data_WYT # _chem_comp.id WYT _chem_comp.name "~{N}-[3-[5-chloranyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]oxyphenyl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H29 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-24 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.989 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P5J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WYT C1 C1 C 0 1 N N N N N N 50.115 24.895 8.380 -6.206 3.297 -3.611 C1 WYT 1 WYT C2 C2 C 0 1 N N N N N N 50.194 25.664 9.690 -5.957 3.651 -2.144 C2 WYT 2 WYT C3 C3 C 0 1 N N N N N N 50.016 27.179 9.595 -5.661 2.395 -1.367 C3 WYT 3 WYT C4 C4 C 0 1 Y N N N N N 48.616 28.981 10.540 -5.221 1.290 0.694 C4 WYT 4 WYT C5 C5 C 0 1 Y N N N N N 49.520 30.031 10.576 -4.585 0.200 0.117 C5 WYT 5 WYT C6 C6 C 0 1 Y N N N N N 49.045 31.255 10.944 -4.407 -0.963 0.850 C6 WYT 6 WYT O1 O1 O 0 1 N N N N N N 50.777 27.954 8.995 -5.650 1.321 -1.931 O1 WYT 7 WYT O2 O2 O 0 1 N N N N N N 49.879 32.344 11.111 -3.784 -2.032 0.288 O2 WYT 8 WYT O3 O3 O 0 1 N N N N N N 53.815 29.162 15.854 1.857 1.788 2.362 O3 WYT 9 WYT N1 N1 N 0 1 N N N N N N 48.934 27.649 10.231 -5.409 2.464 -0.044 N1 WYT 10 WYT C7 C7 C 0 1 Y N N N N N 47.716 31.510 11.155 -4.864 -1.034 2.159 C7 WYT 11 WYT C8 C8 C 0 1 Y N N N N N 46.824 30.461 11.066 -5.497 0.052 2.732 C8 WYT 12 WYT C9 C9 C 0 1 Y N N N N N 47.261 29.194 10.728 -5.677 1.213 2.005 C9 WYT 13 WYT C10 C10 C 0 1 Y N N N N N 50.409 32.513 12.346 -2.437 -1.980 0.144 C10 WYT 14 WYT N2 N2 N 0 1 Y N N N N N 50.847 31.476 13.037 -1.768 -0.877 0.457 N2 WYT 15 WYT C11 C11 C 0 1 Y N N N N N 51.380 31.724 14.239 -0.452 -0.822 0.317 C11 WYT 16 WYT N3 N3 N 0 1 Y N N N N N 51.462 32.936 14.803 0.242 -1.856 -0.136 N3 WYT 17 WYT C12 C12 C 0 1 Y N N N N N 50.986 33.959 14.096 -0.360 -2.987 -0.467 C12 WYT 18 WYT C13 C13 C 0 1 Y N N N N N 50.427 33.796 12.843 -1.733 -3.087 -0.330 C13 WYT 19 WYT CL1 CL1 CL 0 0 N N N N N N 49.813 35.151 11.913 -2.562 -4.555 -0.745 CL1 WYT 20 WYT N4 N4 N 0 1 N N N N N N 51.860 30.677 14.960 0.215 0.345 0.652 N4 WYT 21 WYT C14 C14 C 0 1 Y N N N N N 51.845 29.308 14.635 1.589 0.465 0.397 C14 WYT 22 WYT C15 C15 C 0 1 Y N N N N N 52.895 28.513 15.102 2.398 1.194 1.266 C15 WYT 23 WYT C16 C16 C 0 1 Y N N N N N 52.918 27.174 14.781 3.754 1.311 1.012 C16 WYT 24 WYT C17 C17 C 0 1 Y N N N N N 51.865 26.609 14.044 4.305 0.703 -0.108 C17 WYT 25 WYT C18 C18 C 0 1 Y N N N N N 50.843 27.435 13.567 3.497 -0.022 -0.973 C18 WYT 26 WYT C19 C19 C 0 1 Y N N N N N 50.832 28.771 13.866 2.144 -0.145 -0.718 C19 WYT 27 WYT N5 N5 N 0 1 N N N N N N 51.847 25.254 13.678 5.675 0.822 -0.366 N5 WYT 28 WYT C20 C20 C 0 1 N N N N N N 53.088 24.483 13.735 6.044 0.106 -1.595 C20 WYT 29 WYT