data_WY4 # _chem_comp.id WY4 _chem_comp.name "7-(5,6-DIHYDRO-8H-IMIDAZO[2,1-C][1,4]OXAZIN-2-YL)-6-FORMYL-2,7-DIHYDRO- [1,4]THIAZEPINE-3-CARBOXYLIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N3 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-03-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.325 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WY4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ONG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WY4 S1 S1 S 0 1 N N N N N N 5.515 36.188 4.243 -0.679 3.987 1.679 S1 WY4 1 WY4 C2 C2 C 0 1 N N N N N N 6.135 37.782 3.919 -1.407 3.328 3.197 C2 WY4 2 WY4 C3 C3 C 0 1 N N N N N N 7.243 38.358 4.425 -0.277 3.061 4.147 C3 WY4 3 WY4 N4 N4 N 0 1 N N N N N N 8.202 37.690 5.199 0.546 2.065 4.115 N4 WY4 4 WY4 C5 C5 C 0 1 N N N N N N 8.476 36.418 5.561 0.379 1.107 3.153 C5 WY4 5 WY4 C6 C6 C 0 1 N N N N N N 7.915 35.251 5.162 0.230 1.261 1.826 C6 WY4 6 WY4 C7 C7 C 0 1 N N N N N N 8.491 34.116 5.848 0.122 -0.017 1.091 C7 WY4 7 WY4 O8 O8 O 0 1 N N N N N N 9.482 34.261 6.530 -0.018 -0.058 -0.118 O8 WY4 8 WY4 C31 C31 C 0 1 N N N N N N 7.506 39.730 4.128 -0.043 4.068 5.222 C31 WY4 9 WY4 O32 O32 O 0 1 N N N N N N 8.609 40.164 4.415 0.687 5.016 5.096 O32 WY4 10 WY4 O33 O33 O 0 1 N N N N N N 6.548 40.438 3.533 -0.769 3.722 6.295 O33 WY4 11 WY4 C61 C61 C 0 1 N N R N N N 6.876 35.050 4.113 0.145 2.507 0.973 C61 WY4 12 WY4 C62 C62 C 0 1 Y N N N N N 7.550 34.974 2.720 1.485 2.887 0.380 C62 WY4 13 WY4 N63 N63 N 0 1 Y N N N N N 8.494 34.049 2.407 2.531 3.253 1.196 N63 WY4 14 WY4 C64 C64 C 0 1 Y N N N N N 8.918 34.250 1.206 3.529 3.510 0.375 C64 WY4 15 WY4 N65 N65 N 0 1 Y N N N N N 8.242 35.346 0.675 3.146 3.322 -0.928 N65 WY4 16 WY4 C66 C66 C 0 1 Y N N N N N 7.387 35.781 1.621 1.847 2.923 -0.948 C66 WY4 17 WY4 C67 C67 C 0 1 N N N N N N 9.983 33.496 0.423 4.895 3.986 0.712 C67 WY4 18 WY4 O68 O68 O 0 1 N N N N N N 10.528 34.401 -0.561 5.782 3.753 -0.394 O68 WY4 19 WY4 C69 C69 C 0 1 N N N N N N 9.535 34.992 -1.393 5.271 4.289 -1.621 C69 WY4 20 WY4 C70 C70 C 0 1 N N N N N N 8.537 35.919 -0.660 4.049 3.484 -2.047 C70 WY4 21 WY4 HC21 1HC2 H 0 0 N N N N N N 6.239 37.846 2.810 -2.008 2.434 3.010 HC21 WY4 22 WY4 HC22 2HC2 H 0 0 N N N N N N 5.298 38.483 4.145 -2.071 4.086 3.624 HC22 WY4 23 WY4 HC5 HC5 H 0 1 N N N N N N 9.287 36.315 6.300 0.434 0.098 3.560 HC5 WY4 24 WY4 HC7 HC7 H 0 1 N N N N N N 8.150 33.066 5.851 0.177 -0.912 1.725 HC7 WY4 25 WY4 H61 H61 H 0 1 N N N N N N 6.378 34.066 4.278 -0.492 2.262 0.113 H61 WY4 26 WY4 H66 H66 H 0 1 N N N N N N 6.690 36.630 1.516 1.312 2.700 -1.860 H66 WY4 27 WY4 H671 1H67 H 0 0 N N N N N N 10.765 33.046 1.078 4.888 5.055 0.948 H671 WY4 28 WY4 