data_WYX # _chem_comp.id WYX _chem_comp.name "5,11-dimethyl-2-[(1-piperidin-4-ylpyrazol-4-yl)amino]pyrimido[4,5-b][1,4]benzodiazepin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-24 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WYX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P5I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WYX C1 C1 C 0 1 N N N N N N 1.300 3.208 37.356 3.637 -1.205 -2.577 C1 WYX 1 WYX C2 C2 C 0 1 Y N N N N N 3.579 3.081 36.407 4.361 -1.196 -0.206 C2 WYX 2 WYX C3 C3 C 0 1 Y N N N N N 4.126 2.786 37.658 4.624 -2.537 0.040 C3 WYX 3 WYX C4 C4 C 0 1 Y N N N N N 5.499 2.821 37.881 5.513 -2.898 1.033 C4 WYX 4 WYX C5 C5 C 0 1 Y N N N N N 6.341 3.212 36.873 6.139 -1.926 1.796 C5 WYX 5 WYX C6 C6 C 0 1 Y N N N N N 5.828 3.480 35.619 5.895 -0.591 1.560 C6 WYX 6 WYX C8 C7 C 0 1 N N N N N N 3.992 3.829 33.999 4.786 1.215 0.272 C8 WYX 7 WYX C9 C8 C 0 1 Y N N N N N 2.227 2.080 33.902 2.400 1.112 -0.182 C9 WYX 8 WYX C10 C9 C 0 1 Y N N N N N 1.818 1.055 33.076 1.237 1.729 0.260 C10 WYX 9 WYX C11 C10 C 0 1 Y N N N N N 0.731 0.056 34.784 0.002 -0.048 -0.537 C11 WYX 10 WYX C14 C11 C 0 1 Y N N N N N -1.484 -2.264 36.755 -3.675 -0.442 -0.414 C14 WYX 11 WYX C15 C12 C 0 1 Y N N N N N -0.484 -0.525 37.645 -2.458 1.258 0.364 C15 WYX 12 WYX C17 C13 C 0 1 N N N N N N -2.410 -4.473 38.817 -6.360 -0.412 1.461 C17 WYX 13 WYX C18 C14 C 0 1 N N N N N N -3.613 -5.298 38.384 -7.883 -0.550 1.506 C18 WYX 14 WYX C20 C15 C 0 1 N N N N N N -4.200 -2.659 38.593 -6.502 -0.303 -1.028 C20 WYX 15 WYX N1 N1 N 0 1 N N N N N N 2.145 2.939 36.198 3.426 -0.842 -1.173 N1 WYX 16 WYX C7 C16 C 0 1 Y N N N N N 4.446 3.376 35.352 5.012 -0.210 0.545 C7 WYX 17 WYX O1 O1 O 0 1 N N N N N N 4.649 4.715 33.421 5.749 1.954 0.345 O1 WYX 18 WYX N2 N2 N 0 1 N N N N N N 2.958 3.193 33.376 3.624 1.765 -0.048 N2 WYX 19 WYX N3 N3 N 0 1 Y N N N N N 1.135 0.001 33.496 0.072 1.127 0.069 N3 WYX 20 WYX N4 N4 N 0 1 Y N N N N N 1.074 1.000 35.668 1.089 -0.678 -0.962 N4 WYX 21 WYX C12 C17 C 0 1 Y N N N N N 1.808 2.046 35.247 2.291 -0.141 -0.790 C12 WYX 22 WYX N5 N5 N 0 1 N N N N N N -0.025 -1.032 35.206 -1.238 -0.635 -0.732 N5 WYX 23 WYX C13 C18 C 0 1 Y N N N N N -0.622 -1.222 36.456 -2.404 0.018 -0.288 C13 WYX 24 WYX N6 N6 N 0 1 Y N N N N N -1.818 -2.149 38.051 -4.502 0.482 0.142 N6 WYX 25 WYX N7 N7 N 0 1 Y N N N N N -1.225 -1.063 38.610 -3.710 1.532 0.625 N7 WYX 26 WYX C16 C19 C 0 1 N N N N N N -2.729 -2.969 38.894 -5.962 0.396 0.222 C16 WYX 27 WYX N8 N8 N 0 1 N N N N N N -4.828 -5.043 39.171 -8.351 -1.226 0.288 N8 WYX 28 WYX C19 C20 C 0 1 N N N N N N -5.147 -3.613 39.315 -8.021 -0.445 -0.911 C19 WYX 29 WYX C21 C21 C 0 1 N N N N N N 2.601 3.617 32.014 3.626 3.210 -0.287 C21 WYX 30 WYX H1 H1 H 0 1 N N N N N N 1.778 3.969 37.991 3.193 -2.181 -2.771 H1 WYX 31 WYX H2 H2 H 0 1 N N N N N N 0.320 3.576 37.017 3.168 -0.459 -3.219 H2 WYX 32 WYX H3 H3 H 0 1 N N N N N N 1.164 2.282 37.934 4.706 -1.243 -2.786 H3 WYX 33 WYX H4 H4 H 0 1 N N N N N N 3.467 2.524 38.472 4.133 -3.300 -0.547 H4 WYX 34 WYX H5 H5 H 0 1 N N N N N N 5.899 2.541 38.844 5.720 -3.942 1.216 H5 WYX 35 WYX H6 H6 H 0 1 N N N N N N 7.400 3.310 37.058 6.822 -2.217 2.581 H6 WYX 36 WYX H7 H7 H 0 1 N N N N N N 6.499 3.775 34.826 6.387 0.162 2.159 H7 WYX 37 WYX H8 H8 H 0 1 N N N N N N 2.069 1.115 32.027 1.282 2.688 0.755 H8 WYX 38 WYX H10 H9 H 0 1 N N N N N N -1.825 -3.028 36.072 -3.975 -1.371 -0.876 H10 WYX 39 WYX H11 H10 H 0 1 N N N N N N 0.145 0.344 37.772 -1.610 1.878 0.614 H11 WYX 40 WYX H13 H11 H 0 1 N N N N N N -2.084 -4.817 39.810 -6.015 0.103 2.357 H13 WYX 41 WYX H14 H12 H 0 1 N N N N N N -1.597 -4.625 38.092 -5.905 -1.401 1.412 H14 WYX 42 WYX H15 H13 H 0 1 N N N N N N -3.829 -5.068 37.330 -8.169 -1.137 2.379 H15 WYX 43 WYX H16 H14 H 0 1 N N N N N N -3.355 -6.363 38.481 -8.336 0.439 1.569 H16 WYX 44 WYX H20 H15 H 0 1 N N N N N N -4.419 -1.630 38.915 -6.259 0.289 -1.910 H20 WYX 45 WYX H21 H16 H 0 1 N N N N N N -4.366 -2.747 37.509 -6.050 -1.291 -1.117 H21 WYX 46 WYX H9 H17 H 0 1 N N N N N N -0.157 -1.764 34.538 -1.303 -1.496 -1.175 H9 WYX 47 WYX H12 H18 H 0 1 N N N N N N -2.556 -2.669 39.938 -6.384 1.398 0.290 H12 WYX 48 WYX H17 H20 H 0 1 N N N N N N -5.598 -5.495 38.720 -7.975 -2.160 0.226 H17 WYX 49 WYX H19 H21 H 0 1 N N N N N N -5.126 -3.366 40.387 -8.474 0.544 -0.837 H19 WYX 50 WYX H18 H22 H 0 1 N N N N N N -6.161 -3.449 38.920 -8.408 -0.955 -1.794 H18 WYX 51 WYX H23 H23 H 0 1 N N N N N N 3.225 4.474 31.721 3.430 3.733 0.650 H23 WYX 52 WYX H24 H24 H 0 1 N N N N N N 2.770 2.785 31.315 4.598 3.513 -0.676 H24 WYX 53 WYX H22 H25 H 0 1 N N N N N N 1.541 3.909 31.987 2.851 3.460 -1.011 H22 WYX 