C21 C21 C 0 1 N N N N N N 52.915 22.997 13.549 7.531 0.326 -1.884 C21 WYT 30 WYT N6 N6 N 0 1 N N N N N N 51.822 22.618 12.680 8.325 -0.149 -0.743 N6 WYT 31 WYT C22 C22 C 0 1 N N N N N N 50.555 23.163 13.140 7.956 0.567 0.487 C22 WYT 32 WYT C23 C23 C 0 1 N N N N N N 50.579 24.658 13.283 6.469 0.347 0.775 C23 WYT 33 WYT C24 C24 C 0 1 N N N N N N 51.740 21.145 12.553 9.763 -0.025 -1.013 C24 WYT 34 WYT C25 C25 C 0 1 N N N N N N 54.652 28.387 16.704 2.746 2.519 3.210 C25 WYT 35 WYT H1 H1 H 0 1 N N N N N N 50.257 23.822 8.575 -7.055 2.617 -3.682 H1 WYT 36 WYT H2 H2 H 0 1 N N N N N N 49.129 25.056 7.919 -6.420 4.206 -4.173 H2 WYT 37 WYT H3 H3 H 0 1 N N N N N N 50.901 25.251 7.698 -5.319 2.815 -4.024 H3 WYT 38 WYT H4 H4 H 0 1 N N N N N N 49.409 25.275 10.355 -5.108 4.331 -2.073 H4 WYT 39 WYT H5 H5 H 0 1 N N N N N N 51.181 25.469 10.134 -6.844 4.133 -1.731 H5 WYT 40 WYT H7 H6 H 0 1 N N N N N N 50.560 29.885 10.323 -4.231 0.258 -0.901 H7 WYT 41 WYT H6 H7 H 0 1 N N N N N N 48.268 26.963 10.523 -5.358 3.327 0.395 H6 WYT 42 WYT H8 H8 H 0 1 N N N N N N 47.374 32.508 11.386 -4.725 -1.940 2.730 H8 WYT 43 WYT H9 H9 H 0 1 N N N N N N 45.776 30.631 11.262 -5.852 -0.006 3.750 H9 WYT 44 WYT H10 H10 H 0 1 N N N N N N 46.557 28.383 10.612 -6.172 2.060 2.455 H10 WYT 45 WYT H11 H11 H 0 1 N N N N N N 51.039 34.952 14.517 0.214 -3.825 -0.836 H11 WYT 46 WYT H12 H12 H 0 1 N N N N N N 52.279 30.910 15.837 -0.268 1.078 1.063 H12 WYT 47 WYT H13 H13 H 0 1 N N N N N N 53.747 26.558 15.097 4.383 1.876 1.685 H13 WYT 48 WYT H14 H14 H 0 1 N N N N N N 50.056 27.016 12.958 3.927 -0.498 -1.842 H14 WYT 49 WYT H15 H15 H 0 1 N N N N N N 50.035 29.402 13.502 1.517 -0.710 -1.392 H15 WYT 50 WYT H16 H16 H 0 1 N N N N N N 53.553 24.654 14.717 5.852 -0.959 -1.467 H16 WYT 51 WYT H17 H17 H 0 1 N N N N N N 53.757 24.852 12.944 5.452 0.485 -2.428 H17 WYT 52 WYT H19 H18 H 0 1 N N N N N N 52.739 22.547 14.537 7.813 -0.227 -2.780 H19 WYT 53 WYT H18 H19 H 0 1 N N N N N N 53.846 22.595 13.123 7.718 1.389 -2.040 H18 WYT 54 WYT H20 H21 H 0 1 N N N N N N 49.773 22.892 12.416 8.548 0.188 1.320 H20 WYT 55 WYT H21 H22 H 0 1 N N N N N N 50.317 22.721 14.119 8.148 1.632 0.358 H21 WYT 56 WYT H23 H23 H 0 1 N N N N N N 50.295 25.091 12.313 6.187 0.900 1.671 H23 WYT 57 WYT H22 H24 H 0 1 N N N N N N 49.830 24.933 14.041 6.282 -0.716 0.931 H22 WYT 58 WYT H25 H25 H 0 1 N N N N N N 52.707 20.752 12.204 10.327 -0.446 -0.181 H25 WYT 59 WYT H26 H26 H 0 1 N N N N N N 51.497 20.706 13.532 10.009 -0.563 -1.928 H26 WYT 60 WYT H24 H27 H 0 1 N N N N N N 50.955 20.883 11.828 10.021 1.028 -1.131 H24 WYT 61 WYT H29 H28 H 0 1 N N N N N N 55.341 29.051 17.246 3.517 1.850 3.591 H29 WYT 62 WYT H27 H29 H 0 1 N N N N N N 54.031 27.836 17.426 3.212 3.323 