.910 0.003 1.227 H24 WV5 47 WV5 H25 H25 H 0 1 N N N -38.445 -30.276 -62.884 -2.929 1.279 -0.014 H25 WV5 48 WV5 H26 H26 H 0 1 N N N -40.523 -28.715 -65.184 -5.389 -0.233 1.023 H26 WV5 49 WV5 H27 H27 H 0 1 N N N -40.398 -27.039 -64.549 -5.408 1.043 -0.218 H27 WV5 50 WV5 H28 H28 H 0 1 N N N -42.477 -27.113 -63.543 -6.362 -1.830 -0.605 H28 WV5 51 WV5 H29 H29 H 0 1 N N N -42.443 -28.897 -63.331 -6.381 -0.554 -1.846 H29 WV5 52 WV5 H30 H30 H 0 1 N N N -43.067 -30.472 -65.575 -8.210 1.391 -1.582 H30 WV5 53 WV5 H31 H31 H 0 1 N N N -44.683 -27.116 -67.791 -10.344 -0.316 1.710 H31 WV5 54 WV5 H32 H32 H 0 1 N N N -34.920 -31.904 -70.751 4.813 -1.571 -1.406 H32 WV5 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WV5 O1 C1 SING N N 1 WV5 O5 C18 SING N N 2 WV5 C18 C1 SING N N 3 WV5 C18 C17 SING N N 4 WV5 C1 C2 SING N N 5 WV5 O3 C4 SING N N 6 WV5 C2 O2 SING N N 7 WV5 C2 C3 SING N N 8 WV5 C17 N1 SING N N 9 WV5 N1 C5 SING N N 10 WV5 N1 C3 SING N N 11 WV5 C5 C6 SING N N 12 WV5 C3 C4 SING N N 13 WV5 C15 C16 DOUB Y N 14 WV5 C15 C14 SING Y N 15 WV5 C16 O4 SING Y N 16 WV5 C6 C7 SING N N 17 WV5 C7 C8 SING N N 18 WV5 O4 C13 SING Y N 19 WV5 C14 C13 DOUB Y N 20 WV5 C13 C12 SING N N 21 WV5 C8 C9 SING N N 22 WV5 C11 C12 SING N N 23 WV5 C11 C10 SING N N 24 WV5 C9 C10 SING N N 25 WV5 C4 H2 SING N N 26 WV5 C4 H3 SING N N 27 WV5 C5 H4 SING N N 28 WV5 C5 H5 SING N N 29 WV5 C6 H6 SING N N 30 WV5 C6 H7 SING N N 31 WV5 C7 H8 SING N N 32 WV5 C7 H9 SING N N 33 WV5 C8 H10 SING N N 34 WV5 C8 H11 SING N N 35 WV5 C10 H12 SING N N 36 WV5 C10 H13 SING N N 37 WV5 C15 H14 SING N N 38 WV5 C17 H15 SING N N 39 WV5 C17 H16 SING N N 40 WV5 C1 H17 SING N N 41 WV5 O1 H18 SING N N 42 WV5 C2 H19 SING N N 43 WV5 O2 H20 SING N N 44 WV5 C3 H21 SING N N 45 WV5 O3 H22 SING N N 46 WV5 O5 H23 SING N N 47 WV5 C9 H24 SING N N 48 WV5 C9 H25 SING N N 49 WV5 C11 H26 SING N N 50 WV5 C11 H27 SING N N 51 WV5 C12 H28 SING N N 52 WV5 C12 H29 SING N N 53 WV5 C14 H30 SING N N 54 WV5 C16 H31 SING N N 55 WV5 C18 H32 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WV5 SMILES ACDLabs 12.01 "OCC1C(O)C(O)C(O)CN1CCCCCCCCc1ccco1" WV5 InChI InChI 1.06 "InChI=1S/C18H31NO5/c20-13-15-17(22)18(23)16(21)12-19(15)10-6-4-2-1-3-5-8-14-9-7-11-24-14/h7,9,11,15-18,20-23H,1-6,8,10,12-13H2/t15-,16+,17-,18-/m1/s1" WV5 InChIKey InChI 1.06 SVEHLYNGWWEMLW-XMTFNYHQSA-N WV5 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCCCc2occc2" WV5 SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCCCc2occc2" WV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(oc1)CCCCCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O" WV5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(oc1)CCCCCCCCN2CC(C(C(C2CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WV5 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-1-[8-(furan-2-yl)octyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" WV5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[8-(furan-2-yl)octyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WV5 "Create component" 2022-10-20 RCSB WV5 "Initial release" 2023-02-22 RCSB #