data_WV9 # _chem_comp.id WV9 _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H33 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-10-20 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.480 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WV9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8EUX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WV9 N1 N1 N 0 1 N N N -36.204 -30.485 -68.812 -3.825 0.243 -0.094 N1 WV9 1 WV9 C4 C1 C 0 1 N N N -34.740 -28.656 -68.506 -5.037 2.369 -0.029 C4 WV9 2 WV9 C5 C2 C 0 1 N N N -37.108 -29.929 -68.237 -2.704 0.957 -0.721 C5 WV9 3 WV9 C6 C3 C 0 1 N N N -37.241 -30.129 -66.711 -1.382 0.365 -0.227 C6 WV9 4 WV9 C7 C4 C 0 1 N N N -38.578 -29.613 -66.170 -0.215 1.109 -0.880 C7 WV9 5 WV9 C8 C5 C 0 1 N N N -38.581 -29.336 -64.615 1.107 0.517 -0.386 C8 WV9 6 WV9 C10 C6 C 0 1 Y N N -41.232 -29.013 -64.452 3.575 0.678 -0.552 C10 WV9 7 WV9 C13 C7 C 0 1 Y N N -43.635 -27.855 -65.530 5.964 -0.391 0.341 C13 WV9 8 WV9 C15 C8 C 0 1 N N N -45.821 -27.655 -67.111 8.432 -0.230 0.175 C15 WV9 9 WV9 C17 C9 C 0 1 Y N N -42.577 -27.075 -65.070 5.380 0.662 1.022 C17 WV9 10 WV9 C20 C10 C 0 1 N N S -35.445 -32.409 -70.064 -4.919 -1.913 0.294 C20 WV9 11 WV9 C1 C11 C 0 1 N N R -34.103 -32.302 -69.549 -6.279 -1.275 -0.002 C1 WV9 12 WV9 O1 O1 O 0 1 N N N -33.226 -32.909 -70.604 -7.291 -1.927 0.769 O1 WV9 13 WV9 C2 C12 C 0 1 N N R -33.782 -30.905 -69.201 -6.229 0.209 0.371 C2 WV9 14 WV9 O2 O2 O 0 1 N N N -32.529 -30.951 -68.525 -7.477 0.825 0.045 O2 WV9 15 WV9 C3 C13 C 0 1 N N R -34.849 -30.186 -68.348 -5.104 0.889 -0.413 C3 WV9 16 WV9 O3 O3 O 0 1 N N N -34.371 -28.277 -69.799 -4.859 2.487 1.384 O3 WV9 17 WV9 O4 O4 O 0 1 N N N -46.394 -26.546 -67.834 9.667 -0.782 0.637 O4 WV9 18 WV9 O5 O5 O 0 1 N N N -35.648 -33.813 -70.295 -4.940 -3.286 -0.103 O5 WV9 19 WV9 C9 C14 C 0 1 N N N -39.928 -29.637 -63.844 2.273 1.261 -1.038 C9 WV9 20 WV9 C11 C15 C 0 1 Y N N -42.322 -29.804 -64.872 4.162 -0.369 -1.236 C11 WV9 21 WV9 C12 C16 C 0 1 Y N N -43.526 -29.249 -65.397 5.356 -0.904 -0.790 C12 WV9 22 WV9 C14 C17 C 0 1 N N N -44.876 -27.089 -66.048 7.265 -0.973 0.828 C14 WV9 23 WV9 C16 C18 C 0 1 N N N -47.754 -26.124 -67.767 10.826 -0.155 0.084 C16 WV9 24 WV9 C18 C19 C 0 1 Y N N -41.401 -27.633 -64.536 4.186 1.196 0.576 C18 WV9 25 WV9 C19 C20 C 0 1 N N N -36.447 -31.900 -69.038 -3.832 -1.172 -0.487 C19 WV9 26 WV9 H2 H2 H 0 1 N N N -33.985 -28.281 -67.799 -4.199 2.840 -0.541 H2 WV9 27 WV9 H3 H3 H 0 1 N N N -35.716 -28.207 -68.272 -5.965 2.862 -0.320 H3 WV9 28 WV9 H4 H4 H 0 1 N N N -36.991 -28.850 -68.415 -2.767 0.852 -1.804 H4 WV9 29 WV9 H5 H5 H 0 1 N N N -38.046 -30.277 -68.694 -2.752 2.013 -0.455 H5 WV9 30 WV9 H6 H6 H 0 1 N N N -37.160 -31.203 -66.487 -1.320 0.470 0.856 H6 WV9 31 WV9 H7 H7 H 0 1 N N N -36.425 -29.587 -66.211 -1.335 -0.691 -0.493 H7 WV9 32 WV9 H8 H8 H 0 1 N N N -38.821 -28.674 -66.689 -0.278 1.004 -1.963 H8 WV9 33 WV9 H9 H9 H 0 1 N N N -39.352 -30.364 -66.389 -0.263 2.165 -0.614 H9 WV9 34 WV9 H10 H10 H 0 1 N N N -37.793 -29.957 -64.164 1.169 0.622 0.697 H10 WV9 35 WV9 H11 H11 H 0 1 N N N -38.341 -28.273 -64.465 1.154 -0.538 -0.652 H11 WV9 36 WV9 H12 H12 H 0 1 N N N -46.619 -28.238 -66.629 8.385 0.826 0.441 H12 WV9 37 WV9 H13 H13 H 0 1 N N N -45.261 -28.302 -67.802 8.370 -0.335 -0.908 H13 WV9 38 WV9 H14 H14 H 0 1 N N N -42.663 -26.000 -65.125 5.854 1.063 1.905 H14 WV9 39 WV9 H15 H15 H 0 1 N N N -35.551 -31.839 -70.999 -4.710 -1.846 1.362 H15 WV9 40 WV9 H16 H16 H 0 1 N N N -34.020 -32.916 -68.640 -6.506 -1.377 -1.063 H16 WV9 41 WV9 H17 H17 H 0 1 N N N -32.319 -32.870 -70.324 -7.375 -2.873 0.588 H17 WV9 42 WV9 H18 H18 H 0 1 N N N -33.665 -30.334 -70.134 -6.042 0.310 1.440 H18 WV9 43 WV9 H19 H19 H 0 1 N N N -32.271 -30.071 -68.275 -8.237 0.442 0.505 H19 WV9 44 WV9 H20 H20 H 0 1 N N N -34.727 -30.461 -67.290 -5.300 0.800 -1.481 H20 WV9 45 WV9 H21 H21 H 0 1 N N N -34.317 -27.330 -69.849 -4.808 3.399 1.700 H21 WV9 46 WV9 H22 H22 H 0 1 N N N -36.522 -33.955 -70.638 -4.109 -3.754 0.056 H22 WV9 47 WV9 H23 H23 H 0 1 N N N -40.061 -30.729 -63.815 2.211 1.156 -2.122 H23 WV9 48 WV9 H24 H24 H 0 1 N N N -39.820 -29.254 -62.819 2.226 2.317 -0.772 H24 WV9 49 WV9 H25 H25 H 0 1 N N N -42.241 -30.878 -64.792 3.688 -0.771 -2.120 H25 WV9 50 WV9 H26 H26 H 0 1 N N N -44.343 -29.892 -65.689 5.815 -1.723 -1.324 H26 WV9 51 WV9 H27 H27 H 0 1 N N N -44.498 -26.139 -66.453 7.328 -0.868 1.911 H27 WV9 52 WV9 H28 H28 H 0 1 N N N -45.499 -26.889 -65.164 7.313 -2.029 0.562 H28 WV9 53 WV9 H29 H29 H 0 1 N N N -47.901 -25.254 -68.424 10.814 -0.259 -1.001 H29 WV9 54 WV9 H30 H30 H 0 1 N N N -48.409 -26.945 -68.093 10.829 0.902 0.349 H30 WV9 55 WV9 H31 H31 H 0 1 N N N -48.001 -25.847 -66.732 11.722 -0.632 0.484 H31 WV9 56 WV9 H32 H32 H 0 1 N N N -40.616 -26.980 -64.185 3.730 2.018 1.107 H32 WV9 57 WV9 H33 H33 H 0 1 N N N -37.470 -32.044 -69.416 -4.035 -1.252 -1.555 H33 WV9 58 WV9 H34 H34 H 0 1 N N N -36.324 -32.452 -68.095 -2.861 -1.615 -0.267 H34 WV9 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WV9 O1 C1 SING N N 1 WV9 O5 C20 SING N N 2 WV9 C20 C1 SING N N 3 WV9 C20 C19 SING N N 4 WV9 O3 C4 SING N N 5 WV9 C1 C2 SING N N 6 WV9 C2 O2 SING N N 7 WV9 C2 C3 SING N N 8 WV9 C19 N1 SING N N 9 WV9 N1 C3 SING N N 10 WV9 N1 C5 SING N N 11 WV9 C4 C3 SING N N 12 WV9 C5 C6 SING N N 13 WV9 O4 C16 SING N N 14 WV9 O4 C15 SING N N 15 WV9 C15 C14 SING N N 16 WV9 C6 C7 SING N N 17 WV9 C7 C8 SING N N 18 WV9 C14 C13 SING N N 19 WV9 C13 C12 DOUB Y N 20 WV9 C13 C17 SING Y N 21 WV9 C12 C11 SING Y N 22 WV9 C17 C18 DOUB Y N 23 WV9 C11 C10 DOUB Y N 24 WV9 C8 C9 SING N N 25 WV9 C18 C10 SING Y N 26 WV9 C10 C9 SING N N 27 WV9 C4 H2 SING N N 28 WV9 C4 H3 SING N N 29 WV9 C5 H4 SING N N 30 WV9 C5 H5 SING N N 31 WV9 C6 H6 SING N N 32 WV9 C6 H7 SING N N 33 WV9 C7 H8 SING N N 34 WV9 C7 H9 SING N N 35 WV9 C8 H10 SING N N 36 WV9 C8 H11 SING N N 37 WV9 C15 H12 SING N N 38 WV9 C15 H13 SING N N 39 WV9 C17 H14 SING N N 40 WV9 C20 H15 SING N N 41 WV9 C1 H16 SING N N 42 WV9 O1 H17 SING N N 43 WV9 C2 H18 SING N N 44 WV9 O2 H19 SING N N 45 WV9 C3 H20 SING N N 46 WV9 O3 H21 SING N N 47 WV9 O5 H22 SING N N 48 WV9 C9 H23 SING N N 49 WV9 C9 H24 SING N N 50 WV9 C11 H25 SING N N 51 WV9 C12 H26 SING N N 52 WV9 C14 H27 SING N N 53 WV9 C14 H28 SING N N 54 WV9 C16 H29 SING N N 55 WV9 C16 H30 SING N N 56 WV9 C16 H31 SING N N 57 WV9 C18 H32 SING N N 58 WV9 C19 H33 SING N N 59 WV9 C19 H34 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WV9 SMILES ACDLabs 12.01 "COCCc1ccc(cc1)CCCCCN1CC(O)C(O)C(O)C1CO" WV9 InChI InChI 1.06 "InChI=1S/C20H33NO5/c1-26-12-10-16-8-6-15(7-9-16)5-3-2-4-11-21-13-18(23)20(25)19(24)17(21)14-22/h6-9,17-20,22-25H,2-5,10-14H2,1H3/t17-,18+,19-,20-/m1/s1" WV9 InChIKey InChI 1.06 GOQWFJVPBWGABY-IYWMVGAKSA-N WV9 SMILES_CANONICAL CACTVS 3.385 "COCCc1ccc(CCCCCN2C[C@H](O)[C@@H](O)[C@H](O)[C@H]2CO)cc1" WV9 SMILES CACTVS 3.385 "COCCc1ccc(CCCCCN2C[CH](O)[CH](O)[CH](O)[CH]2CO)cc1" WV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCc1ccc(cc1)CCCCCN2C[C@@H]([C@H]([C@@H]([C@H]2CO)O)O)O" WV9 SMILES "OpenEye OEToolkits" 2.0.7 "COCCc1ccc(cc1)CCCCCN2CC(C(C(C2CO)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WV9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol" WV9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[5-[4-(2-methoxyethyl)phenyl]pentyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WV9 "Create component" 2022-10-20 RCSB WV9 "Initial release" 2023-02-22 RCSB #