data_WWE # _chem_comp.id WWE _chem_comp.name "3-dodecylsulfanyl-3-methyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H34 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-16 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.516 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WWE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QT0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WWE C11 C1 C 0 1 N N N N N N 3.907 12.848 9.710 -6.822 1.046 -0.117 C11 WWE 1 WWE C12 C2 C 0 1 N N N N N N 3.802 14.357 9.730 -6.639 -0.350 0.421 C12 WWE 2 WWE C13 C3 C 0 1 N N N N N N 2.544 14.918 9.027 -5.288 -0.901 -0.042 C13 WWE 3 WWE C21 C4 C 0 1 N N N N N N -1.059 21.705 7.670 2.532 -0.469 -0.176 C21 WWE 4 WWE C14 C5 C 0 1 N N N N N N 2.612 14.629 7.530 -5.119 -2.333 0.471 C14 WWE 5 WWE C17 C6 C 0 1 N N N N N N 1.169 17.351 8.606 -2.459 -0.661 -0.032 C17 WWE 6 WWE C18 C7 C 0 1 N N N N N N 1.232 18.844 8.816 -1.224 0.109 0.440 C18 WWE 7 WWE C19 C8 C 0 1 N N N N N N 0.077 19.532 8.154 0.036 -0.565 -0.104 C19 WWE 8 WWE C20 C9 C 0 1 N N N N N N 0.150 21.023 8.263 1.271 0.205 0.368 C20 WWE 9 WWE C15 C10 C 0 1 N N N N N N 1.271 14.329 9.631 -5.233 -0.898 -1.571 C15 WWE 10 WWE C22 C11 C 0 1 N N N N N N -0.931 23.198 7.734 3.767 0.301 0.296 C22 WWE 11 WWE C23 C12 C 0 1 N N N N N N -0.596 23.672 9.122 5.028 -0.373 -0.249 C23 WWE 12 WWE C24 C13 C 0 1 N N N N N N 0.332 24.870 9.146 6.262 0.397 0.223 C24 WWE 13 WWE C25 C14 C 0 1 N N N N N N 1.098 24.993 10.445 7.523 -0.277 -0.321 C25 WWE 14 WWE C26 C15 C 0 1 N N N N N N 2.404 25.747 10.295 8.758 0.493 0.151 C26 WWE 15 WWE C27 C16 C 0 1 N N N N N N 3.165 25.796 11.591 10.019 -0.181 -0.393 C27 WWE 16 WWE C28 C17 C 0 1 N N N N N N 3.143 24.453 12.284 11.253 0.589 0.079 C28 WWE 17 WWE O29 O1 O 0 1 N N N N N N 3.376 12.149 10.568 -5.914 1.594 -0.695 O29 WWE 18 WWE S16 S1 S 0 1 N N N N N N 2.642 16.692 9.431 -3.954 0.138 0.613 S16 WWE 19 WWE H2 H2 H 0 1 N N N N N N 4.690 14.771 9.229 -6.668 -0.327 1.510 H2 WWE 20 WWE H3 H3 H 0 1 N N N N N N 3.786 14.687 10.779 -7.439 -0.990 0.049 H3 WWE 21 WWE H4 H4 H 0 1 N N N N N N -1.954 21.398 8.231 2.582 -1.495 0.189 H4 WWE 22 WWE H5 H5 H 0 1 N N N N N N -1.163 21.399 6.618 2.500 -0.473 -1.266 H5 WWE 23 WWE H6 H6 H 0 1 N N N N N N 2.547 13.544 7.362 -5.158 -2.335 1.561 H6 WWE 24 WWE H7 H7 H 0 1 N N N N N N 1.774 15.129 7.022 -5.920 -2.957 0.077 H7 WWE 25 WWE H8 H8 H 0 1 N N N N N N 3.563 15.006 7.127 -4.157 -2.725 0.142 H8 WWE 26 WWE H9 H9 H 0 1 N N N N N N 0.256 16.936 9.058 -2.491 -0.665 -1.121 H9 WWE 27 WWE H10 H10 H 0 1 N N N N N N 1.188 17.111 7.533 -2.409 -1.687 0.334 H10 WWE 28 WWE H11 H11 H 0 1 N N N N N N 2.171 19.227 8.389 -1.275 1.135 0.075 H11 WWE 29 WWE H12 H12 H 0 1 N N N N N N 1.206 19.056 9.895 -1.193 0.113 1.530 H12 WWE 30 WWE H13 H13 H 0 1 N N N N N N -0.855 19.190 8.629 0.086 -1.591 0.261 H13 WWE 31 WWE H14 H14 H 0 1 N N N N N N 0.068 19.258 7.089 0.005 -0.569 -1.194 H14 WWE 32 WWE H15 H15 H 0 1 N N N N N N 1.048 21.372 7.732 1.303 0.209 1.457 H15 WWE 33 WWE H16 H16 H 0 1 N N N N N N 0.223 21.296 9.326 1.221 1.231 0.002 H16 WWE 34 WWE H17 H17 H 0 1 N N N N N N 1.241 14.548 10.709 -4.323 -1.398 -1.903 H17 WWE 35 WWE H18 H18 H 0 1 N N N N N N 0.393 14.775 9.142 -6.102 -1.424 -1.967 H18 WWE 36 WWE H19 H19 H 0 1 N N N N N N 1.262 13.240 9.478 -5.235 0.130 -1.933 H19 WWE 37 WWE H20 H20 H 0 1 N N N N N N -0.133 23.517 7.047 3.717 1.327 -0.070 H20 WWE 38 WWE H21 H21 H 0 1 N N N N N N -1.884 23.651 7.424 3.798 0.305 1.385 H21 WWE 39 WWE H22 H22 H 0 1 N N N N N N -1.532 23.947 9.631 5.077 -1.399 0.117 H22 WWE 40 WWE H23 H23 H 0 1 N N N N N N -0.112 22.846 9.664 4.996 -0.377 -1.338 H23 WWE 41 WWE H24 H24 H 0 1 N N N N N N 1.053 24.773 8.321 6.212 1.423 -0.142 H24 WWE 42 WWE H25 H25 H 0 1 N N N N N N -0.267 25.781 9.004 6.294 0.401 1.313 H25 WWE 43 WWE H26 H26 H 0 1 N N N N N N 0.468 25.524 11.174 7.573 -1.303 0.045 H26 WWE 44 WWE H27 H27 H 0 1 N N N N N N 1.318 23.982 10.819 7.492 -0.281 -1.411 H27 WWE 45 WWE H28 H28 H 0 1 N N N N N N 3.022 25.244 9.537 8.708 1.519 -0.214 H28 WWE 46 WWE H29 H29 H 0 1 N N N N N N 2.188 26.775 9.969 8.789 0.497 1.241 H29 WWE 47 WWE H30 H30 H 0 1 N N N N N N 4.208 26.077 11.385 10.069 -1.207 -0.028 H30 WWE 48 WWE H31 H31 H 0 1 N N N N N N 2.706 26.548 12.249 9.987 -0.185 -1.483 H31 WWE 49 WWE H32 H32 H 0 1 N N N N N N 3.706 24.517 13.227 11.203 1.615 -0.287 H32 WWE 50 WWE H33 H33 H 0 1 N N N N N N 2.102 24.167 12.497 11.285 0.593 1.168 H33 WWE 51 WWE H34 H34 H 0 1 N N N N N N 3.605 23.697 11.632 12.152 0.109 -0.309 H34 WWE 52 WWE O1 O2 O 0 1 N Y N N N N 4.628 12.346 8.710 -7.996 1.677 0.043 O1 WWE 53 WWE H1 H1 H 0 1 N Y N N N N 4.653 11.399 8.781 -8.066 2.571 -0.319 H1 WWE 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WWE C14 C13 SING N N 1 WWE C21 C22 SING N N 2 WWE C21 C20 SING N N 3 WWE C22 C23 SING N N 4 WWE C19 C20 SING N N 5 WWE C19 C18 SING N N 6 WWE C17 C18 SING N N 7 WWE C17 S16 SING N N 8 WWE C13 S16 SING N N 9 WWE C13 C15 SING N N 10 WWE C13 C12 SING N N 11 WWE C23 C24 SING N N 12 WWE C24 C25 SING N N 13 WWE C11 C12 SING N N 14 WWE C11 O29 DOUB N N 15 WWE C26 C25 SING N N 16 WWE C26 C27 SING N N 17 WWE C27 C28 SING N N 18 WWE C12 H2 SING N N 19 WWE C12 H3 SING N N 20 WWE C21 H4 SING N N 21 WWE C21 H5 SING N N 22 WWE C14 H6 SING N N 23 WWE C14 H7 SING N N 24 WWE C14 H8 SING N N 25 WWE C17 H9 SING N N 26 WWE C17 H10 SING N N 27 WWE C18 H11 SING N N 28 WWE C18 H12 SING N N 29 WWE C19 H13 SING N N 30 WWE C19 H14 SING N N 31 WWE C20 H15 SING N N 32 WWE C20 H16 SING N N 33 WWE C15 H17 SING N N 34 WWE C15 H18 SING N N 35 WWE C15 H19 SING N N 36 WWE C22 H20 SING N N 37 WWE C22 H21 SING N N 38 WWE C23 H22 SING N N 39 WWE C23 H23 SING N N 40 WWE C24 H24 SING N N 41 WWE C24 H25 SING N N 42 WWE C25 H26 SING N N 43 WWE C25 H27 SING N N 44 WWE C26 H28 SING N N 45 WWE C26 H29 SING N N 46 WWE C27 H30 SING N N 47 WWE C27 H31 SING N N 48 WWE C28 H32 SING N N 49 WWE C28 H33 SING N N 50 WWE C28 H34 SING N N 51 WWE C11 O1 SING N N 52 WWE O1 H1 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WWE InChI InChI 1.06 "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-17(2,3)15-16(18)19/h4-15H2,1-3H3,(H,18,19)" WWE InChIKey InChI 1.06 FVOHTIJLQOWWCZ-UHFFFAOYSA-N WWE SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCSC(C)(C)CC(O)=O" WWE SMILES CACTVS 3.385 "CCCCCCCCCCCCSC(C)(C)CC(O)=O" WWE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)(C)CC(=O)O" WWE SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSC(C)(C)CC(=O)O" # _pdbx_chem_comp_identifier.comp_id WWE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-dodecylsulfanyl-3-methyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WWE "Create component" 2023-10-16 PDBE WWE "Modify PCM" 2024-09-27 PDBE WWE "Initial release" 2024-10-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WWE _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #