data_WVN
#
_chem_comp.id WVN
_chem_comp.name "1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H56"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ALPHA-CAROTENE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-10-17
_chem_comp.pdbx_modified_date 2024-06-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 536.873
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code WVN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8WM6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WVN C10 C1 C 0 1 N N N N N N 174.525 206.104 141.215 -13.875 0.038 0.500 C10 WVN 1
WVN C11 C2 C 0 1 N N N N N N 159.900 210.128 123.958 10.133 -0.064 0.196 C11 WVN 2
WVN C12 C3 C 0 1 N N N N N N 175.779 206.955 141.375 -13.727 -1.390 1.039 C12 WVN 3
WVN C13 C4 C 0 1 N N N N N N 174.786 206.249 138.750 -11.464 -0.154 -0.069 C13 WVN 4
WVN C14 C5 C 0 1 N N N N N N 176.218 207.736 140.139 -12.882 -2.198 0.052 C14 WVN 5
WVN C01 C6 C 0 1 N N N N N N 158.224 210.565 122.145 12.250 -0.692 -0.930 C01 WVN 6
WVN C02 C7 C 0 1 N N R N N N 159.388 209.699 122.583 11.448 0.461 -0.321 C02 WVN 7
WVN C03 C8 C 0 1 N N N N N N 157.170 210.559 123.246 12.726 -1.606 0.205 C03 WVN 8
WVN C04 C9 C 0 1 N N N N N N 156.705 209.141 123.578 13.751 -0.840 1.045 C04 WVN 9
WVN C05 C10 C 0 1 N N N N N N 158.854 208.283 122.685 12.215 1.081 0.810 C05 WVN 10
WVN C06 C11 C 0 1 N N N N N N 174.555 205.316 139.915 -12.509 0.723 0.558 C06 WVN 11
WVN C07 C12 C 0 1 N N N N N N 158.693 211.981 121.863 11.360 -1.485 -1.890 C07 WVN 12
WVN C08 C13 C 0 1 N N N N N N 157.634 209.971 120.875 13.459 -0.135 -1.684 C08 WVN 13
WVN C09 C14 C 0 1 N N N N N N 157.795 208.076 123.420 13.214 0.514 1.407 C09 WVN 14
WVN C15 C15 C 0 1 N N N N N N 175.632 207.255 138.817 -11.628 -1.447 -0.289 C15 WVN 15
WVN C16 C16 C 0 1 N N N N N N 159.300 207.204 121.701 11.797 2.451 1.280 C16 WVN 16
WVN C17 C17 C 0 1 N N N N N N 173.210 204.644 139.708 -12.137 0.992 2.017 C17 WVN 17
WVN C18 C18 C 0 1 N N N N N N 175.634 204.249 140.002 -12.575 2.052 -0.199 C18 WVN 18
WVN C19 C19 C 0 1 N N N N N N 161.100 209.739 124.330 8.985 0.416 -0.292 C19 WVN 19
WVN C20 C20 C 0 1 N N N N N N 173.784 206.152 137.619 -10.232 0.438 -0.445 C20 WVN 20
WVN C21 C21 C 0 1 N N N N N N 175.913 208.086 137.568 -10.491 -2.211 -0.918 C21 WVN 21
WVN C22 C22 C 0 1 N N N N N N 161.757 210.059 125.660 7.748 -0.078 0.193 C22 WVN 22
WVN C23 C23 C 0 1 N N N N N N 174.112 205.397 136.623 -9.064 -0.049 0.051 C23 WVN 23
WVN C24 C24 C 0 1 N N N N N N 161.146 211.057 126.629 7.727 -1.142 1.260 C24 WVN 24
