data_WY8 # _chem_comp.id WY8 _chem_comp.name "9-[(1~{S},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 F2 N9 O8 P2 S2" _chem_comp.mon_nstd_parent_comp_id ADE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-23 _chem_comp.pdbx_modified_date 2023-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 693.537 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WY8 C10 C1 C 0 1 N N N N N N 20.574 44.180 66.278 -1.317 1.036 0.317 C10 WY8 1 WY8 C13 C2 C 0 1 N N R N N N 23.993 44.791 67.135 -4.474 -0.331 0.494 C13 WY8 2 WY8 C8 C3 C 0 1 Y N N N N N 24.300 43.876 64.793 -5.259 1.973 -0.168 C8 WY8 3 WY8 C5 C4 C 0 1 Y N N N N N 26.387 44.113 64.516 -7.334 1.604 -0.677 C5 WY8 4 WY8 C4 C5 C 0 1 Y N N N N N 26.108 44.612 65.774 -6.773 0.375 -0.292 C4 WY8 5 WY8 C1 C6 C 0 1 N N R N N N 18.854 46.751 63.240 2.157 -0.364 -0.800 C1 WY8 6 WY8 C2 C7 C 0 1 Y N N N N N 28.233 45.055 66.167 -8.796 -0.648 -0.673 C2 WY8 7 WY8 C6 C8 C 0 1 Y N N N N N 27.737 44.111 64.128 -8.686 1.625 -1.061 C6 WY8 8 WY8 C24 C9 C 0 1 N N R N N N 23.542 46.247 67.164 -3.815 -1.027 -0.706 C24 WY8 9 WY8 C28 C10 C 0 1 N N N N N N 20.570 48.007 62.069 3.795 -1.632 0.466 C28 WY8 10 WY8 C29 C11 C 0 1 N N R N N N 20.443 46.562 61.611 4.291 -0.176 0.377 C29 WY8 11 WY8 C3 C12 C 0 1 N N R N N N 19.349 48.186 63.011 2.286 -1.564 0.165 C3 WY8 12 WY8 C31 C13 C 0 1 Y N N N N N 22.945 46.058 61.376 5.485 -0.469 -1.822 C31 WY8 13 WY8 C33 C14 C 0 1 Y N N N N N 22.924 44.760 59.687 7.470 0.249 -1.336 C33 WY8 14 WY8 C34 C15 C 0 1 Y N N N N N 21.625 45.151 59.888 6.693 0.363 -0.179 C34 WY8 15 WY8 C36 C16 C 0 1 N N N N N N 20.834 43.973 58.207 8.490 1.227 0.976 C36 WY8 16 WY8 C38 C17 C 0 1 N N N N N N 23.211 43.861 58.610 8.825 0.661 -1.281 C38 WY8 17 WY8 C7 C18 C 0 1 N N N N N N 19.682 48.902 64.302 1.764 -2.830 -0.490 C7 WY8 18 WY8 C40 C19 C 0 1 N N S N N N 20.107 45.946 62.938 3.138 0.667 -0.204 C40 WY8 19 WY8 C11 C20 C 0 1 N N R N N N 22.120 46.186 66.623 -2.342 -1.189 -0.269 C11 WY8 20 WY8 C9 C21 C 0 1 N N R N N N 21.635 44.836 67.124 -2.154 -0.138 0.833 C9 WY8 21 WY8 F1 F1 F 0 1 N N N N N N 17.831 46.353 62.371 0.856 0.107 -0.823 F1 WY8 22 WY8 F25 F2 F 0 1 N N N N N N 23.529 46.701 68.488 -4.391 -2.283 -0.919 F25 WY8 23 WY8 N9 N1 N 0 1 Y N N N N N 24.757 44.453 65.948 -5.465 0.640 0.028 N9 WY8 24 WY8 N7 N2 N 0 1 Y N N N N N 25.233 43.652 63.904 -6.357 2.537 -0.582 N7 WY8 25 WY8 N3 N3 N 0 1 Y N N N N N 26.987 45.105 66.649 -7.534 -0.715 -0.305 N3 WY8 26 WY8 N1 N4 N 0 1 Y N N N N N 28.655 44.599 64.983 -9.367 0.484 -1.043 N1 WY8 27 WY8 N6 N5 N 0 1 N N N N N N 28.113 43.564 62.974 -9.293 2.806 -1.450 N6 WY8 28 WY8 N30 N6 N 0 1 Y N N N N N 21.642 45.984 60.976 5.448 -0.097 -0.511 N30 WY8 29 WY8 N32 N7 N 0 1 Y N N N N N 23.752 45.338 60.632 6.678 -0.267 -2.304 N32 WY8 30 WY8 N35 N8 N 0 1 N N N N N N 20.541 44.789 59.174 7.241 0.853 0.942 N35 WY8 31 WY8 N37 N9 N 0 