2.640 H27 WYT 63 WYT H28 H30 H 0 1 N N N N N N 55.231 27.674 16.098 2.187 2.942 4.045 H28 WYT 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WYT C1 C2 SING N N 1 WYT O1 C3 DOUB N N 2 WYT C3 C2 SING N N 3 WYT C3 N1 SING N N 4 WYT N1 C4 SING N N 5 WYT C4 C5 DOUB Y N 6 WYT C4 C9 SING Y N 7 WYT C5 C6 SING Y N 8 WYT C9 C8 DOUB Y N 9 WYT C6 O2 SING N N 10 WYT C6 C7 DOUB Y N 11 WYT C8 C7 SING Y N 12 WYT O2 C10 SING N N 13 WYT CL1 C13 SING N N 14 WYT C10 C13 DOUB Y N 15 WYT C10 N2 SING Y N 16 WYT C24 N6 SING N N 17 WYT N6 C22 SING N N 18 WYT N6 C21 SING N N 19 WYT C13 C12 SING Y N 20 WYT N2 C11 DOUB Y N 21 WYT C22 C23 SING N N 22 WYT C23 N5 SING N N 23 WYT C21 C20 SING N N 24 WYT C18 C19 DOUB Y N 25 WYT C18 C17 SING Y N 26 WYT N5 C20 SING N N 27 WYT N5 C17 SING N N 28 WYT C19 C14 SING Y N 29 WYT C17 C16 DOUB Y N 30 WYT C12 N3 DOUB Y N 31 WYT C11 N3 SING Y N 32 WYT C11 N4 SING N N 33 WYT C14 N4 SING N N 34 WYT C14 C15 DOUB Y N 35 WYT C16 C15 SING Y N 36 WYT C15 O3 SING N N 37 WYT O3 C25 SING N N 38 WYT C1 H1 SING N N 39 WYT C1 H2 SING N N 40 WYT C1 H3 SING N N 41 WYT C2 H4 SING N N 42 WYT C2 H5 SING N N 43 WYT C5 H7 SING N N 44 WYT N1 H6 SING N N 45 WYT C7 H8 SING N N 46 WYT C8 H9 SING N N 47 WYT C9 H10 SING N N 48 WYT C12 H11 SING N N 49 WYT N4 H12 SING N N 50 WYT C16 H13 SING N N 51 WYT C18 H14 SING N N 52 WYT C19 H15 SING N N 53 WYT C20 H16 SING N N 54 WYT C20 H17 SING N N 55 WYT C21 H19 SING N N 56 WYT C21 H18 SING N N 57 WYT C22 H20 SING N N 58 WYT C22 H21 SING N N 59 WYT C23 H23 SING N N 60 WYT C23 H22 SING N N 61 WYT C24 H25 SING N N 62 WYT C24 H26 SING N N 63 WYT C24 H24 SING N N 64 WYT C25 H29 SING N N 65 WYT C25 H27 SING N N 66 WYT C25 H28 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WYT InChI InChI 1.06 "InChI=1S/C25H29ClN6O3/c1-4-23(33)28-17-6-5-7-19(14-17)35-24-20(26)16-27-25(30-24)29-21-9-8-18(15-22(21)34-3)32-12-10-31(2)11-13-32/h5-9,14-16H,4,10-13H2,1-3H3,(H,28,33)(H,27,29,30)" WYT InChIKey InChI 1.06 SDGJBAUIGHSMRI-UHFFFAOYSA-N WYT SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1cccc(Oc2nc(Nc3ccc(cc3OC)N4CCN(C)CC4)ncc2Cl)c1" WYT SMILES CACTVS 3.385 "CCC(=O)Nc1cccc(Oc2nc(Nc3ccc(cc3OC)N4CCN(C)CC4)ncc2Cl)c1" WYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cccc(c1)Oc2c(cnc(n2)Nc3ccc(cc3OC)N4CCN(CC4)C)Cl" WYT SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1cccc(c1)Oc2c(cnc(n2)Nc3ccc(cc3OC)N4CCN(CC4)C)Cl" # _pdbx_chem_comp_identifier.comp_id WYT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[5-chloranyl-2-[[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]amino]pyrimidin-4-yl]oxyphenyl]propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WYT "Create component" 2023-05-24 PDBE WYT "Initial release" 2024-06-05 RCSB #