WVN C25 C25 C 0 1 N N N N N N 173.211 205.194 135.441 -7.838 0.440 -0.431 C25 WVN 25
WVN C26 C26 C 0 1 N N N N N N 162.878 209.429 125.926 6.580 0.410 -0.303 C26 WVN 26
WVN C27 C27 C 0 1 N N N N N N 173.237 203.832 134.784 -7.817 1.504 -1.497 C27 WVN 27
WVN C28 C28 C 0 1 N N N N N N 172.433 206.144 135.008 -6.665 -0.050 0.068 C28 WVN 28
WVN C29 C29 C 0 1 N N N N N N 163.694 209.599 127.199 5.353 -0.079 0.179 C29 WVN 29
WVN C30 C30 C 0 1 N N N N N N 171.571 205.853 133.799 -5.441 0.438 -0.412 C30 WVN 30
WVN C31 C31 C 0 1 N N N N N N 164.623 208.725 127.474 4.181 0.410 -0.320 C31 WVN 31
WVN C32 C32 C 0 1 N N N N N N 165.476 208.843 128.730 2.957 -0.077 0.161 C32 WVN 32
WVN C33 C33 C 0 1 N N N N N N 170.820 206.779 133.271 -4.259 -0.056 0.090 C33 WVN 33
WVN C34 C34 C 0 1 N N N N N N 169.989 206.472 132.041 -3.037 0.431 -0.389 C34 WVN 34
WVN C35 C35 C 0 1 N N N N N N 165.078 209.851 129.806 2.937 -1.142 1.227 C35 WVN 35
WVN C36 C36 C 0 1 N N N N N N 166.526 208.054 128.868 1.774 0.417 -0.342 C36 WVN 36
WVN C37 C37 C 0 1 N N N N N N 169.040 207.300 131.707 -1.853 -0.063 0.114 C37 WVN 37
WVN C38 C38 C 0 1 N N N N N N 170.276 205.243 131.199 -3.016 1.496 -1.456 C38 WVN 38
WVN C39 C39 C 0 1 N N N N N N 167.433 208.109 130.087 0.553 -0.070 0.137 C39 WVN 39
WVN C40 C40 C 0 1 N N N N N N 168.165 207.100 130.479 -0.631 0.424 -0.366 C40 WVN 40
WVN H101 H1 H 0 0 N N N N N N 173.643 206.762 141.215 -14.225 0.005 -0.532 H101 WVN 41
WVN H102 H2 H 0 0 N N N N N N 174.459 205.401 142.059 -14.590 0.588 1.112 H102 WVN 42
WVN H111 H3 H 0 0 N N N N N N 159.290 210.737 124.609 10.119 -0.827 0.960 H111 WVN 43
WVN H121 H4 H 0 0 N N N N N N 175.594 207.679 142.183 -13.232 -1.365 2.010 H121 WVN 44
WVN H122 H5 H 0 0 N N N N N N 176.605 206.287 141.663 -14.712 -1.848 1.139 H122 WVN 45
WVN H142 H6 H 0 0 N N N N N N 175.922 208.786 140.279 -12.620 -3.156 0.500 H142 WVN 46
WVN H141 H7 H 0 0 N N N N N N 177.314 207.670 140.068 -13.458 -2.372 -0.858 H141 WVN 47
WVN H021 H8 H 0 0 N N N N N N 160.201 209.748 121.843 11.260 1.214 -1.085 H021 WVN 48
WVN H031 H9 H 0 0 N N N N N N 157.598 211.015 124.151 11.878 -1.888 0.829 H031 WVN 49
WVN H032 H10 H 0 0 N N N N N N 156.304 211.149 122.913 13.190 -2.499 -0.213 H032 WVN 50
WVN H041 H11 H 0 0 N N N N N N 156.356 209.127 124.621 13.962 -1.400 1.956 H041 WVN 51
WVN H042 H12 H 0 0 N N N N N N 155.871 208.885 122.908 14.671 -0.723 0.474 H042 WVN 52
WVN H073 H13 H 0 0 N N N N N N 157.837 212.595 121.547 11.008 -0.828 -2.686 H073 WVN 53
