data_X1A
#
_chem_comp.id X1A
_chem_comp.name "N-(5-{[6-(5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,6-diazaspiro[3.4]octan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H22 N8 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-11-20
_chem_comp.pdbx_modified_date 2020-11-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 398.485
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code X1A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7KHV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X1A C2 C1 C 0 1 N N N 55.922 3.570 36.403 -7.461 1.449 -0.533 C2 X1A 1
X1A C3 C2 C 0 1 N N N 55.861 2.146 35.927 -8.632 2.373 -0.315 C3 X1A 2
X1A C5 C3 C 0 1 Y N N 54.751 5.602 36.916 -5.595 0.250 0.304 C5 X1A 3
X1A C7 C4 C 0 1 Y N N 53.998 7.660 37.213 -4.185 -1.035 -0.851 C7 X1A 4
X1A C8 C5 C 0 1 Y N N 55.253 7.889 37.619 -3.613 -1.211 0.341 C8 X1A 5
X1A N10 N1 N 0 1 N N N 55.519 9.405 39.586 -1.187 -1.242 0.485 N10 X1A 6
X1A C11 C6 C 0 1 N N N 56.255 8.925 40.785 -0.627 -1.355 -0.877 C11 X1A 7
X1A C12 C7 C 0 1 N N N 54.877 8.920 41.480 0.747 -1.445 -0.233 C12 X1A 8
X1A C16 C8 C 0 1 N N N 54.204 10.055 42.263 1.522 -0.138 -0.063 C16 X1A 9
X1A C17 C9 C 0 1 Y N N 51.621 10.171 42.574 3.999 0.413 -0.034 C17 X1A 10
X1A C18 C10 C 0 1 Y N N 51.526 11.561 42.460 3.757 1.768 0.088 C18 X1A 11
X1A C19 C11 C 0 1 Y N N 50.262 12.149 42.565 4.838 2.643 0.154 C19 X1A 12
X1A C24 C12 C 0 1 Y N N 48.791 8.016 43.117 7.177 -1.111 -0.205 C24 X1A 13
X1A C27 C13 C 0 1 N N N 54.330 8.725 40.106 -0.000 -1.967 0.983 C27 X1A 14
X1A O1 O1 O 0 1 N N N 57.019 4.045 36.662 -7.220 1.028 -1.644 O1 X1A 15
X1A N4 N2 N 0 1 N N N 54.763 4.274 36.524 -6.678 1.097 0.506 N4 X1A 16
X1A N6 N3 N 0 1 Y N N 53.751 6.416 36.837 -5.247 -0.251 -0.840 N6 X1A 17
X1A C9 C14 C 0 1 N N N 55.903 9.126 38.176 -2.400 -2.059 0.624 C9 X1A 18
X1A C13 C15 C 0 1 N N N 54.565 7.792 42.435 1.750 -2.409 -0.888 C13 X1A 19
X1A C14 C16 C 0 1 N N N 53.029 8.047 42.552 3.085 -1.946 -0.247 C14 X1A 20
X1A N15 N4 N 0 1 N N N 52.842 9.509 42.484 2.955 -0.482 -0.108 N15 X1A 21
X1A C20 C17 C 0 1 N N N 50.149 13.640 42.439 4.594 4.124 0.289 C20 X1A 22
X1A N21 N5 N 0 1 Y N N 49.155 11.458 42.754 6.071 2.186 0.100 N21 X1A 23
X1A C22 C18 C 0 1 Y N N 49.210 10.131 42.867 6.320 0.877 -0.018 C22 X1A 24
X1A N23 N6 N 0 1 Y N N 48.255 9.228 43.067 7.451 0.183 -0.093 N23 X1A 25
X1A N25 N7 N 0 1 Y N N 50.089 8.120 42.945 5.878 -1.287 -0.206 N25 X1A 26
X1A N26 N8 N 0 1 Y N N 50.428 9.479 42.783 5.292 -0.021 -0.087 N26 X1A 27
X1A S28 S1 S 0 1 Y N N 56.128 6.405 37.498 -4.523 -0.278 1.527 S28 X1A 28
X1A H3 H1 H 0 1 N N N 56.878 1.729 35.884 -8.309 3.406 -0.443 H3 X1A 29
X1A H2 H2 H 0 1 N N N 55.251 1.552 36.624 -9.414 2.144 -1.038 H2 X1A 30
X1A H1 H3 H 0 1 N N N 55.409 2.114 34.925 -9.019 2.236 0.695 H1 X1A 31
X1A H5 H4 H 0 1 N N N 53.244 8.433 37.194 -3.815 -1.503 -1.751 H5 X1A 32
X1A H8 H6 H 0 1 N N N 56.727 7.937 40.678 -0.924 -2.265 -1.397 H8 X1A 33
X1A H9 H7 H 0 1 N N N 56.984 9.636 41.200 -0.766 -0.458 -1.481 H9 X1A 34
X1A H14 H8 H 0 1 N N N 54.719 10.243 43.217 1.278 0.549 -0.874 H14 X1A 35
X1A H15 H9 H 0 1 N N N 54.172 10.983 41.674 1.279 0.318 0.897 H15 X1A 36
X1A H16 H10 H 0 1 N N N 52.406 12.165 42.295 2.745 2.142 0.132 H16 X1A 37
X1A H20 H11 H 0 1 N N N 48.249 7.095 43.273 7.911 -1.898 -0.283 H20 X1A 38
X1A H21 H12 H 0 1 N N N 53.383 9.251 39.913 0.382 -1.581 1.928 H21 X1A 39
