data_X18 # _chem_comp.id X18 _chem_comp.name "N-[(1S)-1-(5-bromopyridin-2-yl)ethyl]-3-[(2R)-3,3-dimethylbutan-2-yl]-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 Br N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-30 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X18 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SZ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X18 C10 C1 C 0 1 Y N N N N N -5.818 13.995 44.973 5.821 -0.054 -0.270 C10 X18 1 X18 C13 C2 C 0 1 Y N N N N N -5.879 13.334 42.682 4.465 1.904 -0.230 C13 X18 2 X18 C15 C3 C 0 1 Y N N N N N -1.900 8.021 41.773 -2.578 0.507 0.403 C15 X18 3 X18 C20 C4 C 0 1 N N N N N N 0.005 6.442 38.783 -6.304 0.731 -1.418 C20 X18 4 X18 C21 C5 C 0 1 N N N N N N 1.001 6.704 37.642 -7.050 2.028 -1.738 C21 X18 5 X18 C22 C6 C 0 1 N N N N N N -1.188 7.372 38.595 -5.155 0.546 -2.411 C22 X18 6 X18 C24 C7 C 0 1 N N N N N N 0.250 4.953 41.970 -5.443 -1.649 0.417 C24 X18 7 X18 C28 C8 C 0 1 Y N N N N N -2.674 6.316 43.874 -1.920 -2.157 0.890 C28 X18 8 X18 C01 C9 C 0 1 Y N N N N N -3.377 7.523 43.647 -0.927 -1.203 0.853 C01 X18 9 X18 C02 C10 C 0 1 Y N N N N N -2.983 8.381 42.604 -1.248 0.136 0.609 C02 X18 10 X18 C03 C11 C 0 1 N N N N N N -3.737 9.706 42.302 -0.182 1.156 0.570 C03 X18 11 X18 C05 C12 C 0 1 N N S N N N -6.005 10.927 42.062 2.160 1.809 0.729 C05 X18 12 X18 C06 C13 C 0 1 N N N N N N -7.465 10.517 41.875 2.286 2.469 2.103 C06 X18 13 X18 C07 C14 C 0 1 Y N N N N N -5.931 12.023 43.121 3.468 1.154 0.365 C07 X18 14 X18 C09 C15 C 0 1 Y N N N N N -5.877 12.663 45.350 4.783 -0.738 0.337 C09 X18 15 X18 C12 C16 C 0 1 Y N N N N N -5.820 14.346 43.629 5.664 1.293 -0.561 C12 X18 16 X18 C16 C17 C 0 1 Y N N N N N -1.189 6.809 41.989 -3.572 -0.453 0.441 C16 X18 17 X18 C18 C18 C 0 1 N N R N N N 0.730 6.689 40.140 -5.744 0.802 0.004 C18 X18 18 X18 C19 C19 C 0 1 N N N N N N 1.085 8.156 40.297 -6.898 0.895 1.003 C19 X18 19 X18 C23 C20 C 0 1 N N N N N N -0.463 4.991 38.688 -7.268 -0.452 -1.528 C23 X18 20 X18 C27 C21 C 0 1 Y N N N N N -1.579 5.964 43.038 -3.244 -1.791 0.685 C27 X18 21 X18 N04 N1 N 0 1 N N N N N N -5.223 9.726 42.373 1.102 0.796 0.768 N04 X18 22 X18 N08 N2 N 0 1 Y N N N N N -5.934 11.721 44.417 3.654 -0.124 0.632 N08 X18 23 X18 N17 N3 N 0 1 N N N N N N -0.030 6.187 41.292 -4.955 -0.402 0.279 N17 X18 24 X18 N26 N4 N 0 1 N N N N N N -0.687 4.789 43.042 -4.434 -2.506 0.663 N26 X18 25 X18 O14 O1 O 0 1 N N N