WVN H071 H14 H 0 0 N N N N N N 159.134 212.409 122.775 11.934 -2.305 -2.323 H071 WVN 54
WVN H072 H15 H 0 0 N N N N N N 159.448 211.965 121.063 10.506 -1.887 -1.346 H072 WVN 55
WVN H081 H16 H 0 0 N N N N N N 156.786 210.587 120.541 14.093 0.421 -0.994 H081 WVN 56
WVN H083 H17 H 0 0 N N N N N N 158.403 209.949 120.089 14.028 -0.958 -2.117 H083 WVN 57
WVN H082 H18 H 0 0 N N N N N N 157.286 208.947 121.076 13.118 0.529 -2.479 H082 WVN 58
WVN H091 H19 H 0 0 N N N N N N 157.685 207.130 123.929 13.690 1.048 2.216 H091 WVN 59
WVN H163 H20 H 0 0 N N N N N N 158.801 206.255 121.946 11.049 2.352 2.067 H163 WVN 60
WVN H161 H21 H 0 0 N N N N N N 159.031 207.507 120.678 12.665 2.983 1.669 H161 WVN 61
WVN H162 H22 H 0 0 N N N N N N 160.390 207.073 121.770 11.373 3.008 0.444 H162 WVN 62
WVN H173 H23 H 0 0 N N N N N N 173.226 204.072 138.768 -12.094 0.048 2.561 H173 WVN 63
WVN H172 H24 H 0 0 N N N N N N 173.007 203.963 140.548 -11.164 1.481 2.060 H172 WVN 64
WVN H171 H25 H 0 0 N N N N N N 172.422 205.410 139.658 -12.889 1.639 2.470 H171 WVN 65
WVN H183 H26 H 0 0 N N N N N N 175.660 203.676 139.064 -13.285 2.716 0.295 H183 WVN 66
WVN H181 H27 H 0 0 N N N N N N 176.611 204.728 140.166 -11.589 2.516 -0.206 H181 WVN 67
WVN H182 H28 H 0 0 N N N N N N 175.413 203.571 140.840 -12.900 1.871 -1.223 H182 WVN 68
WVN H191 H29 H 0 0 N N N N N N 161.665 209.142 123.630 9.000 1.179 -1.057 H191 WVN 69
WVN H201 H30 H 0 0 N N N N N N 172.845 206.685 137.643 -10.221 1.276 -1.126 H201 WVN 70
WVN H211 H31 H 0 0 N N N N N N 176.638 208.877 137.809 -9.826 -2.580 -0.138 H211 WVN 71
WVN H213 H32 H 0 0 N N N N N N 176.326 207.437 136.781 -10.889 -3.053 -1.485 H213 WVN 72
WVN H212 H33 H 0 0 N N N N N N 174.977 208.543 137.213 -9.937 -1.553 -1.587 H212 WVN 73
WVN H231 H34 H 0 0 N N N N N N 175.068 204.895 136.642 -9.079 -0.812 0.815 H231 WVN 74
WVN H241 H35 H 0 0 N N N N N N 161.781 211.136 127.523 7.718 -0.671 2.243 H241 WVN 75
WVN H243 H36 H 0 0 N N N N N N 161.072 212.041 126.143 6.835 -1.757 1.142 H243 WVN 76
WVN H242 H37 H 0 0 N N N N N N 160.142 210.716 126.922 8.615 -1.768 1.166 H242 WVN 77
WVN H261 H38 H 0 0 N N N N N N 163.249 208.737 125.184 6.595 1.173 -1.067 H261 WVN 78
WVN H273 H39 H 0 0 N N N N N N 172.535 203.819 133.937 -7.817 2.488 -1.028 H273 WVN 79
WVN H272 H40 H 0 0 N N N N N N 174.253 203.619 134.421 -6.920 1.392 -2.106 H272 WVN 80
WVN H271 H41 H 0 0 N N N N N N 172.941 203.066 135.516 -8.699 1.403 -2.129 H271 WVN 81
