data_WVM # _chem_comp.id WVM _chem_comp.name "(8S)-8-fluoro-6-(6-{[(2R)-2-hydroxypropyl]amino}pyrimidin-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-17 _chem_comp.pdbx_modified_date 2022-07-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WVM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S6B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WVM C10 C1 C 0 1 Y N N -44.588 -29.221 6.063 -1.500 3.086 -0.465 C10 WVM 1 WVM N12 N1 N 0 1 N N N -45.258 -29.042 2.482 0.747 0.477 0.485 N12 WVM 2 WVM C13 C2 C 0 1 N N N -44.112 -28.536 1.958 1.913 1.401 0.471 C13 WVM 3 WVM C15 C3 C 0 1 N N N -44.467 -26.207 0.901 4.427 1.102 -0.104 C15 WVM 4 WVM C17 C4 C 0 1 N N N -43.502 -27.688 -0.423 3.781 -0.014 1.587 C17 WVM 5 WVM C20 C5 C 0 1 N N N -46.538 -28.558 1.646 1.052 -0.582 -0.503 C20 WVM 6 WVM C21 C6 C 0 1 N N N -45.990 -29.512 -0.461 3.089 -2.001 -0.174 C21 WVM 7 WVM C01 C7 C 0 1 N N N -50.398 -30.778 6.829 -5.693 -2.807 0.218 C01 WVM 8 WVM C02 C8 C 0 1 N N R -50.131 -29.966 5.528 -5.581 -1.315 -0.102 C02 WVM 9 WVM C04 C9 C 0 1 N N N -49.254 -28.675 5.793 -4.121 -0.875 0.024 C04 WVM 10 WVM C06 C10 C 0 1 Y N N -46.813 -29.132 5.888 -2.779 1.182 -0.233 C06 WVM 11 WVM C07 C11 C 0 1 Y N N -46.732 -29.093 4.514 -1.635 0.466 0.106 C07 WVM 12 WVM C08 C12 C 0 1 Y N N -45.483 -29.092 3.961 -0.421 1.145 0.153 C08 WVM 13 WVM C14 C13 C 0 1 N N N -44.569 -27.736 0.685 3.109 0.451 0.299 C14 WVM 14 WVM C16 C14 C 0 1 N N N -43.414 -26.168 -0.194 4.753 1.166 1.400 C16 WVM 15 WVM C18 C15 C 0 1 N N S -46.064 -28.251 0.460 2.588 -0.654 -0.629 C18 WVM 16 WVM F19 F1 F 0 1 N N N -46.896 -27.318 -0.120 2.983 -0.408 -1.948 F19 WVM 17 WVM N05 N2 N 0 1 N N N -48.075 -29.081 6.513 -4.013 0.554 -0.282 N05 WVM 18 WVM N09 N3 N 0 1 Y N N -44.441 -29.159 4.752 -0.396 2.444 -0.143 N09 WVM 19 WVM N11 N4 N 0 1 Y N N -45.739 -29.176 6.616 -2.670 2.481 -0.509 N11 WVM 20 WVM O03 O1 O 0 1 N N N -51.312 -29.516 5.016 -6.384 -0.570 0.815 O03 WVM 21 WVM O22 O2 O 0 1 N N N -45.313 -30.446 -0.017 4.377 -2.332 -0.352 O22 WVM 22 WVM O23 O3 O 0 1 N N N -46.681 -29.546 -1.486 2.330 -2.782 0.350 O23 WVM 23 WVM H101 H1 H 0 0 N N N -43.710 -29.312 6.686 -1.446 4.140 -0.694 H101 WVM 24 WVM H131 H2 H 0 0 N N N -43.423 -29.347 1.679 1.846 2.092 -0.370 H131 WVM 25 WVM H132 H3 H 0 0 N N N -43.619 -27.867 2.679 1.983 1.947 1.411 H132 WVM 26 WVM H151 H4 H 0 0 N N N -44.102 -25.911 1.895 5.087 0.443 -0.668 H151 WVM 27 WVM H152 H5 H 0 0 N N N -45.387 -25.652 0.668 4.307 2.081 -0.570 H152 WVM 28 WVM H172 H6 H 0 0 N N N -43.864 -27.980 -1.420 3.147 0.076 2.469 H172 WVM 29 WVM H171 H7 H 0 0 N N N -42.578 -28.239 -0.193 4.258 -0.991 1.503 H171 WVM 30 WVM H202 H8 H 0 0 N N N -47.000 -27.679 2.119 0.662 -1.538 -0.155 H202 WVM 31 WVM H201 H9 H 0 0 N N N -47.280 -29.366 1.570 0.609 -0.329 -1.467 H201 WVM 32 WVM H011 H10 H 0 0 N N N -49.443 -31.139 7.239 -6.733 -3.121 0.127 H011 WVM 33 WVM H012 H11 H 0 0 N N N -50.894 -30.132 7.569 -5.080 -3.375 -0.482 H012 WVM 34 WVM H013 H12 H 0 0 N N N -51.046 -31.636 6.599 -5.345 -2.988 1.235 H013 WVM 35 WVM