H672 2H67 H 0 0 N N N N N N 9.602 32.548 -0.024 5.289 3.443 1.576 H672 WY4 29 WY4 H691 1H69 H 0 0 N N N N N N 10.015 35.535 -2.239 6.055 4.214 -2.381 H691 WY4 30 WY4 H692 2H69 H 0 0 N N N N N N 8.985 34.202 -1.956 5.033 5.351 -1.487 H692 WY4 31 WY4 H701 1H70 H 0 0 N N N N N N 7.613 36.106 -1.256 3.513 3.972 -2.867 H701 WY4 32 WY4 H702 2H70 H 0 0 N N N N N N 8.899 36.971 -0.600 4.341 2.472 -2.349 H702 WY4 33 WY4 HO1 HO1 H 0 1 N N N N N N 6.860 41.321 3.372 -0.641 4.363 7.026 HO1 WY4 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WY4 S1 C2 SING N N 1 WY4 S1 C61 SING N N 2 WY4 C2 C3 SING N N 3 WY4 C2 HC21 SING N N 4 WY4 C2 HC22 SING N N 5 WY4 C3 N4 DOUB N N 6 WY4 C3 C31 SING N N 7 WY4 N4 C5 SING N N 8 WY4 C5 C6 DOUB N N 9 WY4 C5 HC5 SING N N 10 WY4 C6 C7 SING N N 11 WY4 C6 C61 SING N N 12 WY4 C7 O8 DOUB N N 13 WY4 C7 HC7 SING N N 14 WY4 C31 O32 DOUB N N 15 WY4 C31 O33 SING N N 16 WY4 C61 C62 SING N N 17 WY4 C61 H61 SING N N 18 WY4 C62 N63 SING Y N 19 WY4 C62 C66 DOUB Y N 20 WY4 N63 C64 DOUB Y N 21 WY4 C64 N65 SING Y N 22 WY4 C64 C67 SING N N 23 WY4 N65 C66 SING Y N 24 WY4 N65 C70 SING N N 25 WY4 C66 H66 SING N N 26 WY4 C67 O68 SING N N 27 WY4 C67 H671 SING N N 28 WY4 C67 H672 SING N N 29 WY4 O68 C69 SING N N 30 WY4 C69 C70 SING N N 31 WY4 C69 H691 SING N N 32 WY4 C69 H692 SING N N 33 WY4 C70 H701 SING N N 34 WY4 C70 H702 SING N N 35 WY4 HO1 O33 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WY4 SMILES ACDLabs 10.04 "O=C(O)C1=NC=C(C=O)C(SC1)c2nc3n(c2)CCOC3" WY4 SMILES_CANONICAL CACTVS 3.341 "OC(=O)C1=NC=C(C=O)[C@@H](SC1)c2cn3CCOCc3n2" WY4 SMILES CACTVS 3.341 "OC(=O)C1=NC=C(C=O)[CH](SC1)c2cn3CCOCc3n2" WY4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(nc2n1CCOC2)[C@H]3C(=CN=C(CS3)C(=O)O)C=O" WY4 SMILES "OpenEye OEToolkits" 1.5.0 "c1c(nc2n1CCOC2)C3C(=CN=C(CS3)C(=O)O)C=O" WY4 InChI InChI 1.03 "InChI=1S/C13H13N3O4S/c17-5-8-3-14-10(13(18)19)7-21-12(8)9-4-16-1-2-20-6-11(16)15-9/h3-5,12H,1-2,6-7H2,(H,18,19)/t12-/m1/s1" WY4 InChIKey InChI 1.03 CTKODGPKPNVQNS-GFCCVEGCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier WY4 "SYSTEMATIC NAME" ACDLabs 10.04 "(7R)-7-(5,6-dihydro-8H-imidazo[2,1-c][1,4]oxazin-2-yl)-6-formyl-2,7-dihydro-1,4-thiazepine-3-carboxylic acid" WY4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(7R)-7-(6,8-dihydro-5H-imidazo[2,1-c][1,4]oxazin-2-yl)-6-methanoyl-2,7-dihydro-1,4-thiazepine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WY4 "Create component" 2003-03-05 RCSB WY4 "Modify descriptor" 2011-06-04 RCSB WY4 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id WY4 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C7 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #