data_WYK # _chem_comp.id WYK _chem_comp.name "(2S,4S)-4-hydroxy-L-arginine" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N4 O3" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms "(2S,4S)-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-23 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.200 _chem_comp.one_letter_code R _chem_comp.three_letter_code WYK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OM1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WYK N N1 N 0 1 N N N Y Y N 230.884 240.112 284.812 -2.245 1.558 0.933 N WYK 1 WYK CA C1 C 0 1 N N S Y N N 230.816 240.560 283.446 -2.261 0.508 -0.094 CA WYK 2 WYK C C2 C 0 1 N N N Y N Y 232.105 240.015 282.747 -3.518 -0.312 0.046 C WYK 3 WYK O O1 O 0 1 N N N Y N Y 233.185 240.045 283.340 -4.130 -0.307 1.088 O WYK 4 WYK CB C3 C 0 1 N N N N N N 230.527 242.023 283.223 -1.040 -0.396 0.082 CB WYK 5 WYK CG C4 C 0 1 N N S N N N 229.139 242.469 283.669 0.234 0.410 -0.184 CG WYK 6 WYK CD C5 C 0 1 N N N N N N 228.813 243.814 283.052 1.458 -0.459 0.112 CD WYK 7 WYK NE N2 N 0 1 N N N N N N 228.827 243.769 281.598 2.673 0.347 -0.026 NE WYK 8 WYK CZ C6 C 0 1 N N N N N N 227.688 243.436 280.758 3.905 -0.223 0.193 CZ WYK 9 WYK OH O2 O 0 1 N N N N N N 228.171 241.569 283.264 0.261 0.820 -1.552 OH WYK 10 WYK NH1 N3 N 0 1 N N N N N N 227.838 243.437 279.526 3.991 -1.481 0.524 NH1 WYK 11 WYK NH2 N4 N 0 1 N N N N N N 226.574 243.156 281.232 5.046 0.533 0.062 NH2 WYK 12 WYK OXT O3 O 0 1 N Y N Y N Y 231.965 239.541 281.513 -3.957 -1.050 -0.986 OXT WYK 13 WYK H H1 H 0 1 N N N Y Y N 230.079 240.434 285.310 -2.269 1.158 1.859 H WYK 14 WYK H2 H2 H 0 1 N Y N Y Y N 230.911 239.113 284.834 -1.445 2.162 0.820 H2 WYK 15 WYK HA H4 H 0 1 N N N Y N N 229.982 240.016 282.979 -2.235 0.966 -1.083 HA WYK 16 WYK HB2 H5 H 0 1 N N N N N N 231.272 242.609 283.781 -1.018 -0.784 1.100 HB2 WYK 17 WYK HB3 H6 H 0 1 N N N N N N 230.626 242.233 282.148 -1.098 -1.226 -0.623 HB3 WYK 18 WYK HG2 H7 H 0 1 N N N N N N 229.138 242.573 284.764 0.248 1.289 0.460 HG2 WYK 19 WYK HD2 H8 H 0 1 N N N N N N 229.558 244.549 283.391 1.392 -0.845 1.130 HD2 WYK 20 WYK HD3 H9 H 0 1 N N N N N N 227.812 244.124 283.387 1.492 -1.291 -0.591 HD3 WYK 21 WYK HE H10 H 0 1 N N N N N N 229.689 243.984 281.139 2.609 1.283 -0.273 HE WYK 22 WYK H11 H11 H 0 1 N N N N N N 228.354 240.716 283.639 0.250 0.088 -2.183 H11 WYK 23 WYK HH11 H12 H 0 0 N N N N N N 228.772 243.680 279.262 3.186 -2.014 0.616 HH11 WYK 24 WYK HH21 H14 H 0 0 N N N N N N 226.438 243.155 282.223 4.981 1.469 -0.184 HH21 WYK 25 WYK HH22 H15 H 0 0 N N N N N N 225.813 242.932 280.623 5.915 0.131 0.217 HH22 WYK 26 WYK HXT H16 H 0 1 N Y N Y N Y 232.808 239.245 281.189 -4.767 -1.559 -0.848 HXT WYK 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WYK NH1 CZ DOUB N N 1 WYK CZ NH2 SING N N 2 WYK CZ NE SING N N 3 WYK NE CD SING N N 4 WYK C O DOUB N N 5 WYK C CA SING N N 6 WYK CD CG SING N N 7 WYK CB CA SING N N 8 WYK CB CG SING N N 9 WYK OH CG SING N N 10 WYK CA N SING N N 11 WYK C OXT SING N N 12 WYK N H SING N N 13 WYK N H2 SING N N 14 WYK CA HA SING N N 15 WYK CB HB2 SING N N 16 WYK CB HB3 SING N N 17 WYK CG HG2 SING N N 18 WYK CD HD2 SING N N 19 WYK CD HD3 SING N N 20 WYK NE HE SING N N 21 WYK OH H11 SING N N 22 WYK NH1 HH11 SING N N 23 WYK NH2 HH21 SING N N 24 WYK NH2 HH22 SING N N 25 WYK OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WYK InChI InChI 1.06 "InChI=1S/C6H14N4O3/c7-4(5(12)13)1-3(11)2-10-6(8)9/h3-4,11H,1-2,7H2,(H,12,13)(H4,8,9,10)/t3-,4-/m0/s1" WYK InChIKey InChI 1.06 OPCBKDJCJYBGTQ-IMJSIDKUSA-N WYK SMILES_CANONICAL CACTVS 3.385 "N[C@@H](C[C@H](O)CNC(N)=N)C(O)=O" WYK SMILES CACTVS 3.385 "N[CH](C[CH](O)CNC(N)=N)C(O)=O" WYK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@H](C[C@@H](C(=O)O)N)O" WYK SMILES "OpenEye OEToolkits" 2.0.7 "C(C(CNC(=N)N)O)C(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id WYK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{S})-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id WYK _pdbx_chem_comp_synonyms.name "(2S,4S)-2-azanyl-5-carbamimidamido-4-oxidanyl-pentanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WYK "Create component" 2023-05-23 PDBE WYK "Modify parent residue" 2023-07-12 PDBE WYK "Modify one letter code" 2023-07-13 PDBE WYK "Initial release" 2023-08-09 RCSB WYK "Modify backbone" 2023-11-03 PDBE #