WVN H281 H42 H 0 0 N N N N N N 172.404 207.107 135.495 -6.680 -0.813 0.832 H281 WVN 82
WVN H291 H43 H 0 0 N N N N N N 163.507 210.429 127.864 5.339 -0.842 0.943 H291 WVN 83
WVN H301 H44 H 0 0 N N N N N N 171.578 204.863 133.367 -5.427 1.201 -1.177 H301 WVN 84
WVN H311 H45 H 0 0 N N N N N N 164.791 207.901 126.797 4.195 1.173 -1.084 H311 WVN 85
WVN H331 H46 H 0 0 N N N N N N 170.790 207.765 133.710 -4.273 -0.819 0.855 H331 WVN 86
WVN H351 H47 H 0 0 N N N N N N 165.797 209.804 130.637 2.927 -0.671 2.210 H351 WVN 87
WVN H353 H48 H 0 0 N N N N N N 165.078 210.864 129.377 2.045 -1.757 1.110 H353 WVN 88
WVN H352 H49 H 0 0 N N N N N N 164.071 209.611 130.179 3.824 -1.768 1.133 H352 WVN 89
WVN H361 H50 H 0 0 N N N N N N 166.749 207.343 128.086 1.789 1.179 -1.107 H361 WVN 90
WVN H371 H51 H 0 0 N N N N N N 168.867 208.166 132.329 -1.867 -0.826 0.878 H371 WVN 91
WVN H383 H52 H 0 0 N N N N N N 169.568 205.200 130.358 -3.016 2.480 -0.987 H383 WVN 92
WVN H382 H53 H 0 0 N N N N N N 171.304 205.297 130.810 -2.119 1.383 -2.064 H382 WVN 93
WVN H381 H54 H 0 0 N N N N N N 170.165 204.341 131.818 -3.899 1.394 -2.088 H381 WVN 94
WVN H391 H55 H 0 0 N N N N N N 167.474 209.026 130.656 0.538 -0.833 0.902 H391 WVN 95
WVN H401 H56 H 0 0 N N N N N N 168.149 206.158 129.950 -0.617 1.187 -1.130 H401 WVN 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WVN C01 C02 SING N N 1
WVN C01 C03 SING N N 2
WVN C01 C07 SING N N 3
WVN C01 C08 SING N N 4
WVN C02 C05 SING N N 5
WVN C02 C11 SING N N 6
WVN C03 C04 SING N N 7
WVN C04 C09 SING N N 8
WVN C05 C09 DOUB N N 9
WVN C05 C16 SING N N 10
WVN C06 C10 SING N N 11
WVN C06 C13 SING N N 12
WVN C06 C17 SING N N 13
WVN C06 C18 SING N N 14
WVN C10 C12 SING N N 15
WVN C11 C19 DOUB N E 16
WVN C12 C14 SING N N 17
WVN C13 C15 DOUB N N 18
WVN C13 C20 SING N N 19
WVN C14 C15 SING N N 20
WVN C15 C21 SING N N 21
WVN C19 C22 SING N N 22
WVN C20 C23 DOUB N E 23
WVN C22 C24 SING N N 24
WVN C22 C26 DOUB N E 25
WVN C23 C25 SING N N 26
WVN C25 C27 SING N N 27
WVN C25 C28 DOUB N E 28
WVN C26 C29 SING N N 29
WVN C28 C30 SING N N 30
WVN C29 C31 DOUB N E 31
WVN C30 C33 DOUB N E 32
WVN C31 C32 SING N N 33
WVN C32 C35 SING N N 34
WVN C32 C36 DOUB N E 35
WVN C33 C34 SING N N 36
WVN C34 C37 DOUB N E 37
WVN C34 C38 SING N N 38
WVN C36 C39 SING N N 39
WVN C37 C40 SING N N 40
WVN C39 C40 DOUB N E 41
WVN C10 H101 SING N N 42
WVN C10 H102 SING N N 43
WVN C11 H111 SING N N 44
WVN C12 H121 SING N N 45
WVN C12 H122 SING N N 46
WVN C14 H142 SING N N 47
WVN C14 H141 SING N N 48
WVN C02 H021 SING N N 49