H021 H13 H 0 0 N N N -49.598 -30.609 4.812 -5.928 -1.134 -1.119 H021 WVM 36 WVM H041 H14 H 0 0 N N N -48.967 -28.215 4.836 -3.773 -1.055 1.041 H041 WVM 37 WVM H042 H15 H 0 0 N N N -49.826 -27.951 6.391 -3.508 -1.443 -0.675 H042 WVM 38 WVM H071 H16 H 0 0 N N N -47.619 -29.064 3.899 -1.689 -0.588 0.336 H071 WVM 39 WVM H161 H17 H 0 0 N N N -42.427 -25.833 0.157 5.788 0.919 1.632 H161 WVM 40 WVM H162 H18 H 0 0 N N N -43.713 -25.574 -1.070 4.418 2.086 1.880 H162 WVM 41 WVM H051 H19 H 0 0 N N N -47.983 -28.450 7.283 -4.806 1.060 -0.519 H051 WVM 42 WVM H031 H20 H 0 0 N N N -51.882 -30.255 4.837 -7.323 -0.797 0.790 H031 WVM 43 WVM H1 H21 H 0 1 N N N -45.403 -31.201 -0.586 4.652 -3.207 -0.044 H1 WVM 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WVM O23 C21 DOUB N N 1 WVM C21 O22 SING N N 2 WVM C21 C18 SING N N 3 WVM C17 C16 SING N N 4 WVM C17 C14 SING N N 5 WVM C16 C15 SING N N 6 WVM F19 C18 SING N N 7 WVM C18 C14 SING N N 8 WVM C18 C20 SING N N 9 WVM C14 C15 SING N N 10 WVM C14 C13 SING N N 11 WVM C20 N12 SING N N 12 WVM C13 N12 SING N N 13 WVM N12 C08 SING N N 14 WVM C08 C07 DOUB Y N 15 WVM C08 N09 SING Y N 16 WVM C07 C06 SING Y N 17 WVM N09 C10 DOUB Y N 18 WVM O03 C02 SING N N 19 WVM C02 C04 SING N N 20 WVM C02 C01 SING N N 21 WVM C04 N05 SING N N 22 WVM C06 N05 SING N N 23 WVM C06 N11 DOUB Y N 24 WVM C10 N11 SING Y N 25 WVM C10 H101 SING N N 26 WVM C13 H131 SING N N 27 WVM C13 H132 SING N N 28 WVM C15 H151 SING N N 29 WVM C15 H152 SING N N 30 WVM C17 H172 SING N N 31 WVM C17 H171 SING N N 32 WVM C20 H202 SING N N 33 WVM C20 H201 SING N N 34 WVM C01 H011 SING N N 35 WVM C01 H012 SING N N 36 WVM C01 H013 SING N N 37 WVM C02 H021 SING N N 38 WVM C04 H041 SING N N 39 WVM C04 H042 SING N N 40 WVM C07 H071 SING N N 41 WVM C16 H161 SING N N 42 WVM C16 H162 SING N N 43 WVM N05 H051 SING N N 44 WVM O03 H031 SING N N 45 WVM O22 H1 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WVM SMILES ACDLabs 12.01 "c3nc(NCC(C)O)cc(N2CC1(CCC1)C(C2)(C(O)=O)F)n3" WVM InChI InChI 1.03 "InChI=1S/C15H21FN4O3/c1-10(21)6-17-11-5-12(19-9-18-11)20-7-14(3-2-4-14)15(16,8-20)13(22)23/h5,9-10,21H,2-4,6-8H2,1H3,(H,22,23)(H,17,18,19)/t10-,15+/m1/s1" WVM InChIKey InChI 1.03 VUGBTOAPDMYPIQ-BMIGLBTASA-N WVM SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)CNc1cc(ncn1)N2CC3(CCC3)[C@](F)(C2)C(O)=O" WVM SMILES CACTVS 3.385 "C[CH](O)CNc1cc(ncn1)N2CC3(CCC3)[C](F)(C2)C(O)=O" WVM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CNc1cc(ncn1)N2C[C@@](C3(C2)CCC3)(C(=O)O)F)O" WVM SMILES "OpenEye OEToolkits" 2.0.7 "CC(CNc1cc(ncn1)N2CC3(CCC3)C(C2)(C(=O)O)F)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WVM "SYSTEMATIC NAME" ACDLabs 12.01 "(8S)-8-fluoro-6-(6-{[(2R)-2-hydroxypropyl]amino}pyrimidin-4-yl)-6-azaspiro[3.4]octane-8-carboxylic acid" WVM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(8~{S})-8-fluoranyl-6-[6-[[(2~{R})-2-oxidanylpropyl]amino]pyrimidin-4-yl]-6-azaspiro[3.4]octane-8-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WVM "Create component" 2020-11-17 RCSB WVM "Initial release" 2022-07-13 RCSB #