1 N N N N N N 22.071 43.519 57.918 9.299 1.143 -0.110 N37 WY8 32 WY8 O11 O1 O 0 1 N N N N N N 20.968 44.152 64.889 -0.117 1.139 1.085 O11 WY8 33 WY8 O12 O2 O 0 1 N N N N N N 22.813 44.006 67.141 -3.446 0.339 1.225 O12 WY8 34 WY8 O27 O3 O 0 1 N N N N N N 22.189 49.117 65.865 -0.833 -4.653 0.456 O27 WY8 35 WY8 O39 O4 O 0 1 N N N N N N 24.305 43.420 58.271 9.544 0.581 -2.262 O39 WY8 36 WY8 O41 O5 O 0 1 N N N N N N 19.826 44.555 62.716 2.495 1.374 0.851 O41 WY8 37 WY8 O44 O6 O 0 1 N N N N N N 20.443 42.277 63.246 0.918 2.638 -0.663 O44 WY8 38 WY8 O5 O7 O 0 1 N N N N N N 19.957 48.033 65.415 0.341 -2.714 -0.652 O5 WY8 39 WY8 O7 O8 O 0 1 N N N N N N 21.328 47.208 67.254 -2.135 -2.507 0.228 O7 WY8 40 WY8 P42 P1 P 0 1 N N R N N N 19.971 43.518 63.868 1.088 2.144 0.722 P42 WY8 41 WY8 P6 P2 P 0 1 N N R N N N 20.982 48.520 66.487 -0.699 -3.177 0.487 P6 WY8 42 WY8 S26 S1 S 0 1 N N N N N N 20.151 49.844 67.855 0.024 -2.582 2.391 S26 WY8 43 WY8 S43 S2 S 0 1 N N N N N N 18.102 43.367 64.742 1.059 3.789 2.063 S43 WY8 44 WY8 H1 H1 H 0 1 N N N N N N 19.635 44.745 66.375 -1.070 0.878 -0.732 H1 WY8 45 WY8 H4 H2 H 0 1 N N N N N N 20.419 43.149 66.629 -1.888 1.960 0.412 H4 WY8 46 WY8 H3 H3 H 0 1 N N N N N N 24.592 44.587 68.035 -4.957 -1.073 1.134 H3 WY8 47 WY8 H8 H4 H 0 1 N N N N N N 23.261 43.628 64.631 -4.324 2.486 -0.001 H8 WY8 48 WY8 H5 H5 H 0 1 N N N N N N 18.568 46.620 64.294 2.490 -0.661 -1.793 H5 WY8 49 WY8 H2 H6 H 0 1 N N N N N N 29.003 45.434 66.823 -9.386 -1.552 -0.673 H2 WY8 50 WY8 H7 H7 H 0 1 N N N N N N 24.179 46.863 66.513 -3.881 -0.413 -1.594 H7 WY8 51 WY8 H6 H8 H 0 1 N N N N N N 21.514 48.168 62.611 4.299 -2.235 -0.284 H6 WY8 52 WY8 H9 H9 H 0 1 N N N N N N 20.515 48.698 61.215 3.966 -2.021 1.464 H9 WY8 53 WY8 H10 H10 H 0 1 N N N N N N 19.581 46.470 60.934 4.543 0.190 1.368 H10 WY8 54 WY8 H11 H11 H 0 1 N N N N N N 18.571 48.750 62.476 1.754 -1.341 1.086 H11 WY8 55 WY8 H12 H12 H 0 1 N N N N N N 23.278 46.648 62.217 4.652 -0.875 -2.376 H12 WY8 56 WY8 H13 H13 H 0 1 N N N N N N 20.021 43.630 57.584 8.893 1.617 1.899 H13 WY8 57 WY8 H14 H14 H 0 1 N N N N N N 20.570 49.528 64.128 2.225 -2.963 -1.470 H14 WY8 58 WY8 H15 H15 H 0 1 N N N N N N 18.828 49.542 64.569 1.980 -3.698 0.134 H15 WY8 59 WY8 H16 H16 H 0 1 N N N N N N 20.895 46.116 63.687 3.506 1.327 -0.972 H16 WY8 60 WY8 H17 H17 H 0 1 N N N N N N 22.100 46.244 65.525 -1.684 -0.989 -1.114 H17 WY8 61 WY8 H18 H18 H 0 1 N N N N N N 21.250 44.957 68.147 -1.661 -0.579 1.696 H18 WY8 62 WY8 HN61 H19 H 0 0 N N N N N N 29.110 43.596 62.899 -8.786 3.633 -1.459 HN61 WY8 63 WY8 HN62 H20 H 0 0 N N N N N N 27.806 42.613 62.941 -10.227 2.808 -1.714 HN62 WY8 64 WY8 H21 H21 H 0 1 N N N N N N 22.167 42.890 57.147 10.223 1.431 -0.046 H21 WY8 65 WY8 H22 H22 H 0 1 N N N N N N 20.958 50.860 67.773 1.208 -3.213 2.476 H22 WY8 66 WY8 H23 H23 H 0 1 N N N N N N 17.792 42.127 64.506 -0.153 4.331 