WVN C03 H031 SING N N 50
WVN C03 H032 SING N N 51
WVN C04 H041 SING N N 52
WVN C04 H042 SING N N 53
WVN C07 H073 SING N N 54
WVN C07 H071 SING N N 55
WVN C07 H072 SING N N 56
WVN C08 H081 SING N N 57
WVN C08 H083 SING N N 58
WVN C08 H082 SING N N 59
WVN C09 H091 SING N N 60
WVN C16 H163 SING N N 61
WVN C16 H161 SING N N 62
WVN C16 H162 SING N N 63
WVN C17 H173 SING N N 64
WVN C17 H172 SING N N 65
WVN C17 H171 SING N N 66
WVN C18 H183 SING N N 67
WVN C18 H181 SING N N 68
WVN C18 H182 SING N N 69
WVN C19 H191 SING N N 70
WVN C20 H201 SING N N 71
WVN C21 H211 SING N N 72
WVN C21 H213 SING N N 73
WVN C21 H212 SING N N 74
WVN C23 H231 SING N N 75
WVN C24 H241 SING N N 76
WVN C24 H243 SING N N 77
WVN C24 H242 SING N N 78
WVN C26 H261 SING N N 79
WVN C27 H273 SING N N 80
WVN C27 H272 SING N N 81
WVN C27 H271 SING N N 82
WVN C28 H281 SING N N 83
WVN C29 H291 SING N N 84
WVN C30 H301 SING N N 85
WVN C31 H311 SING N N 86
WVN C33 H331 SING N N 87
WVN C35 H351 SING N N 88
WVN C35 H353 SING N N 89
WVN C35 H352 SING N N 90
WVN C36 H361 SING N N 91
WVN C37 H371 SING N N 92
WVN C38 H383 SING N N 93
WVN C38 H382 SING N N 94
WVN C38 H381 SING N N 95
WVN C39 H391 SING N N 96
WVN C40 H401 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WVN InChI InChI 1.06 "InChI=1S/C40H56/c1-31(19-13-21-33(3)25-27-37-35(5)23-15-29-39(37,7)8)17-11-12-18-32(2)20-14-22-34(4)26-28-38-36(6)24-16-30-40(38,9)10/h11-14,17-23,25-28,37H,15-16,24,29-30H2,1-10H3/b12-11+,19-13+,20-14+,27-25+,28-26+,31-17+,32-18+,33-21+,34-22+/t37-/m0/s1"
WVN InChIKey InChI 1.06 ANVAOWXLWRTKGA-NTXLUARGSA-N
WVN SMILES_CANONICAL CACTVS 3.385 "CC(=C\C=C\C=C(C)\C=C\C=C(C)\C=C\C1=C(C)CCCC1(C)C)/C=C/C=C(C)/C=C/[C@H]2C(=CCCC2(C)C)C"
WVN SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C)C=CC=C(C)C=C[CH]2C(=CCCC2(C)C)C"
WVN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=CCCC2(C)C)C)/C)/C"
WVN SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CCC1)(C)C)C=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CCCC2(C)C)C)C)C"
#
_pdbx_chem_comp_identifier.comp_id WVN
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "1,3,3-trimethyl-2-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{R})-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id WVN
_pdbx_chem_comp_synonyms.name ALPHA-CAROTENE
_pdbx_chem_comp_synonyms.provenance PUBCHEM
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WVN "Create component" 2023-10-17 PDBJ
WVN "Initial release" 2024-05-29 RCSB
WVN "Modify descriptor" 2024-06-19 PDBJ
#