N N N -3.142 10.676 41.997 -0.461 2.320 0.357 O14 X18 26 X18 O25 O2 O 0 1 N N N N N N 1.110 4.191 41.690 -6.617 -1.955 0.334 O25 X18 27 X18 BR11 BR1 BR 0 0 N N N N N N -5.734 15.405 46.310 7.436 -0.943 -0.689 BR11 X18 28 X18 H1 H1 H 0 1 N N N N N N -5.884 13.564 41.627 4.306 2.950 -0.446 H1 X18 29 X18 H2 H2 H 0 1 N N N N N N -1.608 8.674 40.964 -2.830 1.541 0.220 H2 X18 30 X18 H3 H3 H 0 1 N N N N N N 1.873 6.043 37.756 -6.364 2.871 -1.660 H3 X18 31 X18 H4 H4 H 0 1 N N N N N N 0.513 6.504 36.677 -7.450 1.977 -2.751 H4 X18 32 X18 H5 H5 H 0 1 N N N N N N 1.330 7.753 37.676 -7.869 2.159 -1.031 H5 X18 33 X18 H6 H6 H 0 1 N N N N N N -1.916 7.203 39.402 -4.623 -0.377 -2.183 H6 X18 34 X18 H7 H7 H 0 1 N N N N N N -0.846 8.417 38.623 -5.554 0.496 -3.424 H7 X18 35 X18 H8 H8 H 0 1 N N N N N N -1.663 7.168 37.624 -4.468 1.389 -2.333 H8 X18 36 X18 H9 H9 H 0 1 N N N N N N -2.969 5.663 44.682 -1.668 -3.190 1.078 H9 X18 37 X18 H10 H10 H 0 1 N N N N N N -4.216 7.785 44.274 0.102 -1.490 1.011 H10 X18 38 X18 H11 H11 H 0 1 N N N N N N -5.645 11.347 41.111 1.913 2.565 -0.016 H11 X18 39 X18 H12 H12 H 0 1 N N N N N N -8.069 11.406 41.641 1.340 2.942 2.367 H12 X18 40 X18 H13 H13 H 0 1 N N N N N N -7.540 9.795 41.049 2.533 1.713 2.849 H13 X18 41 X18 H14 H14 H 0 1 N N N N N N -7.837 10.055 42.801 3.073 3.222 2.074 H14 X18 42 X18 H15 H15 H 0 1 N N N N N N -5.877 12.393 46.396 4.898 -1.786 0.571 H15 X18 43 X18 H16 H16 H 0 1 N N N N N N -5.777 15.382 43.328 6.458 1.852 -1.034 H16 X18 44 X18 H17 H17 H 0 1 N N N N N N 1.677 6.131 40.096 -5.108 1.682 0.100 H17 X18 45 X18 H18 H18 H 0 1 N N N N N N 1.595 8.309 41.259 -6.499 0.946 2.016 H18 X18 46 X18 H19 H19 H 0 1 N N N N N N 1.751 8.462 39.476 -7.485 1.791 0.798 H19 X18 47 X18 H20 H20 H 0 1 N N N N N N 0.166 8.760 40.269 -7.534 0.015 0.906 H20 X18 48 X18 H21 H21 H 0 1 N N N N N N -1.178 4.782 39.497 -7.963 -0.433 -0.689 H21 X18 49 X18 H22 H22 H 0 1 N N N N N N -0.951 4.826 37.716 -7.824 -0.383 -2.463 H22 X18 50 X18 H23 H23 H 0 1 N N N N N N 0.403 4.320 38.782 -6.702 -1.384 -1.510 H23 X18 51 X18 H24 H24 H 0 1 N N N N N N -5.705 8.892 42.642 1.325 -0.132 0.937 H24 X18 52 X18 H25 H25 H 0 1 N N N N N N -0.729 4.018 43.677 -4.524 -3.462 0.801 H25 X18 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X18 C21 C20 SING N N 1 X18 C22 C20 SING N N 2 X18 C23 C20 SING N N 3 X18 C20 C18 SING N N 4 X18 C18 C19 SING N N 5 X18 C18 N17 SING N N 6 X18 N17 C24 SING