1.851 H23 WY8 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WY8 N37 C36 SING N N 1 WY8 N37 C38 SING N N 2 WY8 C36 N35 DOUB N N 3 WY8 O39 C38 DOUB N N 4 WY8 C38 C33 SING N N 5 WY8 N35 C34 SING N N 6 WY8 C33 C34 DOUB Y N 7 WY8 C33 N32 SING Y N 8 WY8 C34 N30 SING Y N 9 WY8 N32 C31 DOUB Y N 10 WY8 N30 C31 SING Y N 11 WY8 N30 C29 SING N N 12 WY8 C29 C28 SING N N 13 WY8 C29 C40 SING N N 14 WY8 C28 C3 SING N N 15 WY8 F1 C1 SING N N 16 WY8 O41 C40 SING N N 17 WY8 O41 P42 SING N N 18 WY8 C40 C1 SING N N 19 WY8 N6 C6 SING N N 20 WY8 C3 C1 SING N N 21 WY8 C3 C7 SING N N 22 WY8 O44 P42 DOUB N N 23 WY8 P42 S43 SING N N 24 WY8 P42 O11 SING N N 25 WY8 N7 C5 SING Y N 26 WY8 N7 C8 DOUB Y N 27 WY8 C6 C5 DOUB Y N 28 WY8 C6 N1 SING Y N 29 WY8 C7 O5 SING N N 30 WY8 C5 C4 SING Y N 31 WY8 C8 N9 SING Y N 32 WY8 O11 C10 SING N N 33 WY8 N1 C2 DOUB Y N 34 WY8 O5 P6 SING N N 35 WY8 C4 N9 SING Y N 36 WY8 C4 N3 DOUB Y N 37 WY8 O27 P6 DOUB N N 38 WY8 N9 C13 SING N N 39 WY8 C2 N3 SING Y N 40 WY8 C10 C9 SING N N 41 WY8 P6 O7 SING N N 42 WY8 P6 S26 SING N N 43 WY8 C11 C9 SING N N 44 WY8 C11 C24 SING N N 45 WY8 C11 O7 SING N N 46 WY8 C9 O12 SING N N 47 WY8 C13 O12 SING N N 48 WY8 C13 C24 SING N N 49 WY8 C24 F25 SING N N 50 WY8 C10 H1 SING N N 51 WY8 C10 H4 SING N N 52 WY8 C13 H3 SING N N 53 WY8 C8 H8 SING N N 54 WY8 C1 H5 SING N N 55 WY8 C2 H2 SING N N 56 WY8 C24 H7 SING N N 57 WY8 C28 H6 SING N N 58 WY8 C28 H9 SING N N 59 WY8 C29 H10 SING N N 60 WY8 C3 H11 SING N N 61 WY8 C31 H12 SING N N 62 WY8 C36 H13 SING N N 63 WY8 C7 H14 SING N N 64 WY8 C7 H15 SING N N 65 WY8 C40 H16 SING N N 66 WY8 C11 H17 SING N N 67 WY8 C9 H18 SING N N 68 WY8 N6 HN61 SING N N 69 WY8 N6 HN62 SING N N 70 WY8 N37 H21 SING N N 71 WY8 S26 H22 SING N N 72 WY8 S43 H23 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WY8 InChI InChI 1.06 "InChI=1S/C21H23F2N9O8P2S2/c22-11-8-1-9(31-6-30-14-19(31)27-5-28-20(14)33)15(11)39-42(35,44)37-3-10-16(40-41(34,43)36-2-8)12(23)21(38-10)32-7-29-13-17(24)25-4-26-18(13)32/h4-12,15-16,21H,1-3H2,(H,34,43)(H,35,44)(H2,24,25,26)(H,27,28,33)/t8-,9-,10-,11-,12-,15+,16-,21-,41-,42-/m1/s1" WY8 InChIKey InChI 1.06 VEWJXUHPZNDXNI-YGFQTLPJSA-N WY8 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](S)(=O)O[C@@H]5[C@H](F)[C@@H](CO[P@](S)(=O)O[C@H]4[C@H]3F)C[C@H]5n6cnc7C(=O)NC=Nc67" WY8 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](F)[CH](CO[P](S)(=O)O[CH]4[CH]3F)C[CH]5n6cnc7C(=O)NC=Nc67" WY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O[C@H]5[C@@H](C[C@@H]([C@H]5F)CO[P@](=O)(O4)S)n6cnc7c6N=CNC7=O)S)F)N" WY8 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(CC(C5F)COP(=O)(O4)S)n6cnc7c6N=CNC7=O)S)F)N" # _pdbx_chem_comp_identifier.comp_id WY8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{S},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WY8 "Create component" 2023-05-23 PDBE WY8 "Initial release" 2023-12-20 RCSB #