X1A H22 H13 H 0 1 N N N 54.235 7.673 39.798 -0.122 -3.050 0.987 H22 X1A 40
X1A H4 H14 H 0 1 N N N 53.895 3.819 36.324 -6.871 1.434 1.395 H4 X1A 41
X1A H6 H15 H 0 1 N N N 56.995 8.999 38.130 -2.460 -2.451 1.640 H6 X1A 42
X1A H7 H16 H 0 1 N N N 55.607 9.986 37.556 -2.363 -2.888 -0.083 H7 X1A 43
X1A H10 H17 H 0 1 N N N 54.795 6.805 42.007 1.527 -3.443 -0.624 H10 X1A 44
X1A H11 H18 H 0 1 N N N 55.083 7.903 43.399 1.769 -2.279 -1.970 H11 X1A 45
X1A H13 H19 H 0 1 N N N 52.498 7.557 41.723 3.216 -2.408 0.732 H13 X1A 46
X1A H12 H20 H 0 1 N N N 52.651 7.659 43.510 3.923 -2.193 -0.897 H12 X1A 47
X1A H18 H21 H 0 1 N N N 49.094 13.937 42.530 4.547 4.390 1.345 H18 X1A 48
X1A H17 H22 H 0 1 N N N 50.735 14.121 43.236 5.408 4.671 -0.188 H17 X1A 49
X1A H19 H23 H 0 1 N N N 50.535 13.955 41.458 3.652 4.383 -0.194 H19 X1A 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X1A C3 C2 SING N N 1
X1A C2 N4 SING N N 2
X1A C2 O1 DOUB N N 3
X1A N4 C5 SING N N 4
X1A N6 C5 DOUB Y N 5
X1A N6 C7 SING Y N 6
X1A C5 S28 SING Y N 7
X1A C7 C8 DOUB Y N 8
X1A S28 C8 SING Y N 9
X1A C8 C9 SING N N 10
X1A C9 N10 SING N N 11
X1A N10 C27 SING N N 12
X1A N10 C11 SING N N 13
X1A C27 C12 SING N N 14
X1A C11 C12 SING N N 15
X1A C12 C16 SING N N 16
X1A C12 C13 SING N N 17
X1A C16 N15 SING N N 18
X1A C13 C14 SING N N 19
X1A C20 C19 SING N N 20
X1A C18 C19 SING Y N 21
X1A C18 C17 DOUB Y N 22
X1A N15 C14 SING N N 23
X1A N15 C17 SING N N 24
X1A C19 N21 DOUB Y N 25
X1A C17 N26 SING Y N 26
X1A N21 C22 SING Y N 27
X1A N26 C22 SING Y N 28
X1A N26 N25 SING Y N 29
X1A C22 N23 DOUB Y N 30
X1A N25 C24 DOUB Y N 31
X1A N23 C24 SING Y N 32
X1A C3 H3 SING N N 33
X1A C3 H2 SING N N 34
X1A C3 H1 SING N N 35
X1A C7 H5 SING N N 36
X1A C11 H8 SING N N 37
X1A C11 H9 SING N N 38
X1A C16 H14 SING N N 39
X1A C16 H15 SING N N 40
X1A C18 H16 SING N N 41
X1A C24 H20 SING N N 42
X1A C27 H21 SING N N 43
X1A C27 H22 SING N N 44
X1A N4 H4 SING N N 45
X1A C9 H6 SING N N 46
X1A C9 H7 SING N N 47
X1A C13 H10 SING N N 48
X1A C13 H11 SING N N 49
X1A C14 H13 SING N N 50
X1A C14 H12 SING N N 51
X1A C20 H18 SING N N 52
X1A C20 H17 SING N N 53
X1A C20 H19 SING N N 54
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X1A SMILES ACDLabs 12.01 "C(Nc1sc(cn1)CN2CC5(C2)CN(c3n4c(nc(c3)C)ncn4)CC5)(=O)C"
X1A InChI InChI 1.03 "InChI=1S/C18H22N8OS/c1-12-5-15(26-16(22-12)20-11-21-26)25-4-3-18(10-25)8-24(9-18)7-14-6-19-17(28-14)23-13(2)27/h5-6,11H,3-4,7-10H2,1-2H3,(H,19,23,27)"
X1A InChIKey InChI 1.03 DSEWUBFXIVTHKH-UHFFFAOYSA-N
X1A SMILES_CANONICAL CACTVS 3.385 "CC(=O)Nc1sc(CN2CC3(CCN(C3)c4cc(C)nc5ncnn45)C2)cn1"
X1A SMILES CACTVS 3.385 "CC(=O)Nc1sc(CN2CC3(CCN(C3)c4cc(C)nc5ncnn45)C2)cn1"
X1A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(n1)ncn2)N3CCC4(C3)CN(C4)Cc5cnc(s5)NC(=O)C"
X1A SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(n2c(n1)ncn2)N3CCC4(C3)CN(C4)Cc5cnc(s5)NC(=O)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X1A "SYSTEMATIC NAME" ACDLabs 12.01 "N-(5-{[6-(5-methyl[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,6-diazaspiro[3.4]octan-2-yl]methyl}-1,3-thiazol-2-yl)acetamide"
X1A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[5-[[7-(5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-7-yl)-2,7-diazaspiro[3.4]octan-2-yl]methyl]-1,3-thiazol-2-yl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X1A "Create component" 2020-11-20 RCSB
X1A "Initial release" 2020-12-02 RCSB
##