data_WZ9 # _chem_comp.id WZ9 _chem_comp.name "7-azanyl-3-(phenylmethyl)-1~{H}-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H13 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-17 _chem_comp.pdbx_modified_date 2024-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.273 _chem_comp.one_letter_code ? _chem_comp.three_letter_code WZ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QVA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal WZ9 C13 C1 C 0 1 Y N N N N N -31.329 -4.515 3.127 2.224 0.063 -0.557 C13 WZ9 1 WZ9 C15 C2 C 0 1 Y N N N N N -33.109 -6.147 2.952 4.021 -0.439 0.944 C15 WZ9 2 WZ9 C17 C3 C 0 1 Y N N N N N -33.480 -3.904 2.085 3.357 1.834 0.589 C17 WZ9 3 WZ9 N01 N1 N 0 1 N N N N N N -26.924 -3.660 -1.824 -4.231 -0.359 1.285 N01 WZ9 4 WZ9 C02 C4 C 0 1 Y N N N N N -27.658 -4.522 -0.855 -3.231 0.299 0.560 C02 WZ9 5 WZ9 C03 C5 C 0 1 Y N N N N N -27.924 -5.860 -1.103 -3.379 1.637 0.226 C03 WZ9 6 WZ9 C04 C6 C 0 1 Y N N N N N -28.583 -6.620 -0.079 -2.391 2.289 -0.491 C04 WZ9 7 WZ9 C05 C7 C 0 1 Y N N N N N -29.027 -6.049 1.138 -1.250 1.614 -0.878 C05 WZ9 8 WZ9 C06 C8 C 0 1 Y N N N N N -28.774 -4.712 1.343 -1.091 0.274 -0.550 C06 WZ9 9 WZ9 C07 C9 C 0 1 Y N N N N N -28.104 -3.975 0.380 -2.081 -0.385 0.176 C07 WZ9 10 WZ9 N08 N2 N 0 1 N N N N N N -28.031 -2.622 0.909 -1.642 -1.697 0.358 N08 WZ9 11 WZ9 C09 C10 C 0 1 N N N N N N -28.624 -2.516 2.187 -0.437 -1.825 -0.228 C09 WZ9 12 WZ9 O10 O1 O 0 1 N N N N N N -28.713 -1.536 2.884 0.226 -2.845 -0.254 O10 WZ9 13 WZ9 N11 N3 N 0 1 N N N N N N -29.106 -3.805 2.454 -0.082 -0.655 -0.793 N11 WZ9 14 WZ9 C12 C11 C 0 1 N N N N N N -29.876 -4.214 3.616 1.162 -0.398 -1.522 C12 WZ9 15 WZ9 C14 C12 C 0 1 Y N N N N N -31.821 -5.789 3.339 3.047 -0.861 0.058 C14 WZ9 16 WZ9 C16 C13 C 0 1 Y N N N N N -33.944 -5.216 2.321 4.172 0.909 1.214 C16 WZ9 17 WZ9 C18 C14 C 0 1 Y N N N N N -32.172 -3.559 2.482 2.379 1.411 -0.291 C18 WZ9 18 WZ9 H1 H1 H 0 1 N N N N N N -33.467 -7.149 3.139 4.664 -1.161 1.425 H1 WZ9 19 WZ9 H2 H2 H 0 1 N N N N N N -34.118 -3.175 1.607 3.474 2.887 0.800 H2 WZ9 20 WZ9 H3 H3 H 0 1 N N N N N N -26.840 -2.736 -1.452 -4.124 -1.293 1.521 H3 WZ9 21 WZ9 H4 H4 H 0 1 N N N N N N -26.012 -4.039 -1.983 -5.031 0.120 1.551 H4 WZ9 22 WZ9 H5 H5 H 0 1 N N N N N N -27.643 -6.317 -2.040 -4.268 2.172 0.526 H5 WZ9 23 WZ9 H6 H6 H 0 1 N N N N N N -28.747 -7.675 -0.244 -2.512 3.331 -0.748 H6 WZ9 24 WZ9 H7 H7 H 0 1 N N N N N N -29.545 -6.641 1.878 -0.482 2.128 -1.438 H7 WZ9 25 WZ9 H8 H8 H 0 1 N N N N N N -27.610 -1.855 0.424 -2.123 -2.398 0.826 H8 WZ9 26 WZ9 H9 H9 H 0 1 N N N N N N -29.434 -5.117 4.062 0.991 0.376 -2.271 H9 WZ9 27 WZ9 H10 H10 H 0 1 N N N N N N -29.890 -3.406 4.362 1.491 -1.313 -2.014 H10 WZ9 28 WZ9 H11 H11 H 0 1 N N N N N N -31.191 -6.525 3.817 2.929 -1.914 -0.152 H11 WZ9 29 WZ9 H12 H12 H 0 1 N N N N N N -34.940 -5.501 2.016 4.936 1.239 1.902 H12 WZ9 30 WZ9 H13 H13 H 0 1 N N N N N N -31.803 -2.561 2.296 1.736 2.134 -0.772 H13 WZ9 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal WZ9 N01 C02 SING N N 1 WZ9 C03 C02 DOUB Y N 2 WZ9 C03 C04 SING Y N 3 WZ9 C02 C07 SING Y N 4 WZ9 C04 C05 DOUB Y N 5 WZ9 C07 N08 SING N N 6 WZ9 C07 C06 DOUB Y N 7 WZ9 N08 C09 SING N N 8 WZ9 C05 C06 SING Y N 9 WZ9 C06 N11 SING N N 10 WZ9 C17 C16 DOUB Y N 11 WZ9 C17 C18 SING Y N 12 WZ9 C09 N11 SING N N 13 WZ9 C09 O10 DOUB N N 14 WZ9 C16 C15 SING Y N 15 WZ9 N11 C12 SING N N 16 WZ9 C18 C13 DOUB Y N 17 WZ9 C15 C14 DOUB Y N 18 WZ9 C13 C14 SING Y N 19 WZ9 C13 C12 SING N N 20 WZ9 C15 H1 SING N N 21 WZ9 C17 H2 SING N N 22 WZ9 N01 H3 SING N N 23 WZ9 N01 H4 SING N N 24 WZ9 C03 H5 SING N N 25 WZ9 C04 H6 SING N N 26 WZ9 C05 H7 SING N N 27 WZ9 N08 H8 SING N N 28 WZ9 C12 H9 SING N N 29 WZ9 C12 H10 SING N N 30 WZ9 C14 H11 SING N N 31 WZ9 C16 H12 SING N N 32 WZ9 C18 H13 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor WZ9 InChI InChI 1.06 "InChI=1S/C14H13N3O/c15-11-7-4-8-12-13(11)16-14(18)17(12)9-10-5-2-1-3-6-10/h1-8H,9,15H2,(H,16,18)" WZ9 InChIKey InChI 1.06 RSMYBWVNPVYYCQ-UHFFFAOYSA-N WZ9 SMILES_CANONICAL CACTVS 3.385 "Nc1cccc2N(Cc3ccccc3)C(=O)Nc12" WZ9 SMILES CACTVS 3.385 "Nc1cccc2N(Cc3ccccc3)C(=O)Nc12" WZ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3cccc(c3NC2=O)N" WZ9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2c3cccc(c3NC2=O)N" # _pdbx_chem_comp_identifier.comp_id WZ9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-azanyl-3-(phenylmethyl)-1~{H}-benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site WZ9 "Create component" 2023-10-17 PDBE WZ9 "Initial release" 2024-03-27 RCSB #