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WYX C21 N2 SING N N 1 WYX C10 N3 DOUB Y N 2 WYX C10 C9 SING Y N 3 WYX N2 C9 SING N N 4 WYX N2 C8 SING N N 5 WYX O1 C8 DOUB N N 6 WYX N3 C11 SING Y N 7 WYX C9 C12 DOUB Y N 8 WYX C8 C7 SING N N 9 WYX C11 N5 SING N N 10 WYX C11 N4 DOUB Y N 11 WYX N5 C13 SING N N 12 WYX C12 N4 SING Y N 13 WYX C12 N1 SING N N 14 WYX C7 C6 DOUB Y N 15 WYX C7 C2 SING Y N 16 WYX C6 C5 SING Y N 17 WYX N1 C2 SING N N 18 WYX N1 C1 SING N N 19 WYX C2 C3 DOUB Y N 20 WYX C13 C14 DOUB Y N 21 WYX C13 C15 SING Y N 22 WYX C14 N6 SING Y N 23 WYX C5 C4 DOUB Y N 24 WYX C15 N7 DOUB Y N 25 WYX C3 C4 SING Y N 26 WYX N6 N7 SING Y N 27 WYX N6 C16 SING N N 28 WYX C18 C17 SING N N 29 WYX C18 N8 SING N N 30 WYX C20 C16 SING N N 31 WYX C20 C19 SING N N 32 WYX C17 C16 SING N N 33 WYX N8 C19 SING N N 34 WYX C1 H1 SING N N 35 WYX C1 H2 SING N N 36 WYX C1 H3 SING N N 37 WYX C3 H4 SING N N 38 WYX C4 H5 SING N N 39 WYX C5 H6 SING N N 40 WYX C6 H7 SING N N 41 WYX C10 H8 SING N N 42 WYX C14 H10 SING N N 43 WYX C15 H11 SING N N 44 WYX C17 H13 SING N N 45 WYX C17 H14 SING N N 46 WYX C18 H15 SING N N 47 WYX C18 H16 SING N N 48 WYX C20 H20 SING N N 49 WYX C20 H21 SING N N 50 WYX N5 H9 SING N N 51 WYX C16 H12 SING N N 52 WYX N8 H17 SING N N 53 WYX C19 H19 SING N N 54 WYX C19 H18 SING N N 55 WYX C21 H23 SING N N 56 WYX C21 H24 SING N N 57 WYX C21 H22 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WYX InChI InChI 1.06 "InChI=1S/C21H24N8O/c1-27-17-6-4-3-5-16(17)20(30)28(2)18-12-23-21(26-19(18)27)25-14-11-24-29(13-14)15-7-9-22-10-8-15/h3-6,11-13,15,22H,7-10H2,1-2H3,(H,23,25,26)" WYX InChIKey InChI 1.06 LKOFXMLMYKWELM-UHFFFAOYSA-N WYX SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)c2ccccc2N(C)c3nc(Nc4cnn(c4)C5CCNCC5)ncc13" WYX SMILES CACTVS 3.385 "CN1C(=O)c2ccccc2N(C)c3nc(Nc4cnn(c4)C5CCNCC5)ncc13" WYX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4cnn(c4)C5CCNCC5)C" WYX SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccccc2C(=O)N(c3c1nc(nc3)Nc4cnn(c4)C5CCNCC5)C" # _pdbx_chem_comp_identifier.comp_id WYX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5,11-dimethyl-2-[(1-piperidin-4-ylpyrazol-4-yl)amino]pyrimido[4,5-b][1,4]benzodiazepin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WYX "Create component" 2023-05-24 PDBE WYX "Initial release" 2024-06-05 RCSB #