N N 7 X18 N17 C16 SING N N 8 X18 O25 C24 DOUB N N 9 X18 C15 C16 DOUB Y N 10 X18 C15 C02 SING Y N 11 X18 C06 C05 SING N N 12 X18 C24 N26 SING N N 13 X18 C16 C27 SING Y N 14 X18 O14 C03 DOUB N N 15 X18 C05 N04 SING N N 16 X18 C05 C07 SING N N 17 X18 C03 N04 SING N N 18 X18 C03 C02 SING N N 19 X18 C02 C01 DOUB Y N 20 X18 C13 C07 DOUB Y N 21 X18 C13 C12 SING Y N 22 X18 C27 N26 SING N N 23 X18 C27 C28 DOUB Y N 24 X18 C07 N08 SING Y N 25 X18 C12 C10 DOUB Y N 26 X18 C01 C28 SING Y N 27 X18 N08 C09 DOUB Y N 28 X18 C10 C09 SING Y N 29 X18 C10 BR11 SING N N 30 X18 C13 H1 SING N N 31 X18 C15 H2 SING N N 32 X18 C21 H3 SING N N 33 X18 C21 H4 SING N N 34 X18 C21 H5 SING N N 35 X18 C22 H6 SING N N 36 X18 C22 H7 SING N N 37 X18 C22 H8 SING N N 38 X18 C28 H9 SING N N 39 X18 C01 H10 SING N N 40 X18 C05 H11 SING N N 41 X18 C06 H12 SING N N 42 X18 C06 H13 SING N N 43 X18 C06 H14 SING N N 44 X18 C09 H15 SING N N 45 X18 C12 H16 SING N N 46 X18 C18 H17 SING N N 47 X18 C19 H18 SING N N 48 X18 C19 H19 SING N N 49 X18 C19 H20 SING N N 50 X18 C23 H21 SING N N 51 X18 C23 H22 SING N N 52 X18 C23 H23 SING N N 53 X18 N04 H24 SING N N 54 X18 N26 H25 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X18 SMILES ACDLabs 12.01 "Brc1ccc(nc1)C(C)NC(=O)c1ccc2NC(=O)N(c2c1)C(C)C(C)(C)C" X18 InChI InChI 1.06 "InChI=1S/C21H25BrN4O2/c1-12(16-9-7-15(22)11-23-16)24-19(27)14-6-8-17-18(10-14)26(20(28)25-17)13(2)21(3,4)5/h6-13H,1-5H3,(H,24,27)(H,25,28)/t12-,13+/m0/s1" X18 InChIKey InChI 1.06 DLMZWVVEARAWSJ-QWHCGFSZSA-N X18 SMILES_CANONICAL CACTVS 3.385 "C[C@H](NC(=O)c1ccc2NC(=O)N([C@H](C)C(C)(C)C)c2c1)c3ccc(Br)cn3" X18 SMILES CACTVS 3.385 "C[CH](NC(=O)c1ccc2NC(=O)N([CH](C)C(C)(C)C)c2c1)c3ccc(Br)cn3" X18 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cn1)Br)NC(=O)c2ccc3c(c2)N(C(=O)N3)[C@H](C)C(C)(C)C" X18 SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cn1)Br)NC(=O)c2ccc3c(c2)N(C(=O)N3)C(C)C(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X18 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1S)-1-(5-bromopyridin-2-yl)ethyl]-3-[(2R)-3,3-dimethylbutan-2-yl]-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxamide" X18 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-(5-bromanylpyridin-2-yl)ethyl]-3-[(2~{R})-3,3-dimethylbutan-2-yl]-2-oxidanylidene-1~{H}-benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X18 "Create component" 2023-05-30 RCSB X18 "Initial release" 2023-12-06 RCSB #